==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-APR-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ANTIMICROBIAL PROTEIN 02-JUL-07 2JSA . COMPND 2 MOLECULE: SAPOSIN-LIKE PROTEIN FAMILY PROTEIN 5; . SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; . AUTHOR J.MYSLIWY,J.GROTZINGER . 81 1 3 3 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5169.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 77.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 18.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 40 49.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A R 0 0 234 0, 0.0 3,-0.1 0, 0.0 79,-0.1 0.000 360.0 360.0 360.0 -71.8 14.2 4.6 -0.1 2 2 A S + 0 0 103 78,-0.6 2,-0.2 77,-0.2 78,-0.1 0.972 360.0 82.5 53.7 85.7 12.4 7.8 -1.2 3 3 A A S >> S- 0 0 66 77,-0.6 3,-1.4 0, 0.0 4,-0.6 -0.835 101.9 -27.0-175.0-148.2 10.7 6.7 -4.4 4 4 A L H 3> S+ 0 0 56 1,-0.3 4,-2.1 -2,-0.2 5,-0.2 0.642 110.6 93.2 -63.1 -13.4 7.5 5.0 -5.6 5 5 A S H 3> S+ 0 0 18 1,-0.2 4,-1.5 2,-0.2 -1,-0.3 0.894 85.4 47.0 -45.0 -49.2 7.7 3.3 -2.3 6 6 A a H X> S+ 0 0 21 -3,-1.4 4,-1.7 74,-0.5 3,-0.8 0.965 104.1 61.4 -58.1 -55.6 5.4 6.0 -0.9 7 7 A Q H >< S+ 0 0 117 -4,-0.6 3,-1.4 1,-0.3 4,-0.5 0.872 102.1 52.0 -34.9 -59.6 3.1 5.7 -3.8 8 8 A M H >X S+ 0 0 8 -4,-2.1 3,-2.6 1,-0.3 4,-2.2 0.892 105.2 54.6 -46.2 -49.0 2.4 2.1 -2.9 9 9 A b H S+ 0 0 10 -3,-2.6 4,-0.9 -4,-0.5 -2,-0.2 0.831 110.3 40.6 -92.4 -41.5 -2.2 2.5 -3.0 12 12 A V H X S+ 0 0 0 -4,-2.2 4,-2.4 2,-0.2 -2,-0.2 0.938 122.4 41.1 -71.6 -49.4 -3.0 0.4 0.0 13 13 A V H X>S+ 0 0 1 -4,-1.8 4,-2.2 2,-0.3 5,-0.9 0.975 111.2 54.7 -61.7 -58.1 -4.4 3.2 2.1 14 14 A K H <5S+ 0 0 125 -4,-0.5 4,-0.4 1,-0.3 -1,-0.2 0.808 115.7 42.7 -45.0 -32.9 -6.2 4.8 -0.9 15 15 A K H <5S+ 0 0 51 -4,-0.9 -1,-0.3 2,-0.1 -2,-0.3 0.829 120.2 42.5 -82.5 -36.1 -7.8 1.4 -1.2 16 16 A Y H ><5S+ 0 0 30 -4,-2.4 3,-1.0 1,-0.2 4,-0.2 0.992 118.6 39.5 -72.2 -67.5 -8.3 1.0 2.5 17 17 A E T 3<5S+ 0 0 105 -4,-2.2 2,-0.3 1,-0.3 -3,-0.2 0.790 129.0 39.1 -52.9 -29.4 -9.6 4.5 3.5 18 18 A G T 3 - 0 0 66 1,-0.1 4,-1.1 -7,-0.1 -1,-0.2 -0.811 36.0-160.0 -92.9 114.8 -11.7 -5.3 4.4 24 24 A A H > S+ 0 0 40 -2,-0.7 4,-1.2 1,-0.2 -1,-0.1 0.600 95.2 55.7 -66.6 -10.2 -8.0 -5.1 4.9 25 25 A N H > S+ 0 0 105 2,-0.2 4,-1.1 3,-0.1 -1,-0.2 0.921 111.7 36.2 -85.7 -53.8 -8.0 -8.3 2.8 26 26 A V H > S+ 0 0 71 1,-0.2 4,-1.1 2,-0.2 -2,-0.2 0.523 117.4 59.9 -76.1 -5.6 -9.9 -7.0 -0.2 27 27 A I H X S+ 0 0 0 -4,-1.1 4,-1.6 2,-0.2 -1,-0.2 0.917 103.7 