==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 21-JUN-07 2JRB . COMPND 2 MOLECULE: ORF 1 PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR K.JANUSZYK,R.CLUBB . 65 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4841.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 45 69.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 13.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 25 38.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 289 A F > 0 0 171 0, 0.0 5,-2.9 0, 0.0 6,-0.4 0.000 360.0 360.0 360.0 -49.2 -18.3 2.9 2.9 2 290 A S T 5 + 0 0 75 3,-0.2 5,-0.4 1,-0.2 4,-0.1 0.898 360.0 33.4 -38.2 -62.6 -18.6 4.6 -0.5 3 291 A P T 5S+ 0 0 81 0, 0.0 4,-0.4 0, 0.0 -1,-0.2 0.943 138.0 16.0 -65.5 -52.7 -17.3 8.0 0.8 4 292 A E T >5S+ 0 0 154 2,-0.1 4,-1.2 3,-0.1 -2,-0.1 0.929 129.2 42.3 -90.1 -59.0 -14.8 6.9 3.5 5 293 A T H >5S+ 0 0 30 1,-0.2 4,-1.7 2,-0.2 3,-0.3 0.896 111.7 55.1 -59.4 -41.3 -14.1 3.2 3.0 6 294 A M H > S+ 0 0 117 -5,-0.4 4,-2.5 -4,-0.4 -1,-0.2 0.891 103.3 56.9 -53.7 -34.2 -11.1 6.1 -0.5 8 296 A A H X S+ 0 0 15 -4,-1.2 4,-1.7 -3,-0.3 -1,-0.2 0.978 115.7 32.6 -62.3 -53.4 -9.1 3.5 1.5 9 297 A R H X S+ 0 0 117 -4,-1.7 4,-0.7 2,-0.2 -2,-0.2 0.797 113.2 64.2 -75.1 -24.0 -9.2 0.9 -1.3 10 298 A R H >X S+ 0 0 145 -4,-3.8 3,-1.5 -5,-0.3 4,-1.3 0.969 103.5 46.9 -63.2 -46.3 -9.1 3.7 -3.9 11 299 A A H 3X S+ 0 0 22 -4,-2.5 4,-1.8 1,-0.3 3,-0.5 0.973 104.4 60.4 -57.7 -50.1 -5.6 4.7 -2.6 12 300 A W H 3X S+ 0 0 3 -4,-1.7 4,-0.9 1,-0.2 -1,-0.3 0.734 100.4 60.7 -50.6 -17.2 -4.7 1.0 -2.7 13 301 A T H < S+ 0 0 39 -4,-1.2 3,-4.1 -5,-0.2 4,-0.3 0.964 102.6 58.5 -73.3 -50.5 3.2 1.5 -8.6 19 307 A L H ><>S+ 0 0 11 -4,-3.7 3,-2.8 1,-0.3 5,-0.5 0.895 98.0 63.2 -46.0 -39.1 4.1 -1.5 -6.4 20 308 A R T 3<5S+ 0 0 151 -4,-0.9 -1,-0.3 -5,-0.4 -2,-0.2 0.749 90.2 67.7 -59.5 -18.3 4.3 -3.4 -9.7 21 309 A E T < 5S+ 0 0 95 -3,-4.1 -1,-0.3 -4,-0.2 -2,-0.2 0.507 107.0 44.2 -79.9 -0.4 7.1 -1.0 -10.5 22 310 A H T < 5S- 0 0 51 -3,-2.8 -3,-0.0 -4,-0.3 39,-0.0 -0.277 102.3 -96.3-118.9-152.9 9.1 -2.8 -7.7 23 311 A K T 5S+ 0 0 186 -2,-0.1 2,-0.8 14,-0.1 -3,-0.1 0.262 92.2 101.1-114.8 8.1 9.6 -6.5 -6.8 24 312 A C S +A 33 0A 75 4,-4.1 4,-0.5 -2,-0.6 -1,-0.0 -0.057 51.8 5.9 -94.0-158.6 -6.9 -7.7 1.1 30 318 A Y T >4 S- 0 0 159 2,-0.2 3,-3.5 1,-0.2 -1,-0.2 0.312 111.2 -68.2 -14.0 144.5 -10.0 -7.1 3.3 31 319 A P T 34 S+ 0 0 69 0, 0.0 -1,-0.2 0, 0.0 -22,-0.1 0.608 137.1 10.5 -21.1 -22.6 -12.4 -4.5 1.6 32 320 A A T 34 S+ 0 0 2 -24,-0.1 2,-0.4 -23,-0.1 -2,-0.2 0.214 99.2 112.2-150.3 23.0 -9.7 -1.9 2.3 33 321 A K E << -A 29 0A 82 -3,-3.5 -4,-4.1 -4,-0.5 2,-0.5 -0.838 44.2-162.0-103.6 136.7 -6.4 -3.7 3.5 34 322 A L E -AB 28 45A 2 11,-2.0 11,-1.5 -2,-0.4 2,-0.3 -0.956 2.9-165.2-120.1 122.2 -3.3 -3.7 1.2 35 323 A S E -AB 27 44A 9 -8,-1.8 -8,-1.3 -2,-0.5 2,-0.3 -0.804 4.9-170.5-105.8 146.7 -0.4 -6.2 1.7 36 324 A I E - B 0 43A 1 7,-2.0 7,-1.5 -2,-0.3 