==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 27-JUN-07 2JRM . COMPND 2 MOLECULE: RIBOSOME MODULATION FACTOR; . SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS; . AUTHOR Y.TANG,P.ROSSI,G.SWAPNA,H.WANG,M.JIANG,K.CUNNINGHAM,L.OWENS, . 60 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5523.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 78.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 13.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 51.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 192 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 120.3 17.4 -4.3 15.8 2 2 A K + 0 0 201 0, 0.0 2,-0.7 0, 0.0 3,-0.2 0.387 360.0 62.9-152.8 -41.3 19.6 -4.8 12.8 3 3 A R >> + 0 0 190 1,-0.2 4,-0.9 2,-0.1 3,-0.6 -0.254 62.2 134.6 -91.0 47.3 17.5 -6.4 10.0 4 4 A Q H 3> + 0 0 111 -2,-0.7 4,-0.9 1,-0.2 -1,-0.2 0.335 47.5 84.1 -85.1 8.3 15.3 -3.3 9.9 5 5 A K H 34 S+ 0 0 126 -3,-0.2 4,-0.5 2,-0.1 -1,-0.2 0.939 100.7 32.6 -70.9 -47.9 15.3 -3.1 6.1 6 6 A R H X> S+ 0 0 107 -3,-0.6 4,-3.5 1,-0.1 3,-0.7 0.870 108.7 72.1 -75.4 -36.8 12.5 -5.6 5.8 7 7 A D H 3X S+ 0 0 40 -4,-0.9 4,-1.7 1,-0.3 5,-0.3 0.893 100.0 39.4 -48.2 -62.2 10.7 -4.6 9.0 8 8 A R H 3X S+ 0 0 107 -4,-0.9 4,-0.8 1,-0.2 -1,-0.3 0.729 122.1 45.3 -68.3 -19.8 9.3 -1.2 8.0 9 9 A L H <> S+ 0 0 7 -3,-0.7 4,-2.2 -4,-0.5 -1,-0.2 0.810 104.7 60.2 -89.8 -34.7 8.4 -2.5 4.5 10 10 A E H X S+ 0 0 75 -4,-3.5 4,-0.6 1,-0.2 -2,-0.2 0.853 115.5 36.1 -59.4 -34.9 6.9 -5.8 5.7 11 11 A R H X S+ 0 0 144 -4,-1.7 4,-2.8 -5,-0.3 -1,-0.2 0.746 110.7 60.8 -91.9 -26.6 4.4 -3.6 7.6 12 12 A A H X S+ 0 0 0 -4,-0.8 4,-3.0 -5,-0.3 5,-0.2 0.817 97.6 62.7 -63.3 -30.9 4.2 -1.1 4.8 13 13 A Q H X S+ 0 0 103 -4,-2.2 4,-1.0 2,-0.2 -1,-0.2 0.905 111.4 35.0 -60.0 -42.7 3.0 -4.0 2.7 14 14 A S H X S+ 0 0 80 -4,-0.6 4,-2.2 2,-0.2 -2,-0.2 0.875 116.3 55.0 -79.2 -39.2 -0.0 -4.3 4.9 15 15 A Q H X S+ 0 0 72 -4,-2.8 4,-2.7 1,-0.2 -2,-0.2 0.900 105.8 52.6 -60.7 -43.4 -0.3 -0.6 5.5 16 16 A G H X S+ 0 0 0 -4,-3.0 4,-1.0 2,-0.2 -1,-0.2 0.890 107.5 51.8 -61.0 -40.4 -0.4 0.1 1.8 17 17 A Y H >X S+ 0 0 84 -4,-1.0 4,-1.0 -5,-0.2 3,-0.9 0.951 112.9 44.1 -60.4 -49.7 -3.2 -2.4 1.4 18 18 A K H 3X>S+ 0 0 113 -4,-2.2 4,-3.9 1,-0.3 5,-0.9 0.867 107.2 60.8 -63.0 -36.3 -5.3 -0.7 4.1 19 19 A A H 3<5S+ 0 0 5 -4,-2.7 5,-0.5 3,-0.3 -1,-0.3 0.735 97.1 61.7 -64.1 -21.9 -4.4 2.7 2.6 20 20 A G H <<5S+ 0 0 9 -4,-1.0 -1,-0.2 -3,-0.9 -2,-0.2 0.916 118.3 25.1 -66.8 -43.2 -6.1 1.5 -0.5 21 21 A L H <5S+ 0 0 84 -4,-1.0 -2,-0.2 -3,-0.4 -3,-0.1 0.905 144.3 15.6 -85.6 -48.4 -9.4 1.2 1.4 22 