==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-JAN-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 20-JUN-07 2JR5 . COMPND 2 MOLECULE: UPF0350 PROTEIN VC_2471; . SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; . AUTHOR Y.WU,D.PARISH,K.K.SINGARAPU,D.SUKUMARAN,A.ELETSKI,R.SHASTRY, . 94 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7135.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 73.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 12.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 52 55.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 2 0 0 1 0 0 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 205 0, 0.0 36,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 113.2 0.1 19.2 4.8 2 2 A Y - 0 0 45 1,-0.1 2,-0.3 2,-0.0 3,-0.0 0.354 360.0-124.6 69.8 159.8 2.2 16.2 6.0 3 3 A T > - 0 0 72 1,-0.1 4,-1.7 0, 0.0 3,-0.2 -0.960 18.6-123.5-136.9 155.3 5.7 16.1 7.2 4 4 A A H > S+ 0 0 83 -2,-0.3 4,-1.4 1,-0.2 5,-0.1 0.778 115.8 63.7 -63.9 -26.6 8.9 14.2 6.4 5 5 A E H > S+ 0 0 104 2,-0.2 4,-1.0 1,-0.2 -1,-0.2 0.906 102.1 46.5 -61.3 -44.9 8.7 13.2 10.1 6 6 A Q H > S+ 0 0 43 1,-0.2 4,-1.3 2,-0.2 3,-0.5 0.876 106.9 58.8 -65.6 -37.7 5.5 11.4 9.4 7 7 A K H X S+ 0 0 97 -4,-1.7 4,-2.0 1,-0.2 -1,-0.2 0.839 99.4 58.7 -60.0 -34.4 7.1 9.8 6.3 8 8 A A H X S+ 0 0 47 -4,-1.4 4,-1.6 1,-0.2 -1,-0.2 0.867 100.4 55.4 -63.9 -36.9 9.7 8.3 8.6 9 9 A R H X S+ 0 0 146 -4,-1.0 4,-1.3 -3,-0.5 -1,-0.2 0.877 107.4 50.4 -63.6 -36.9 7.0 6.5 10.6 10 10 A I H X S+ 0 0 8 -4,-1.3 4,-2.6 1,-0.2 5,-0.3 0.922 104.4 57.8 -64.7 -44.7 5.8 4.9 7.3 11 11 A K H X S+ 0 0 110 -4,-2.0 4,-0.5 1,-0.3 -1,-0.2 0.855 109.6 44.1 -55.7 -40.7 9.3 3.8 6.5 12 12 A W H < S+ 0 0 218 -4,-1.6 -1,-0.3 1,-0.2 -2,-0.2 0.816 115.2 49.4 -72.7 -30.2 9.5 1.8 9.7 13 13 A A H < S+ 0 0 21 -4,-1.3 -2,-0.2 -3,-0.2 -1,-0.2 0.832 100.2 59.8 -83.6 -34.8 6.0 0.3 9.3 14 14 A C H < S+ 0 0 1 -4,-2.6 2,-1.3 -5,-0.1 -1,-0.2 0.753 79.9 