2,-0.7 -0.971 20.4-128.1-135.3 149.1 3.0 -5.8 0.1 37 325 A T E + B 0 42A 40 -2,-0.3 2,-0.3 -12,-0.2 5,-0.2 -0.850 39.9 152.4-102.2 113.4 6.0 -8.1 -0.1 38 326 A I S S- 0 0 40 3,-1.0 -2,-0.1 -2,-0.7 3,-0.0 -0.997 70.6 -9.7-138.9 142.3 9.4 -6.7 1.0 39 327 A D S S- 0 0 134 -2,-0.3 2,-2.3 1,-0.3 3,-0.1 0.806 115.4 -78.6 42.4 29.0 12.5 -8.4 2.5 40 328 A G S S+ 0 0 64 1,-0.2 -1,-0.3 0, 0.0 -2,-0.1 -0.200 111.7 112.5 77.8 -52.1 10.2 -11.5 2.6 41 329 A E - 0 0 154 -2,-2.3 -3,-1.0 -4,-0.1 2,-0.3 -0.322 66.6-138.9 -55.4 122.3 8.6 -10.1 5.8 42 330 A T E -B 37 0A 92 -5,-0.2 2,-0.3 -3,-0.1 -5,-0.2 -0.648 22.9-175.8 -86.9 141.9 5.0 -9.3 4.7 43 331 A K E -B 36 0A 93 -7,-1.5 -7,-2.0 -2,-0.3 2,-0.3 -0.947 3.8-164.8-133.9 154.3 3.4 -6.0 6.0 44 332 A V E -B 35 0A 53 -2,-0.3 2,-0.4 -9,-0.2 -9,-0.2 -0.959 5.7-161.0-139.9 158.8 -0.2 -4.6 5.6 45 333 A F E -B 34 0A 5 -11,-1.5 -11,-2.0 -2,-0.3 3,-0.1 -0.993 12.9-171.8-142.7 133.5 -2.0 -1.3 6.1 46 334 A H S S+ 0 0 73 -2,-0.4 2,-0.4 -13,-0.2 -1,-0.1 0.446 79.4 54.9-102.3 -1.9 -5.7 -0.5 6.5 47 335 A D S > S- 0 0 95 1,-0.1 4,-1.9 -13,-0.1 5,-0.2 -0.994 77.3-134.5-133.2 134.4 -5.2 3.3 6.3 48 336 A K H > S+ 0 0 104 -2,-0.4 4,-2.6 1,-0.2 5,-0.2 0.850 108.2 56.7 -56.0 -30.4 -3.5 5.3 3.5 49 337 A T H > S+ 0 0 80 2,-0.2 4,-3.3 1,-0.2 5,-0.3 0.983 102.0 51.5 -66.3 -55.3 -1.7 7.2 6.3 50 338 A K H > S+ 0 0 114 2,-0.2 4,-2.7 1,-0.2 -1,-0.2 0.921 113.5 47.5 -49.1 -43.1 -0.2 4.2 8.0 51 339 A F H X S+ 0 0 13 -4,-1.9 4,-1.8 2,-0.2 5,-0.3 0.996 110.6 48.9 -62.7 -60.1 1.2 3.2 4.5 52 340 A T H X S+ 0 0 78 -4,-2.6 4,-3.2 1,-0.3 -2,-0.2 0.904 112.6 51.3 -46.2 -41.2 2.6 6.6 3.7 53 341 A Q H X S+ 0 0 112 -4,-3.3 4,-2.0 2,-0.2 -1,-0.3 0.951 100.1 61.5 -63.7 -45.8 4.1 6.5 7.2 54 342 A Y H < S+ 0 0 57 -4,-2.7 -1,-0.2 -5,-0.3 -2,-0.2 0.902 115.1 35.2 -48.4 -39.6 5.7 3.1 6.5 55 343 A L H >< S+ 0 0 9 -4,-1.8 3,-3.6 2,-0.2 -1,-0.2 0.889 105.5 67.6 -82.6 -39.8 7.6 4.9 3.6 56 344 A S H 3< S+ 0 0 67 -4,-3.2 -2,-0.2 -5,-0.3 -1,-0.2 0.837 109.3 41.6 -49.1 -26.8 8.0 8.2 5.5 57 345 A T T 3< S+ 0 0 110 -4,-2.0 -1,-0.3 1,-0.2 -2,-0.2 0.422 119.5 46.8 -99.4 0.6 10.3 6.0 7.7 58 346 A N X> + 0 0 60 -3,-3.6 3,-1.7 -5,-0.2 4,-1.0 -0.546 62.8 177.8-141.3 72.1 11.8 4.2 4.7 59 347 A P H 3> + 0 0 71 0, 0.0 4,-2.5 0, 0.0 5,-0.4 0.791 69.4 83.5 -46.1 -33.5 12.8 6.8 2.1 60 348 A A H 3> S+ 0 0 43 1,-0.2 4,-1.3 2,-0.2 5,-0.2 0.896 100.3 36.3 -41.4 -46.9 14.2 4.1 -0.2 61 349 A L H <> S+ 0 0 16 -3,-1.7 4,-2.9 2,-0.2 -1,-0.2 0.965 110.0 61.7 -73.4 -51.7 10.6 3.4 -1.4 62 350 A Q H < S+ 0 0 86 -4,-1.0 -2,-0.2 1,-0.3 -1,-0.2 0.895 107.2 45.8 -41.3 -50.4 9.5 7.1 -1.4 63 351 A R H < S+ 0 0 198 -4,-2.5 -1,-0.3 2,-0.2 -2,-0.2 0.938 122.6 36.3 -62.9 -44.4 12.2 8.0 -4.0 64 352 A I H < 0 0 76 -4,-1.3 -2,-0.2 -5,-0.4 -3,-0.2 0.986 360.0 360.0 -74.4 -60.2 11.4 5.0 -6.2 65 353 A I < 0 0 78 -4,-2.9 -1,-0.2 -5,-0.2 -3,-0.2 0.585 360.0 360.0 -57.1 360.0 7.6 4.8 -5.8