22 A N T <5S+ 0 0 113 -4,-3.9 -3,-0.3 -5,-0.1 -2,-0.1 0.817 123.4 53.2 -98.2 -37.5 -8.9 3.7 4.2 23 23 A G S S- 0 0 52 -2,-2.9 3,-0.7 -3,-0.1 -3,-0.0 -0.506 79.3-112.0-120.0 176.7 -4.2 7.9 -1.8 26 26 A Q G > S+ 0 0 90 1,-0.2 3,-0.9 -2,-0.2 -2,-0.1 0.459 100.7 87.5 -85.6 -5.9 -0.4 7.4 -2.0 27 27 A E G 3 S+ 0 0 192 1,-0.3 -1,-0.2 -4,-0.1 2,-0.1 0.733 80.4 63.8 -63.0 -21.1 -0.1 10.7 -0.2 28 28 A A G < + 0 0 50 -3,-0.7 -1,-0.3 -5,-0.2 -2,-0.1 -0.193 66.6 119.6-101.1 40.3 -0.3 8.7 3.0 29 29 A C < + 0 0 57 -3,-0.9 2,-0.4 -2,-0.1 -1,-0.1 -0.724 29.6 164.9-106.7 82.0 2.9 6.7 2.5 30 30 A P + 0 0 98 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.180 52.6 66.4 -97.4 42.0 5.0 7.7 5.6 31 31 A Y S S- 0 0 68 1,-0.6 2,-0.1 -2,-0.4 -22,-0.1 0.356 102.0 -16.6-119.4-105.9 7.6 4.9 5.5 32 32 A Q - 0 0 65 1,-0.2 -1,-0.6 -24,-0.2 8,-0.0 -0.359 53.8-140.0 -93.5 178.0 10.3 4.5 2.9 33 33 A Q S > S+ 0 0 168 -2,-0.1 4,-1.2 -3,-0.1 -1,-0.2 0.758 88.5 14.7-101.6 -75.4 10.2 6.1 -0.6 34 34 A V H > S+ 0 0 109 2,-0.2 4,-1.7 1,-0.2 3,-0.2 0.929 132.7 44.5 -70.5 -47.0 11.5 3.7 -3.3 35 35 A D H > S+ 0 0 57 1,-0.2 4,-1.2 2,-0.2 -1,-0.2 0.790 112.5 54.4 -69.9 -26.0 11.3 0.5 -1.3 36 36 A A H >>S+ 0 0 3 2,-0.2 5,-2.0 3,-0.2 4,-0.7 0.741 101.0 60.5 -78.7 -25.0 7.9 1.6 -0.1 37 37 A R H <>S+ 0 0 158 -4,-1.2 5,-0.6 -3,-0.2 4,-0.4 0.983 109.0 41.1 -59.1 -53.8 6.8 2.0 -3.6 38 38 A S H <5S+ 0 0 80 -4,-1.7 -2,-0.2 3,-0.2 -1,-0.2 0.756 132.0 26.9 -70.5 -24.3 7.5 -1.7 -4.3 39 39 A Y H X5S+ 0 0 83 -4,-1.2 4,-1.8 -5,-0.2 5,-0.2 0.868 130.3 30.5 -97.0 -69.6 6.0 -2.7 -1.0 40 40 A W H X5S+ 0 0 3 -4,-0.7 4,-2.0 1,-0.2 -3,-0.2 0.898 124.6 45.4 -61.2 -45.0 3.4 -0.1 0.2 41 41 A L H >< S+ 0 0 122 -4,-1.6 3,-0.7 -5,-0.3 -2,-0.2 0.837 99.5 54.1 -78.6 -36.0 -12.4 -2.2 -8.3 53 53 A S H >< S+ 0 0 76 -4,-1.6 3,-0.6 1,-0.2 -1,-0.2 0.772 98.9 65.1 -68.7 -25.2 -12.8 -5.5 -10.1 54 54 A G T 3< S+ 0 0 64 -4,-0.7 2,-0.7 1,-0.3 -1,-0.2 0.779 91.6 64.7 -67.3 -26.2 -15.9 -6.1 -8.1 55 55 A L T X + 0 0 122 -3,-0.7 2,-2.5 -4,-0.4 3,-0.5 -0.303 63.6 153.8 -92.6 49.3 -17.5 -3.1 -9.8 56 56 A Y T < + 0 0 178 -2,-0.7 -1,-0.1 -3,-0.6 -3,-0.1 -0.470 22.5 126.9 -77.5 68.7 -17.5 -4.8 -13.2 57 57 A K T 3 + 0 0 174 -2,-2.5 2,-0.2 1,-0.1 -1,-0.2 0.885 67.6 39.7 -86.6 -54.1 -20.5 -2.8 -14.4 58 58 A L S < S- 0 0 121 -3,-0.5 -1,-0.1 1,-0.1 -3,-0.0 -0.627 71.9-139.6 -95.8 156.6 -18.9 -1.5 -17.6 59 59 A E 0 0 150 -2,-0.2 -1,-0.1 1,-0.2 -3,-0.0 0.705 360.0 360.0 -85.2 -19.2 -16.6 -3.4 -19.9 60 60 A H 0 0 210 -3,-0.0 -1,-0.2 0, 0.0 -4,-0.0 0.508 360.0 360.0 -68.7 360.0 -14.4 -0.4 -20.4