102.0 -66.8 -24.3 6.2 -1.0 5.7 15 15 A R < + 0 0 129 -4,-0.5 2,-0.2 -5,-0.3 -1,-0.1 -0.474 49.8 154.9 -66.5 92.1 9.1 -3.2 6.7 16 16 A R - 0 0 36 -2,-1.3 -2,-0.0 2,-0.5 6,-0.0 -0.448 61.3 -94.7-103.6-174.3 7.4 -6.6 7.0 17 17 A G S S+ 0 0 94 -2,-0.2 2,-0.4 2,-0.0 -2,-0.1 0.511 110.3 68.0 -80.6 -4.9 8.9 -10.1 6.7 18 18 A M S >> S- 0 0 70 1,-0.1 4,-1.0 0, 0.0 3,-0.5 -0.971 70.7-152.2-118.9 132.9 7.8 -10.1 3.1 19 19 A L H 3> S+ 0 0 110 -2,-0.4 4,-3.0 1,-0.2 5,-0.3 0.747 86.3 76.4 -74.3 -24.9 9.4 -7.9 0.5 20 20 A E H 3> S+ 0 0 85 1,-0.2 4,-0.7 2,-0.2 -1,-0.2 0.867 100.4 40.7 -56.0 -41.6 6.3 -7.7 -1.7 21 21 A L H X4 S+ 0 0 19 -3,-0.5 3,-0.6 2,-0.2 -1,-0.2 0.937 115.8 49.0 -73.8 -46.2 4.6 -5.3 0.7 22 22 A D H >X S+ 0 0 9 -4,-1.0 4,-2.8 1,-0.2 3,-1.2 0.888 110.1 51.8 -61.7 -39.4 7.6 -3.2 1.4 23 23 A V H 3< S+ 0 0 87 -4,-3.0 -1,-0.2 1,-0.3 5,-0.2 0.724 108.7 50.6 -74.4 -20.3 8.5 -2.8 -2.2 24 24 A V T << S+ 0 0 61 -4,-0.7 -1,-0.3 -3,-0.6 -2,-0.2 0.292 119.6 36.8 -99.9 10.3 5.0 -1.6 -3.1 25 25 A I T <> S+ 0 0 15 -3,-1.2 4,-2.7 -4,-0.2 5,-0.3 0.673 105.2 60.7-120.5 -49.1 5.0 1.0 -0.4 26 26 A M T < S+ 0 0 83 -4,-2.8 4,-0.4 1,-0.2 -3,-0.1 0.910 124.4 17.3 -53.5 -56.0 8.5 2.5 -0.1 27 27 A P T > S+ 0 0 52 0, 0.0 4,-0.8 0, 0.0 -1,-0.2 0.709 121.1 64.4 -89.8 -21.2 8.7 3.9 -3.7 28 28 A F H >> S+ 0 0 25 1,-0.2 4,-3.6 -5,-0.2 3,-0.7 0.871 94.7 59.0 -69.8 -37.0 5.0 3.8 -4.4 29 29 A F H 3X S+ 0 0 13 -4,-2.7 4,-2.5 1,-0.2 -1,-0.2 0.860 97.2 62.8 -58.4 -34.9 4.3 6.3 -1.7 30 30 A E H 34 S+ 0 0 134 -4,-0.4 4,-0.2 -5,-0.3 -1,-0.2 0.870 116.3 29.7 -57.7 -38.7 6.6 8.7 -3.6 31 31 A E H X< S+ 0 0 114 -4,-0.8 3,-1.1 -3,-0.7 4,-0.4 0.896 121.2 49.5 -85.0 -48.1 4.1 8.5 -6.5 32 32 A C H >X S+ 0 0 11 -4,-3.6 3,-1.3 1,-0.3 4,-1.0 0.726 92.8 76.6 -71.9 -22.6 0.9 7.9 -4.7 33 33 A F T 3< S+ 0 0 79 -4,-2.5 3,-0.4 -5,-0.3 -1,-0.3 0.849 91.0 57.2 -54.7 -35.6 1.5 10.8 -2.2 34 34 A D T <4 S+ 0 0 154 -3,-1.1 -1,-0.3 -4,-0.2 -2,-0.2 0.795 113.5 