==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-APR-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIMICROBIAL PROTEIN 02-JUL-07 2JS9 . COMPND 2 MOLECULE: SAPOSIN-LIKE PROTEIN FAMILY PROTEIN 5; . SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; . AUTHOR J.MYSLIWY,J.GROTZINGER . 81 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4868.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 76.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 16 19.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 38 46.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 1 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A R 0 0 170 0, 0.0 47,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 142.4 1.6 -12.1 -0.1 2 2 A S + 0 0 105 79,-0.1 0, 0.0 0, 0.0 0, 0.0 0.926 360.0 52.9 86.5 79.5 3.6 -13.1 -3.1 3 3 A A S S+ 0 0 57 0, 0.0 4,-0.1 0, 0.0 0, 0.0 -0.134 123.9 3.8 161.9 -47.9 2.2 -11.5 -6.2 4 4 A L S > S+ 0 0 24 2,-0.1 3,-2.1 3,-0.1 5,-0.1 0.624 80.1 122.3-123.6 -64.7 1.9 -7.8 -5.5 5 5 A S T 3> S+ 0 0 5 1,-0.3 4,-2.1 2,-0.2 5,-0.3 -0.033 86.9 38.9 35.0 -96.0 3.3 -6.9 -2.1 6 6 A a H >> S+ 0 0 29 73,-0.5 4,-1.8 1,-0.3 3,-1.1 0.910 115.9 54.0 -38.2 -64.2 5.9 -4.4 -3.3 7 7 A Q H X> S+ 0 0 98 -3,-2.1 3,-1.2 1,-0.3 4,-0.5 0.882 106.8 51.1 -36.6 -59.1 3.4 -3.1 -5.9 8 8 A M H >> S+ 0 0 1 1,-0.3 4,-2.3 2,-0.2 3,-1.7 0.867 106.3 55.0 -48.7 -42.3 0.9 -2.6 -3.1 9 9 A b H S+ 0 0 2 -4,-1.8 4,-1.7 2,-0.3 5,-1.0 0.982 109.9 53.5 -62.8 -59.8 2.8 5.4 -1.0 14 14 A K H <5S+ 0 0 108 -4,-0.7 4,-0.4 1,-0.3 -1,-0.2 0.816 116.0 43.5 -44.0 -34.4 1.8 6.7 -4.4 15 15 A K H <5S+ 0 0 35 -4,-2.2 -1,-0.3 2,-0.1 -2,-0.3 0.869 124.6 34.5 -79.3 -40.2 -1.4 7.6 -2.6 16 16 A Y H >X5S+ 0 0 9 -4,-2.7 3,-3.1 -5,-0.2 4,-0.6 0.985 118.7 45.7 -76.3 -70.0 0.4 9.0 0.4 17 17 A E T 3<5S+ 0 0 83 -4,-1.7 -3,-0.2 1,-0.3 -1,-0.1 0.813 129.2 33.1 -42.4 -36.2 3.5 10.5 -1.0 18 18 A G T 34 - 0 0 78 -7,-0.1 4,-1.2 1,-0.1 3,-0.2 -0.940 55.0-155.6-146.1 118.5 -3.7 11.3 5.9 24 24 A A H > S+ 0 0 40 -2,-0.3 4,-1.8 1,-0.2 5,-0.3 0.600 99.6 62.2 -66.1 -9.9 -3.3 7.6 6.1 25 25 A N H > S+ 0 0 96 2,-0.2 4,-1.3 3,-0.2 -1,-0.2 0.926 107.7 37.0 -79.9 -50.2 -7.1 7.6 6.1 26 26 A V H > S+ 0 0 58 -3,-0.2 4,-0.7 3,-0.2 -2,-0.2 0.594 125.5 46.6 -76.6 -11.5 -7.5 9.1 2.6 27 27 A I H X S+ 0 0 0 -4,-1.2 4,-2.9 2,-0.2 5,-0.3 0.914 108.7 46.0 -91.1 -70.9 -4.4 7.1 1.7 28 28 A K H X S+ 0 0 44 -4,-1.8 4,-1.4 1,-0.3 -3,-0.2 0.840 