44.0 -85.5 -52.5 -8.0 -3.8 0.4 28 28 A K H X S+ 0 0 24 -4,-1.2 4,-1.6 1,-0.2 -2,-0.2 0.756 113.6 56.4 -63.4 -24.4 -4.4 -5.1 0.1 29 29 A K H X S+ 0 0 127 -4,-1.1 4,-1.7 2,-0.2 -1,-0.2 0.935 99.5 55.8 -72.0 -48.9 -5.7 -7.0 -2.9 30 30 A D H X S+ 0 0 59 -4,-1.1 4,-1.5 1,-0.2 5,-0.3 0.876 105.6 55.9 -49.9 -41.7 -6.9 -3.8 -4.7 31 31 A F H X S+ 0 0 0 -4,-1.6 4,-3.3 1,-0.3 5,-0.3 0.971 107.1 44.3 -55.0 -62.1 -3.4 -2.5 -4.3 32 32 A D H X S+ 0 0 20 -4,-1.6 4,-0.9 1,-0.2 -1,-0.3 0.725 105.1 73.3 -56.0 -20.9 -1.7 -5.4 -6.1 33 33 A A H >X S+ 0 0 47 -4,-1.7 4,-1.5 2,-0.2 3,-0.5 0.990 115.8 13.3 -55.8 -72.1 -4.6 -5.0 -8.5 34 34 A E H 3X>S+ 0 0 50 -4,-1.5 4,-1.4 1,-0.2 5,-1.2 0.873 117.6 72.2 -73.2 -39.4 -3.3 -1.8 -10.2 35 35 A c H 3<5S+ 0 0 1 -4,-3.3 -1,-0.2 -5,-0.3 -3,-0.2 0.758 106.2 43.4 -46.7 -24.5 0.1 -2.1 -8.6 36 36 A K H <<5S+ 0 0 101 -4,-0.9 -2,-0.2 -3,-0.5 -1,-0.2 0.941 126.8 26.2 -85.2 -60.5 0.3 -4.9 -11.2 37 37 A K H ><5S+ 0 0 173 -4,-1.5 3,-2.9 2,-0.2 4,-0.4 0.992 123.0 50.8 -66.1 -63.7 -1.2 -3.3 -14.2 38 38 A L T 3<5S+ 0 0 94 -4,-1.4 3,-0.2 1,-0.3 -3,-0.2 0.865 129.7 25.3 -40.1 -46.6 -0.4 0.3 -13.3 39 39 A F T > S- 0 0 64 -3,-0.8 2,-0.9 -6,-0.2 4,-0.5 -0.916 74.2-111.1-117.7 143.1 8.1 -1.9 -13.8 43 43 A P T 4 S- 0 0 117 0, 0.0 -2,-0.1 0, 0.0 -3,-0.0 -0.610 101.3 -20.7 -75.0 103.9 11.3 -3.6 -12.7 44 44 A F T > S+ 0 0 137 -2,-0.9 4,-3.7 3,-0.1 5,-0.3 0.444 107.8 123.6 76.3 0.0 10.4 -5.7 -9.6 45 45 A G H > S+ 0 0 7 -3,-0.3 4,-2.5 1,-0.2 -5,-0.1 0.975 76.9 37.1 -54.0 -65.1 7.4 -3.4 -9.3 46 46 A T H X S+ 0 0 32 -7,-0.6 4,-1.7 -4,-0.5 -1,-0.2 0.807 117.0 57.5 -58.1 -30.8 4.7 -6.0 -9.4 47 47 A R H > S+ 0 0 149 -5,-0.2 4,-1.1 1,-0.2 -2,-0.2 0.969 110.9 38.4 -64.2 -56.3 7.1 -8.2 -7.4 48 48 A E H < S+ 0 0 58 -4,-3.7 -2,-0.2 2,-0.2 -1,-0.2 0.800 107.4 70.6 -64.5 -29.8 7.4 -5.7 -4.5 49 49 A c H >X S+ 0 0 0 -4,-2.5 3,-3.5 -5,-0.3 4,-2.1 0.970 104.0 37.1 -49.1 -68.4 3.8 -5.0 -4.9 50 50 A D H 3< S+ 0 0 95 -4,-1.7 4,-0.5 1,-0.3 -1,-0.3 0.763 114.2 60.0 -55.9 -25.1 2.7 -8.3 -3.6 51 51 A H T 3< S+ 0 0 104 -4,-1.1 -1,-0.3 -5,-0.2 -2,-0.2 0.371 109.8 43.5 -83.8 4.0 5.6 -7.9 -1.2 52 52 A Y T X> S+ 0 0 12 -3,-3.5 4,-2.5 3,-0.1 3,-1.0 0.734 100.1 61.7-112.8 -45.5 3.9 -4.8 -0.0 53 53 A V T 3< S+ 0 0 4 -4,-2.1 -2,-0.1 1,-0.3 -3,-0.1 0.689 118.0 37.6 -57.1 -17.3 0.2 -5.8 0.4 54 54 A N T 34 S+ 0 0 90 -4,-0.5 -1,-0.3 -5,-0.3 -4,-0.0 -0.569 125.4 30.2-136.0 69.3 1.6 -8.2 2.9 55 55 A S T <4 S+ 0 0 63 -3,-1.0 -2,-0.2 -2,-0.1 -3,-0.1 0.080 129.1 29.2 