39.0 -64.9 -27.8 0.5 13.1 -5.1 35 35 A S T <4 S+ 0 0 66 -3,-1.3 2,-0.5 -4,-0.4 -1,-0.2 0.466 102.3 88.1-102.3 -5.4 -2.8 11.3 -5.3 36 36 A L < - 0 0 13 -4,-1.0 2,-0.2 -3,-0.4 37,-0.0 -0.848 61.7-155.1-103.4 126.8 -3.3 10.8 -1.6 37 37 A T > - 0 0 81 -2,-0.5 4,-3.1 1,-0.1 3,-0.3 -0.520 33.6-104.3 -90.0 164.8 -5.0 13.5 0.6 38 38 A E H > S+ 0 0 66 1,-0.2 4,-2.9 2,-0.2 5,-0.2 0.884 121.8 55.4 -56.5 -43.0 -4.5 13.9 4.3 39 39 A S H > S+ 0 0 100 2,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.894 113.8 40.6 -57.6 -42.0 -7.8 12.2 5.1 40 40 A E H > S+ 0 0 51 -3,-0.3 4,-1.8 1,-0.2 -2,-0.2 0.895 114.7 53.2 -70.8 -40.9 -6.7 9.2 3.1 41 41 A Q H X S+ 0 0 1 -4,-3.1 4,-3.2 1,-0.2 5,-0.2 0.843 103.1 57.4 -65.3 -35.5 -3.2 9.4 4.5 42 42 A D H X S+ 0 0 116 -4,-2.9 4,-2.4 2,-0.2 -1,-0.2 0.934 109.8 43.3 -61.1 -46.7 -4.5 9.4 8.1 43 43 A D H X S+ 0 0 48 -4,-1.2 4,-1.5 2,-0.2 -1,-0.2 0.840 114.6 52.4 -69.6 -32.1 -6.3 6.1 7.6 44 44 A F H X S+ 0 0 13 -4,-1.8 4,-1.6 2,-0.2 -2,-0.2 0.942 111.7 44.0 -66.7 -49.3 -3.3 4.7 5.8 45 45 A V H X S+ 0 0 22 -4,-3.2 4,-0.7 1,-0.2 -2,-0.2 0.867 109.7 57.7 -65.3 -36.7 -0.9 5.7 8.6 46 46 A A H >< S+ 0 0 48 -4,-2.4 3,-0.6 -5,-0.2 -1,-0.2 0.879 108.2 47.5 -59.0 -38.9 -3.4 4.3 11.1 47 47 A L H >< S+ 0 0 25 -4,-1.5 3,-2.6 1,-0.2 -1,-0.2 0.874 97.7 70.8 -67.4 -38.5 -3.2 1.0 9.3 48 48 A L H 3< S+ 0 0 8 -4,-1.6 -1,-0.2 1,-0.3 -2,-0.2 0.689 85.5 66.1 -60.5 -23.2 0.6 0.9 9.2 49 49 A E T << S+ 0 0 173 -4,-0.7 -1,-0.3 -3,-0.6 -2,-0.1 0.666 112.7 33.2 -73.2 -14.8 1.0 0.4 12.9 50 50 A S S < S- 0 0 80 -3,-2.6 2,-0.2 -4,-0.2 -3,-0.0 -0.343 97.3 -90.0-116.6-160.9 -0.6 -3.0 12.4 51 51 A D - 0 0 101 -2,-0.1 3,-0.1 -35,-0.0 -1,-0.1 -0.613 23.2-125.8-108.8 177.2 -0.6 -5.5 9.5 52 52 A D > + 0 0 20 -2,-0.2 4,-2.8 1,-0.1 5,-0.2 -0.506 45.5 148.5-123.5 63.8 -2.8 -5.9 6.5 53 53 A P H > S+ 0 0 91 0, 0.0 4,-1.2 0, 0.0 -1,-0.1 0.957 82.1 35.5 -62.7 -53.0 -4.1 -9.6 6.6 54 54 A D H > S+ 0 0 73 1,-0.2 4,-0.8 2,-0.2 