120.6 45.9 -40.1 -41.3 -5.0 3.6 3.0 29 29 A K H X S+ 0 0 122 -4,-1.3 4,-1.1 -5,-0.3 -1,-0.3 0.952 108.1 54.6 -68.4 -51.7 -8.5 4.0 1.5 30 30 A D H >X S+ 0 0 54 -4,-0.7 3,-2.0 1,-0.2 4,-1.5 0.919 104.4 56.1 -46.4 -53.0 -7.2 5.4 -1.8 31 31 A F H 3< S+ 0 0 0 -4,-2.9 -1,-0.2 1,-0.3 5,-0.2 0.906 101.0 55.8 -45.5 -53.1 -5.0 2.4 -2.2 32 32 A D H >X S+ 0 0 48 -4,-1.4 4,-2.9 -5,-0.3 3,-0.6 0.771 105.0 58.0 -52.3 -26.2 -8.0 0.1 -1.9 33 33 A A H S+ 0 0 0 -3,-0.6 4,-3.7 -5,-0.2 -2,-0.2 0.655 109.0 41.5-121.1 -50.9 -6.2 -2.0 -5.5 36 36 A K H < S+ 0 0 100 -4,-2.9 10,-0.2 2,-0.2 -3,-0.2 0.968 125.8 35.9 -64.6 -55.4 -9.7 -3.4 -5.7 37 37 A K T >< S+ 0 0 172 -4,-1.4 3,-1.0 -5,-0.4 4,-0.3 0.917 124.0 45.3 -63.8 -44.9 -10.4 -2.2 -9.2 38 38 A L G >4 S+ 0 0 86 -5,-0.4 3,-0.5 1,-0.3 -2,-0.2 0.977 127.3 28.4 -61.8 -58.5 -6.8 -2.8 -10.2 39 39 A F G >< S+ 0 0 14 -4,-3.7 3,-0.7 1,-0.2 7,-0.7 -0.114 88.5 116.3 -95.0 34.8 -6.6 -6.2 -8.6 40 40 A H G < S+ 0 0 128 -3,-1.0 2,-0.8 1,-0.3 -1,-0.2 0.881 73.1 54.1 -68.4 -39.7 -10.3 -6.8 -9.1 41 41 A T G < S+ 0 0 109 -3,-0.5 -1,-0.3 -4,-0.3 -4,-0.1 -0.301 91.3 107.7 -90.9 49.0 -9.6 -9.7 -11.4 42 42 A I S X S- 0 0 53 -2,-0.8 3,-1.0 -3,-0.7 4,-0.3 -0.984 71.4-137.1-130.5 139.9 -7.5 -11.4 -8.8 43 43 A P T 3 S+ 0 0 111 0, 0.0 -3,-0.1 0, 0.0 -2,-0.1 0.299 111.9 16.0 -75.0 11.0 -8.2 -14.5 -6.7 44 44 A F T 3> S+ 0 0 104 -5,-0.2 4,-0.5 3,-0.0 -4,-0.1 0.063 97.2 104.6-174.1 40.1 -6.7 -12.6 -3.9 45 45 A G H <> S+ 0 0 0 -3,-1.0 4,-2.5 -6,-0.3 -5,-0.2 0.919 85.8 34.8 -90.9 -72.2 -6.5 -8.9 -4.8 46 46 A T H > S+ 0 0 43 -7,-0.7 4,-2.4 -4,-0.3 5,-0.2 0.840 120.3 55.1 -52.3 -36.3 -9.3 -7.1 -2.9 47 47 A R H > S+ 0 0 174 1,-0.2 4,-0.8 2,-0.2 -1,-0.2 0.968 110.3 41.5 -61.8 -56.6 -8.6 -9.5 -0.1 48 48 A E H < S+ 0 0 30 -4,-0.5 -1,-0.2 1,-0.2 -2,-0.2 0.782 110.6 62.4 -61.8 -27.7 -4.9 -8.7 0.2 49 49 A c H >X S+ 0 0 0 -4,-2.5 4,-2.7 1,-0.3 3,-2.6 0.979 106.3 40.7 -60.9 -58.7 -5.9 -5.1 -0.3 50 50 A D H 3< S+ 0 0 107 -4,-2.4 -1,-0.3 1,-0.3 -2,-0.2 0.617 115.2 56.2 -64.8 -11.3 -8.0 -4.9 2.9 51 51 A H T 3< S+ 0 0 97 -4,-0.8 -1,-0.3 -5,-0.2 -2,-0.2 0.377 112.7 40.7 -99.2 0.3 -5.1 -7.0 4.3 52 52 A Y T X>>S+ 0 0 0 -3,-2.6 2,-2.5 -5,-0.1 4,-2.3 0.754 101.6 63.2-111.5 -48.7 -2.6 -4.3 3.3 53 53 A V T 3<5S+ 0 0 12 -4,-2.7 -1,-0.1 1,-0.3 -4,-0.1 -0.279 109.4 45.6 -76.9 53.4 -4.3 -1.0 4.1 54 54 A N T 345S+ 0 0 101 -2,-2.5 -1,-0.3 -3,-0.2 -4,-0.0 0.137 127.8 13.7 175.5 39.0 -4.3 -2.0 