==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CELL ADHESION 30-MAY-07 2JQ8 . COMPND 2 MOLECULE: VITRONECTIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR H.GAARDSVOLL,D.HIRSCHBERG,S.NIELBO,A.MAYASUNDARI, . 47 1 4 4 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3920.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 19 40.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 10.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 12.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 8.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D 0 0 152 0, 0.0 2,-2.6 0, 0.0 3,-0.4 0.000 360.0 360.0 360.0 -42.8 -11.5 -8.7 -7.0 2 2 A Q + 0 0 162 1,-0.2 0, 0.0 2,-0.0 0, 0.0 -0.217 360.0 100.6 -77.5 52.0 -10.0 -5.8 -8.9 3 3 A E + 0 0 49 -2,-2.6 -1,-0.2 15,-0.1 29,-0.1 0.108 52.9 133.8-114.6 16.6 -9.0 -3.9 -5.8 4 4 A S - 0 0 35 -3,-0.4 2,-0.5 1,-0.1 15,-0.1 -0.089 63.8 -96.3 -63.7 164.5 -5.4 -5.1 -6.2 5 5 A a + 0 0 1 1,-0.1 33,-0.1 15,-0.1 -1,-0.1 -0.739 60.9 133.4 -92.0 128.3 -2.5 -2.7 -5.8 6 6 A K S S- 0 0 118 -2,-0.5 -1,-0.1 15,-0.1 3,-0.1 0.194 80.1 -11.4-129.9 -99.0 -1.0 -1.1 -8.9 7 7 A G S > S+ 0 0 47 1,-0.2 2,-1.3 2,-0.1 3,-0.8 0.374 101.5 103.1 -93.7 6.8 -0.2 2.6 -9.2 8 8 A R T 3 + 0 0 49 1,-0.3 13,-0.6 2,-0.1 6,-0.3 -0.214 62.5 78.7 -85.9 45.5 -2.1 3.6 -6.1 9 9 A b T 3 S+ 0 0 19 -2,-1.3 -1,-0.3 4,-0.1 4,-0.1 0.093 89.2 50.7-133.8 17.1 1.2 3.9 -4.2 10 10 A T S < S+ 0 0 127 -3,-0.8 -2,-0.1 2,-0.2 3,-0.1 0.645 101.6 53.9-124.7 -38.0 2.2 7.3 -5.5 11 11 A E S S- 0 0 134 -4,-0.5 2,-0.2 1,-0.3 -3,-0.1 0.761 116.0-101.6 -72.9 -26.6 -0.9 9.5 -5.0 12 12 A G - 0 0 22 9,-0.3 2,-0.4 2,-0.0 -1,-0.3 -0.630 56.8 -29.0 126.6 175.1 -1.0 8.6 -1.4 13 13 A F - 0 0 25 -2,-0.2 2,-1.2 -3,-0.1 9,-0.1 -0.463 48.8-147.7 -68.5 116.0 -2.9 6.4 1.0 14 14 A N > + 0 0 65 -2,-0.4 3,-0.7 -6,-0.3 -1,-0.1 -0.746 19.4 177.9 -79.5 97.8 -6.4 5.7 -0.1 15 15 A V T 3 S+ 0 0 89 -2,-1.2 -1,-0.2 1,-0.3 5,-0.1 0.511 76.5 61.0 -80.1 -2.9 -8.1 5.4 3.2 16 16 A D T 3 S+ 0 0 144 3,-0.1 2,-0.3 -3,-0.1 -1,-0.3 -0.323 87.5 88.7-119.8 46.8 -11.4 5.0 1.3 17 17 A K S < S- 0 0 93 -3,-0.7 3,-0.1 1,-0.1 -14,-0.0 -0.866 80.2-118.3-130.6 172.1 -10.6 1.8 -0.7 18 18 A K S S+ 0 0 139 -2,-0.3 2,-0.3 1,-0.3 -15,-0.1 0.705 106.1 22.0 -80.1 -21.8 -11.0 -1.9 -0.1 19 19 A c S S- 0 0 30 -15,-0.1 2,-0.3 -5,-0.0 -1,-0.3 -0.989 78.4-163.3-149.2 138.5 -7.3 -2.3 -0.4 20 20 A Q - 0 0 26 -2,-0.3 12,-1.3 10,-0.1 2,-0.3 -0.872 12.9-170.2-130.7 152.0 -4.6 0.3 0.1 21 21 A a + 0 0 2 -13,-0.6 2,-0.3 -2,-0.3 -9,-0.3 -0.937 31.7 