==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 01-JUN-07 2JQH . COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATING PROTEIN 4B; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.D.STUCHELL-BRERETON,J.J.SKALICKY,C.KIEFFER,S.GHAFFARIAN, . 72 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5454.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 83.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 58 80.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 10 A N > 0 0 120 0, 0.0 4,-1.2 0, 0.0 37,-0.1 0.000 360.0 360.0 360.0 -34.3 -2.6 11.6 2.9 2 11 A L H > + 0 0 60 2,-0.2 4,-1.9 1,-0.2 3,-0.5 0.933 360.0 50.0 -66.5 -47.5 -4.1 9.1 5.5 3 12 A Q H > S+ 0 0 160 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.838 108.4 54.7 -60.3 -33.5 -7.5 9.0 3.8 4 13 A K H > S+ 0 0 107 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.822 106.2 51.8 -69.8 -31.7 -5.8 8.3 0.5 5 14 A A H X S+ 0 0 0 -4,-1.2 4,-1.5 -3,-0.5 -2,-0.2 0.885 114.3 41.5 -71.9 -40.2 -3.9 5.4 2.0 6 15 A I H X S+ 0 0 87 -4,-1.9 4,-2.4 2,-0.2 -2,-0.2 0.894 114.0 52.0 -74.2 -41.8 -7.1 3.8 3.3 7 16 A D H X S+ 0 0 94 -4,-2.5 4,-1.7 1,-0.2 -2,-0.2 0.925 115.6 40.6 -60.5 -46.7 -9.2 4.5 0.2 8 17 A L H X S+ 0 0 15 -4,-1.8 4,-2.2 1,-0.2 -1,-0.2 0.836 113.4 55.4 -71.1 -33.5 -6.6 3.0 -2.1 9 18 A A H X S+ 0 0 2 -4,-1.5 4,-2.2 2,-0.2 -2,-0.2 0.884 107.4 49.1 -66.5 -39.7 -6.0 0.1 0.4 10 19 A S H X S+ 0 0 74 -4,-2.4 4,-1.5 2,-0.2 -2,-0.2 0.925 113.6 45.2 -66.0 -45.8 -9.7 -0.8 0.4 11 20 A K H X S+ 0 0 107 -4,-1.7 4,-2.3 1,-0.2 -2,-0.2 0.873 112.7 52.3 -65.8 -38.0 -9.9 -0.8 -3.4 12 21 A A H X S+ 0 0 0 -4,-2.2 4,-2.3 2,-0.2 5,-0.3 0.925 108.4 49.1 -64.3 -46.1 -6.7 -2.8 -3.7 13 22 A A H X S+ 0 0 31 -4,-2.2 4,-1.4 1,-0.2 -1,-0.2 0.820 115.2 45.8 -63.3 -31.2 -7.9 -5.5 -1.3 14 23 A Q H X S+ 0 0 139 -4,-1.5 4,-2.2 2,-0.2 -1,-0.2 0.829 109.6 54.2 -80.3 -34.7 -11.2 -5.7 -3.2 15 24 A E H X>S+ 0 0 51 -4,-2.3 4,-2.8 2,-0.2 5,-1.0 0.935 113.0 41.5 -64.9 -47.7 -9.4 -5.8 -6.6 16 25 A D H <5S+ 0 0 6 -4,-2.3 -2,-0.2 2,-0.2 -1,-0.2 0.912 118.4 46.0 -66.5 -43.7 -7.2 -8.7 -5.7 17 26 A K H <5S+ 0 0 172 -4,-1.4 -1,-0.2 -5,-0.3 -2,-0.2 0.825 115.6 48.0 -68.5 -32.1 -10.0 -10.6 -4.0 18 27 A A H <5S- 0 0 84 -4,-2.2 -2,-0.2 2,-0.2 -1,-0.2 0.909 128.4 -91.0 -75.2 -44.7 -12.3 -9.8 -6.9 19 28 A G T <5S+ 0 0 45 -4,-2.8 2,-0.5 1,-0.4 -3,-0.2 0.058 91.2 110.6 158.3 -33.2 -9.9 -10.9 -9.6 20 29 A N < + 0 0 88 -5,-1.0 -1,-0.4 -6,-0.2 -2,-0.2 -0.583 26.8 160.8 -74.1 118.7 -7.9 -7.8 -10.7 21 30 A Y > + 0 0 89 -2,-0.5 4,-2.7 3,-0.1 -1,-0.2 0.739 69.0 57.7-105.7 -36.5 -4.3 -8.2 -9.6 22 31 A E H > S+ 0 0 154 2,-0.2 4,-1.7 1,-0.2 5,-0.2 0.960 114.0 38.0 -60.2 -53.7 -2.6 -5.7 -11.8 23 32 A E H > S+ 0 0 127 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.841 117.5 52.6 -67.3 -33.7 -4.7 -2.7 -10.7 24 33 A A H > S+ 0 0 0 2,-0.2 4,-2.5 1,-0.2 -2,-0.2 0.864 104.9 55.6 -70.0 -37.1 -4.6 -4.1 -7.1 25 34 A L H X S+ 0 0 10 -4,-2.7 4,-1.8 2,-0.2 -2,-0.2 0.953 109.0 45.1 -60.4 -52.4 -0.8 -4.3 -7.1 26 35 A Q H X S+ 0 0 114 -4,-1.7 4,-1.4 1,-0.2 -1,-0.2 0.824 114.7 50.8 -61.6 -31.7 -0.3 -0.7 -8.0 27 36 A L H X S+ 0 0 21 -4,-1.3 4,-2.2 2,-0.2 -1,-0.2 0.866 104.5 56.4 -74.0 -37.7 -2.9 0.2 -5.4 28 37 A Y H X S+ 0 0 0 -4,-2.5 4,-1.5 1,-0.2 -2,-0.2 0.907 108.8 46.6 -60.4 -43.5 -1.3 -1.8 -2.7 29 38 A Q H X S+ 0 0 61 -4,-1.8 4,-2.0 1,-0.2 -1,-0.2 0.877 109.5 54.9 -66.8 -38.5 2.0 0.1 -3.1 30 39 A H H X S+ 0 0 67 -4,-1.4 4,-2.2 1,-0.2 5,-0.3 0.917 105.5 51.9 -61.2 -45.1 0.2 3.4 -3.2 31 40 A A H X S+ 0 0 0 -4,-2.2 4,-2.2 1,-0.2 -1,-0.2 0.884 111.9 46.5 -59.4 -40.2 -1.5 2.7 0.2 32 41 A V H X S+ 0 0 7 -4,-1.5 4,-2.4 2,-0.2 5,-0.2 0.822 108.7 56.3 -71.9 -32.1 1.9 1.9 1.7 33 42 A Q H X S+ 0 0 130 -4,-2.0 4,-1.2 2,-0.2 -2,-0.2 0.910 114.0 38.2 -66.1 -43.3 3.5 5.0 0.2 34 43 A Y H X S+ 0 0 61 -4,-2.2 4,-1.5 2,-0.2 -2,-0.2 0.871 115.1 54.4 -75.3 -38.6 0.9 7.3 1.8 35 44 A F H X S+ 0 0 4 -4,-2.2 4,-1.9 -5,-0.3 3,-0.5 0.948 112.1 42.5 -60.3 -51.3 0.8 5.3 5.1 36 45 A L H X S+ 0 0 87 -4,-2.4 4,-2.6 1,-0.2 5,-0.3 0.823 107.2 63.5 -65.3 -31.6 4.6 5.5 5.6 37 46 A H H X S+ 0 0 62 -4,-1.2 4,-2.1 -5,-0.2 5,-0.3 0.866 107.1 42.9 -60.8 -37.3 4.5 9.1 4.5 38 47 A V H X S+ 0 0 15 -4,-1.5 4,-1.4 -3,-0.5 -2,-0.2 0.934 114.3 48.1 -74.5 -48.8 2.4 9.9 7.6 39 48 A V H X S+ 0 0 37 -4,-1.9 4,-0.5 1,-0.2 -2,-0.2 0.864 117.4 44.1 -60.0 -37.3 4.3 7.8 10.1 40 49 A K H < S+ 0 0 162 -4,-2.6 -1,-0.2 -5,-0.2 -2,-0.2 0.924 124.2 33.6 -73.9 -46.6 7.6 9.3 8.8 41 50 A Y H < S- 0 0 143 -4,-2.1 2,-0.2 -5,-0.3 -3,-0.2 0.993 139.3 -34.6 -71.7 -73.5 6.3 12.9 8.7 42 51 A E H < - 0 0 162 -4,-1.4 -3,-0.2 -5,-0.3 -2,-0.2 -0.669 63.0-163.7-159.2 96.7 3.9 13.1 11.6 43 52 A A < - 0 0 22 -4,-0.5 3,-0.1 -2,-0.2 -4,-0.1 0.018 32.9-107.9 -69.8-177.1 1.7 10.2 12.6 44 53 A Q S S- 0 0 146 1,-0.3 2,-0.3 2,-0.1 -1,-0.1 0.895 80.9 -44.4 -81.8 -44.3 -1.4 10.4 14.9 45 54 A G > - 0 0 28 1,-0.1 4,-2.2 0, 0.0 -1,-0.3 -0.963 62.5 -76.0-170.0-176.5 0.1 8.8 17.9 46 55 A D H > S+ 0 0 128 -2,-0.3 4,-1.6 2,-0.2 3,-0.3 0.980 128.8 39.0 -60.4 -60.2 2.2 6.0 19.4 47 56 A K H > S+ 0 0 167 