7.7 55 55 A S T <45S+ 0 0 57 -3,-1.1 -2,-0.2 0, 0.0 -3,-0.1 0.046 129.6 42.2 173.8 -40.1 -0.9 -3.4 8.5 56 56 A K T X5S+ 0 0 49 -4,-2.3 4,-0.7 2,-0.1 -3,-0.2 0.332 109.2 61.1-106.5 1.8 1.4 -2.5 5.7 57 57 A V H >> S+ 0 0 32 0, 0.0 3,-0.9 0, 0.0 4,-0.9 0.951 116.2 52.4 -75.0 -53.5 4.6 0.9 8.5 60 60 A I H >X S+ 0 0 0 -4,-0.7 3,-2.0 1,-0.3 4,-1.6 0.922 112.8 45.6 -46.7 -53.5 5.1 1.9 4.9 61 61 A I H 3X S+ 0 0 6 -4,-1.0 4,-2.2 1,-0.3 -1,-0.3 0.734 103.7 66.3 -63.0 -22.1 3.8 5.3 5.8 62 62 A H H <> S+ 0 0 93 -3,-0.9 4,-0.9 -4,-0.3 -1,-0.3 0.700 103.4 46.2 -71.3 -19.8 6.1 5.1 8.7 63 63 A E H S+ 0 0 2 -3,-2.0 4,-2.4 -4,-0.9 5,-1.9 0.880 112.8 45.6 -87.3 -45.9 9.0 5.1 6.2 64 64 A L H <5S+ 0 0 12 -4,-1.6 -2,-0.2 1,-0.2 -3,-0.1 0.841 114.4 51.4 -65.5 -34.2 7.8 8.0 4.0 65 65 A E H <5S+ 0 0 137 -4,-2.2 -1,-0.2 -5,-0.2 -2,-0.2 0.900 109.9 48.3 -68.8 -42.6 7.0 9.9 7.2 66 66 A G H <5S- 0 0 72 -4,-0.9 -2,-0.2 -5,-0.2 -1,-0.2 0.899 129.9 -92.5 -64.1 -43.1 10.5 9.3 8.6 67 67 A G T <5S+ 0 0 61 -4,-2.4 -3,-0.2 1,-0.3 -4,-0.1 0.129 79.3 137.7 149.4 -18.0 12.1 10.3 5.3 68 68 A T < - 0 0 31 -5,-1.9 -1,-0.3 -6,-0.2 -2,-0.0 -0.165 54.6-113.7 -54.3 147.4 12.5 7.1 3.5 69 69 A A > - 0 0 48 1,-0.1 2,-2.5 4,-0.0 4,-1.1 -0.405 30.9 -98.0 -82.5 161.7 11.6 7.2 -0.2 70 70 A P T 4 S+ 0 0 29 0, 0.0 -1,-0.1 0, 0.0 -56,-0.1 -0.232 120.6 47.0 -75.0 50.6 8.6 5.3 -1.7 71 71 A K T > S+ 0 0 132 -2,-2.5 4,-0.7 -58,-0.0 9,-0.1 0.339 107.1 46.9-152.6 -44.9 11.0 2.5 -2.8 72 72 A D H > S+ 0 0 78 -3,-0.5 4,-2.9 2,-0.1 5,-0.1 0.532 99.4 80.9 -84.4 -8.2 13.2 1.6 0.2 73 73 A V H >X S+ 0 0 0 -4,-1.1 4,-1.7 2,-0.2 3,-1.2 0.958 94.9 33.6 -58.8 -92.2 10.1 1.6 2.3 74 74 A b H 34>S+ 0 0 1 1,-0.3 5,-4.6 2,-0.2 3,-0.3 0.831 119.1 58.4 -29.6 -52.4 8.4 -1.8 1.7 75 75 A T H ><5S+ 0 0 64 -4,-0.7 3,-2.5 4,-0.3 -1,-0.3 0.925 101.9 51.2 -45.2 -57.8 12.0 -3.0 1.4 76 76 A K H <<5S+ 0 0 140 -4,-2.9 -1,-0.3 -3,-1.2 -2,-0.2 0.876 111.9 48.3 -48.2 -42.6 12.9 -1.8 4.9 77 77 A L T 3<5S- 0 0 49 -4,-1.7 -1,-0.3 -3,-0.3 -2,-0.2 -0.106 120.5-112.6 -90.7 35.0 9.8 -3.7 6.0 78 78 A N T < 5S+ 0 0 128 -3,-2.5 -3,-0.3 -5,-0.2 -2,-0.2 0.778 92.1 117.8 37.8 31.4 11.0 -6.7 4.0 79 79 A E < + 0 0 9 -5,-4.6 -73,-0.5 -6,-0.3 -4,-0.3 0.804 45.6 103.3 -91.9 -36.9 7.9 -5.8 2.0 80 80 A a 0 0 11 1,-0.5 -1,-0.1 -7,-0.2 -2,-0.1 -0.851 360.0 360.0-103.1 135.6 9.7 -5.1 -1.2 81 81 A P 0 0 131 0, 0.0 -1,-0.5 0, 0.0 -74,-0.1 -0.569 360.0 360.0 -75.0 360.0 9.8 -6.8 -3.4