117.8-142.5 120.1 -0.9 1.0 -0.7 22 22 A D S > S- 0 0 12 -2,-0.3 3,-1.3 -9,-0.1 4,-0.2 -0.946 75.2 -94.6-154.3-179.5 1.2 3.8 0.7 23 23 A E T > S+ 0 0 155 -2,-0.3 3,-0.7 1,-0.3 4,-0.2 0.734 127.9 62.1 -67.6 -22.5 4.3 4.5 2.8 24 24 A L T 3> S+ 0 0 71 1,-0.2 4,-2.2 2,-0.2 5,-0.3 0.207 71.3 105.0 -85.5 14.2 1.6 4.8 5.4 25 25 A d H <>>S+ 0 0 10 -3,-1.3 5,-1.6 1,-0.2 4,-1.3 0.896 84.3 43.7 -61.2 -39.3 0.7 1.2 4.8 26 26 A S H <45S+ 0 0 87 -3,-0.7 -1,-0.2 3,-0.2 -2,-0.2 0.755 108.4 61.4 -74.3 -26.0 2.4 0.3 8.1 27 27 A Y H 45S+ 0 0 167 -4,-0.2 -2,-0.2 1,-0.2 -1,-0.2 0.926 119.9 23.1 -67.5 -47.8 0.7 3.3 9.7 28 28 A Y H <5S- 0 0 95 -4,-2.2 -2,-0.2 2,-0.1 -1,-0.2 0.630 101.6-131.3 -90.0 -16.1 -2.8 2.0 9.1 29 29 A Q T <5S+ 0 0 172 -4,-1.3 -3,-0.2 -5,-0.3 2,-0.2 0.943 71.2 119.5 58.9 50.5 -1.6 -1.6 8.9 30 30 A S < + 0 0 44 -5,-1.6 2,-0.4 -6,-0.2 -10,-0.1 -0.651 27.6 134.0-147.9 78.2 -3.7 -1.9 5.7 31 31 A d - 0 0 53 -2,-0.2 -10,-0.2 -10,-0.1 2,-0.0 -0.977 48.8-116.7-127.7 147.4 -1.6 -2.8 2.6 32 32 A c > - 0 0 14 -12,-1.3 3,-1.2 -2,-0.4 4,-0.3 -0.218 28.6-109.7 -73.8 169.4 -2.2 -5.4 -0.1 33 33 A T T > S+ 0 0 139 1,-0.3 3,-0.5 2,-0.1 4,-0.4 0.794 119.1 56.2 -70.6 -28.3 0.0 -8.4 -0.8 34 34 A D T 3> S+ 0 0 48 1,-0.2 4,-2.8 2,-0.2 5,-0.5 0.221 80.0 97.8 -89.6 17.1 1.1 -6.8 -4.1 35 35 A Y H <>>S+ 0 0 20 -3,-1.2 4,-2.1 2,-0.2 5,-1.2 0.945 88.0 39.9 -67.1 -48.0 2.3 -3.7 -2.2 36 36 A T H <45S+ 0 0 82 -3,-0.5 -1,-0.2 -4,-0.3 -2,-0.2 0.800 118.3 50.9 -72.2 -29.7 5.9 -4.9 -2.1 37 37 A A H 45S+ 0 0 54 -4,-0.4 -2,-0.2 2,-0.1 -1,-0.2 0.975 122.8 25.3 -70.0 -57.8 5.6 -6.2 -5.6 38 38 A E H <5S+ 0 0 106 -4,-2.8 -3,-0.2 -33,-0.1 -2,-0.2 0.897 135.0 30.3 -79.0 -42.6 4.2 -3.1 -7.3 39 39 A b T <5S- 0 0 42 -4,-2.1 -3,-0.2 -5,-0.5 -2,-0.1 0.960 75.9-164.3 -84.1 -55.4 5.4 -0.3 -5.0 40 40 A K < - 0 0 141 -5,-1.2 -4,-0.1 1,-0.1 -3,-0.1 0.998 3.2-170.3 61.5 76.2 8.7 -1.7 -3.6 41 41 A P - 0 0 47 0, 0.0 3,-0.2 0, 0.0 -1,-0.1 0.605 32.8-124.7 -75.0 -12.0 9.1 0.8 -0.6 42 42 A Q - 0 0 169 1,-0.2 2,-1.7 -6,-0.1 4,-0.1 1.000 21.1-153.3 64.5 71.2 12.6 -0.4 0.1 43 43 A V + 0 0 96 1,-0.2 -1,-0.2 2,-0.1 4,-0.1 -0.571 22.0 173.8 -79.1 86.3 12.3 -1.5 3.7 44 44 A T S S+ 0 0 145 -2,-1.7 -1,-0.2 -3,-0.2 3,-0.1 0.987 75.1 14.3 -56.7 -77.2 16.0 -0.9 4.7 45 45 A R S S- 0 0 199 1,-0.2 2,-1.6 0, 0.0 -1,-0.2 0.623 88.4-152.0 -80.2 -12.3 16.1 -1.5 8.5 46 46 A G 0 0 53 -4,-0.1 -1,-0.2 1,-0.1 -2,-0.1 -0.621 360.0 360.0 76.9 -90.1 12.7 -3.1 8.6 47 47 A D 0 0 171 -2,-1.6 -1,-0.1 -3,-0.1 -4,-0.0 -0.881 360.0 360.0-139.5 360.0 11.7 -2.1 12.1