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.822 113.1 59.9 -60.3 -31.6 -0.5 3.3 19.1 48 57 A A H > S+ 0 0 25 1,-0.2 4,-1.6 2,-0.2 3,-0.3 0.915 102.2 50.9 -63.4 -44.6 -1.5 4.7 15.8 49 58 A K H X S+ 0 0 76 -4,-2.2 4,-2.2 -3,-0.3 -1,-0.2 0.903 106.4 54.8 -60.2 -43.0 2.0 4.2 14.3 50 59 A Q H X S+ 0 0 117 -4,-1.6 4,-1.5 1,-0.2 -1,-0.2 0.833 105.3 54.6 -60.2 -33.0 1.9 0.5 15.4 51 60 A S H X S+ 0 0 64 -4,-1.3 4,-1.4 -3,-0.3 -1,-0.2 0.885 109.8 45.2 -68.4 -39.7 -1.3 0.1 13.6 52 61 A I H X S+ 0 0 10 -4,-1.6 4,-3.6 2,-0.2 5,-0.2 0.838 107.0 59.9 -72.5 -34.0 0.1 1.4 10.3 53 62 A R H X S+ 0 0 127 -4,-2.2 4,-1.3 1,-0.2 -2,-0.2 0.912 108.0 44.2 -60.3 -44.3 3.3 -0.7 10.7 54 63 A A H X S+ 0 0 60 -4,-1.5 4,-1.4 2,-0.2 -1,-0.2 0.852 117.8 45.3 -69.4 -35.5 1.2 -3.9 10.7 55 64 A K H X S+ 0 0 75 -4,-1.4 4,-2.4 2,-0.2 5,-0.3 0.899 108.8 54.8 -74.6 -42.8 -0.9 -2.7 7.8 56 65 A C H X S+ 0 0 5 -4,-3.6 4,-1.2 1,-0.2 -1,-0.2 0.821 113.2 44.1 -60.2 -31.5 2.1 -1.5 5.8 57 66 A T H X S+ 0 0 81 -4,-1.3 4,-2.0 -5,-0.2 -1,-0.2 0.800 109.5 56.4 -82.8 -31.6 3.6 -4.9 6.1 58 67 A E H X S+ 0 0 138 -4,-1.4 4,-1.5 2,-0.2 -2,-0.2 0.949 114.4 36.9 -64.9 -50.7 0.4 -6.7 5.3 59 68 A Y H X S+ 0 0 45 -4,-2.4 4,-3.2 1,-0.2 5,-0.3 0.879 114.9 56.2 -69.6 -38.9 -0.2 -5.0 2.0 60 69 A L H X S+ 0 0 66 -4,-1.2 4,-2.3 -5,-0.3 -1,-0.2 0.884 106.6 50.4 -60.4 -40.0 3.6 -5.1 1.2 61 70 A D H X S+ 0 0 111 -4,-2.0 4,-1.6 2,-0.2 -1,-0.2 0.895 114.5 43.7 -65.7 -40.9 3.7 -8.8 1.7 62 71 A R H X S+ 0 0 90 -4,-1.5 4,-2.3 2,-0.2 -2,-0.2 0.951 118.3 42.2 -69.5 -51.1 0.7 -9.3 -0.7 63 72 A A H X S+ 0 0 2 -4,-3.2 4,-2.7 1,-0.2 5,-0.3 0.843 110.4 59.6 -64.6 -34.1 1.9 -6.9 -3.3 64 73 A E H X S+ 0 0 95 -4,-2.3 4,-1.1 -5,-0.3 -1,-0.2 0.924 111.2 38.9 -60.4 -46.5 5.4 -8.2 -3.0 65 74 A K H X S+ 0 0 139 -4,-1.6 4,-1.7 2,-0.2 5,-0.3 0.867 113.6 56.5 -72.2 -37.7 4.3 -11.7 -4.0 66 75 A L H X S+ 0 0 11 -4,-2.3 4,-2.2 1,-0.2 -2,-0.2 0.950 110.5 42.5 -58.7 -52.0 1.9 -10.4 -6.6 67 76 A K H X S+ 0 0 64 -4,-2.7 4,-2.7 1,-0.2 5,-0.3 0.790 105.6 68.4 -65.7 -27.9 4.6 -8.5 -8.5 68 77 A E H X S+ 0 0 112 -4,-1.1 4,-1.4 -5,-0.3 -1,-0.2 0.956 111.4 28.8 -56.0 -55.6 6.9 -11.4 -8.0 69 78 A Y H < S+ 0 0 115 -4,-1.7 -1,-0.2 2,-0.2 -2,-0.2 0.859 118.0 59.0 -74.8 -36.9 4.9 -13.7 -10.4 70 79 A L H < S+ 0 0 54 -4,-2.2 -2,-0.2 -5,-0.3 -1,-0.2 0.867 111.6 41.3 -60.1 -36.6 3.6 -10.8 -12.4 71 80 A K H < 0 0 157 -4,-2.7 -1,-0.2 -5,-0.2 -2,-0.2 0.821 360.0 360.0 -80.1 -32.7 7.2 -9.8 -13.2 72 81 A N < 0 0 169 -4,-1.4 -2,-0.2 -5,-0.3 -3,-0.2 0.924 360.0 360.0 -68.5 360.0 8.4 -13.4 -13.8