10,-0.2 0.855 119.2 52.7 -69.3 -34.1 -7.5 -8.9 5.0 55 55 A L H >> S+ 0 0 13 2,-0.2 4,-1.4 1,-0.2 3,-0.5 0.870 103.0 56.5 -70.9 -38.3 -6.0 -6.3 2.7 56 56 A F H 3X S+ 0 0 57 -4,-2.8 4,-1.2 1,-0.3 -1,-0.2 0.870 104.3 55.2 -57.4 -37.2 -3.3 -8.6 1.5 57 57 A A H 3X>S+ 0 0 23 -4,-1.2 5,-3.0 1,-0.2 4,-0.8 0.772 100.3 58.7 -69.5 -26.5 -6.1 -10.9 0.5 58 58 A W H <<5S+ 0 0 90 -4,-0.8 -1,-0.2 -3,-0.5 -2,-0.2 0.870 103.6 52.3 -67.2 -36.0 -7.5 -8.0 -1.6 59 59 A V H <5S+ 0 0 75 -4,-1.4 -2,-0.2 1,-0.2 -1,-0.2 0.823 113.1 44.0 -66.9 -31.5 -4.3 -7.9 -3.5 60 60 A M H <5S- 0 0 82 -4,-1.2 -1,-0.2 -5,-0.1 -2,-0.2 0.562 120.3-112.6 -89.1 -11.3 -4.7 -11.7 -4.1 61 61 A G T <5S+ 0 0 63 -4,-0.8 -3,-0.2 -3,-0.1 -2,-0.1 0.917 95.1 84.4 82.0 46.4 -8.4 -11.1 -5.0 62 62 A H < + 0 0 175 -5,-3.0 -4,-0.2 -8,-0.2 2,-0.2 -0.045 61.9 114.9-168.4 47.7 -10.1 -12.9 -2.1 63 63 A G - 0 0 32 -6,-0.3 2,-0.4 -5,-0.1 -8,-0.1 -0.576 51.2-132.6-120.6-179.7 -10.3 -10.5 0.9 64 64 A R + 0 0 187 -10,-0.2 2,-0.4 -2,-0.2 -7,-0.1 -0.974 25.2 162.4-140.0 122.5 -12.8 -8.6 3.0 65 65 A C - 0 0 11 -2,-0.4 6,-0.1 1,-0.1 -2,-0.0 -0.897 10.4-179.1-142.7 108.5 -12.6 -5.0 4.0 66 66 A E S S+ 0 0 176 -2,-0.4 2,-1.2 1,-0.2 -1,-0.1 0.831 72.3 71.6 -79.9 -33.7 -15.8 -3.3 5.3 67 67 A N >> - 0 0 81 1,-0.2 3,-1.9 2,-0.0 4,-1.4 -0.713 66.4-167.7 -86.9 96.8 -14.3 0.2 5.8 68 68 A L H 3> S+ 0 0 114 -2,-1.2 4,-1.9 1,-0.3 -1,-0.2 0.544 78.7 79.0 -67.3 -6.8 -13.9 1.2 2.2 69 69 A G H 3> S+ 0 0 45 2,-0.2 4,-0.9 1,-0.1 -1,-0.3 0.897 102.5 37.1 -61.4 -41.5 -11.8 4.1 3.4 70 70 A L H <> S+ 0 0 20 -3,-1.9 4,-1.6 2,-0.2 3,-0.5 0.930 116.6 51.6 -71.7 -48.8 -9.0 1.6 3.7 71 71 A A H X S+ 0 0 5 -4,-1.4 4,-2.9 1,-0.2 -2,-0.2 0.781 100.6 66.9 -60.7 -27.4 -10.0 -0.3 0.6 72 72 A A H X S+ 0 0 40 -4,-1.9 4,-1.8 2,-0.2 -1,-0.2 0.944 104.6 40.0 -59.3 -50.5 -10.0 3.0 -1.3 73 73 A M H X S+ 0 0 10 -4,-0.9 4,-1.7 -3,-0.5 -1,-0.2 0.836 113.8 55.7 -72.1 -29.4 -6.3 3.5 -1.0 74 74 A V H X S+ 0 0 8 -4,-1.6 4,-3.1 2,-0.2 -2,-0.2 0.931 106.2 50.6 -63.8 -45.8 -5.8 -0.2 -1.7 75 75 A D H X S+ 0 0 109 -4,-2.9 4,-2.4 1,-0.2 -2,-0.2 0.892 108.7 52.2 -57.2 -41.7 -7.8 0.2 -5.0 76 76 A K H X S+ 0 0 55 -4,-1.8 4,-0.8 2,-0.2 -1,-0.2 0.839 111.7 46.8 -65.9 -34.0 -5.5 3.1 -5.9 77 77 A I H >X S+ 0 0 38 -4,-1.7 4,-1.7 2,-0.2 3,-0.7 0.938 110.8 51.4 -69.1 -48.1 -2.5 0.9 -5.2 78 78 A V H 3X S+ 0 0 42 -4,-3.1 4,-2.7 1,-0.3 -2,-0.2 0.869 102.0 60.9 -59.0 -39.4 -3.9 -2.0 -7.2 79 79 A A H 3X S+ 0 0 57 -4,-2.4 4,-0.6 1,-0.2 -1,-0.3 0.867 107.2 45.4 -56.6 -38.7 -4.6 0.2 -10.2 80 80 A H H X S+ 0 0 51 -4,-1.7 4,-2.2 1,-0.2 3,-0.7 0.851 97.5 68.2 -68.9 -35.7 -0.1 -2.7 -10.1 82 82 A L H 3X S+ 0 0 101 -4,-2.7 4,-2.4 1,-0.3 -1,-0.2 0.819 96.3 53.8 -55.5 -33.7 -2.5 -3.7 -12.8 83 83 A S H 3X S+ 0 0 59 -4,-0.6 4,-1.3 -3,-0.4 -1,-0.3 0.838 107.3 50.8 -73.7 -31.1 -0.2 -2.0 -15.4 84 84 A K H S+ 0 0 125 -4,-0.7 4,-1.8 -3,-0.7 5,-0.8 0.916 111.6 48.6 -65.8 -42.7 2.7 -4.1 -14.2 85 85 A V H X5S+ 0 0 40 -4,-2.2 4,-0.8 1,-0.2 -2,-0.2 0.905 113.9 44.5 -65.9 -43.2 0.6 -7.2 -14.5 86 86 A R H <5S+ 0 0 213 -4,-2.4 -1,-0.2 -5,-0.2 -2,-0.2 0.753 116.9 49.7 -73.0 -24.9 -0.6 -6.4 -18.0 87 87 A L H <5S- 0 0 128 -4,-1.3 -2,-0.2 -5,-0.2 -3,-0.2 0.979 141.2 -18.1 -77.0 -75.6 2.9 -5.4 -19.0 88 88 A E H <5S- 0 0 161 -4,-1.8 -3,-0.2 1,-0.4 -2,-0.1 0.139 94.7-120.9-123.6 18.9 5.3 -8.2 -17.9 89 89 A H << - 0 0 131 -4,-0.8 -1,-0.4 -5,-0.8 2,-0.3 -0.261 33.0 -91.3 70.4-161.7 3.0 -9.9 -15.4 90 90 A H - 0 0 61 -5,-0.1 2,-0.5 -3,-0.1 -9,-0.0 -0.909 18.3-126.6-143.8 167.8 4.0 -10.4 -11.8 91 91 A H S S+ 0 0 180 -2,-0.3 3,-0.0 1,-0.1 -2,-0.0 -0.971 76.6 71.2-128.1 119.6 5.7 -12.8 -9.4 92 92 A H S S- 0 0 76 -2,-0.5 2,-0.3 2,-0.1 -1,-0.1 -0.210 115.2 -3.3 178.3 -65.4 4.0 -14.1 -6.3 93 93 A H 0 0 132 0, 0.0 -3,-0.0 0, 0.0 -2,-0.0 -0.914 360.0 360.0-144.7 124.5 1.3 -16.4 -7.5 94 94 A H 0 0 208 -2,-0.3 -2,-0.1 -5,-0.0 0, 0.0 -0.654 360.0 360.0 68.5 360.0 0.9 -16.7 -11.3