172.6 -34.5 4.5 -6.4 4.7 56 56 A K S X S+ 0 0 94 -4,-2.5 4,-0.8 3,-0.1 -3,-0.1 0.161 110.6 68.1-128.5 11.7 3.6 -2.8 4.7 57 57 A V H > S+ 0 0 2 -5,-0.5 4,-3.4 3,-0.2 5,-0.4 0.825 92.0 55.6 -97.5 -45.1 -0.2 -3.2 4.7 58 58 A D H 4 S+ 0 0 116 2,-0.2 4,-0.3 1,-0.2 -2,-0.1 0.898 119.9 35.1 -53.9 -43.9 -0.7 -4.7 8.1 59 59 A P H >> S+ 0 0 38 0, 0.0 4,-1.8 0, 0.0 3,-0.9 0.961 117.6 50.1 -74.9 -55.9 1.1 -1.7 9.6 60 60 A I H >X S+ 0 0 0 -4,-0.8 4,-1.6 1,-0.3 3,-0.7 0.927 114.8 44.7 -46.6 -55.2 -0.1 1.0 7.1 61 61 A I H 3X S+ 0 0 4 -4,-3.4 4,-0.7 1,-0.3 -1,-0.3 0.727 105.6 66.6 -62.4 -21.3 -3.7 -0.2 7.7 62 62 A H H <> S+ 0 0 75 -3,-0.9 4,-1.0 -5,-0.4 -1,-0.3 0.914 100.6 47.0 -65.3 -44.7 -2.7 -0.2 11.4 63 63 A E H XX>S+ 0 0 31 -4,-1.8 4,-2.4 -3,-0.7 3,-1.9 0.979 114.3 43.9 -60.2 -60.6 -2.3 3.5 11.4 64 64 A L H 3<5S+ 0 0 27 -4,-1.6 -1,-0.2 1,-0.3 -2,-0.2 0.684 108.0 65.4 -58.6 -16.9 -5.6 4.3 9.6 65 65 A E H 3<5S+ 0 0 134 -4,-0.7 -1,-0.3 -5,-0.3 -2,-0.2 0.808 107.7 37.2 -74.8 -31.7 -6.9 1.6 12.0 66 66 A G H <<5S- 0 0 78 -3,-1.9 -2,-0.2 -4,-1.0 -1,-0.2 0.820 135.7 -79.3 -87.4 -36.5 -6.2 3.8 15.0 67 67 A G T <5S+ 0 0 68 -4,-2.4 2,-0.3 -5,-0.1 -3,-0.2 0.521 78.6 144.0 136.8 43.1 -7.2 7.1 13.3 68 68 A T < - 0 0 50 -5,-1.1 -1,-0.1 -6,-0.1 5,-0.0 -0.804 45.2-119.0-108.4 149.5 -4.3 8.2 11.1 69 69 A A >> - 0 0 39 -2,-0.3 4,-1.4 1,-0.1 3,-1.3 -0.387 23.2-116.4 -81.5 162.3 -4.5 9.9 7.8 70 70 A P H 3> S+ 0 0 27 0, 0.0 4,-0.5 0, 0.0 -56,-0.1 0.517 119.5 52.0 -75.0 -5.4 -3.0 8.4 4.5 71 71 A K H 34 S+ 0 0 150 2,-0.1 -61,-0.0 1,-0.1 -2,-0.0 0.332 107.9 51.0-108.7 1.2 -0.7 11.4 4.5 72 72 A D H <> S+ 0 0 71 -3,-1.3 4,-1.7 3,-0.1 5,-0.3 0.629 103.5 57.2-108.1 -25.2 0.5 10.8 8.1 73 73 A V H X S+ 0 0 0 -4,-1.4 2,-3.4 1,-0.2 4,-2.2 0.964 95.3 63.6 -70.1 -55.0 1.3 7.1 7.7 74 74 A b H < S+ 0 0 9 -4,-0.5 -1,-0.2 1,-0.2 -68,-0.0 -0.375 114.9 31.8 -70.8 67.5 3.8 7.6 4.8 75 75 A T H >4 S+ 0 0 75 -2,-3.4 3,-1.0 -3,-0.2 -1,-0.2 -0.080 118.1 42.2-178.8 -64.1 6.0 9.6 7.2 76 76 A K H 3< S+ 0 0 148 -4,-1.7 -2,-0.1 1,-0.3 -3,-0.1 0.754 109.9 61.7 -74.7 -25.6 5.9 8.5 10.8 77 77 A L T 3< S- 0 0 41 -4,-2.2 -1,-0.3 -5,-0.3 -3,-0.1 0.285 104.3-133.9 -82.4 10.5 5.9 4.9 9.6 78 78 A N S < S+ 0 0 126 -3,-1.0 -2,-0.1 1,-0.1 -4,-0.1 0.792 78.4 114.8 39.0 33.1 9.3 5.7 8.1 79 79 A E + 0 0 11 -6,-0.5 -77,-0.2 2,-0.1 -1,-0.1 0.816 59.3 61.1 -95.7 -41.2 7.8 3.9 5.1 80 80 A a 0 0 32 1,-0.3 -77,-0.6 -7,-0.3 -78,-0.6 0.921 360.0 360.0 -50.6 -48.9 7.7 6.8 2.7 81 81 A P 0 0 69 0, 0.0 -1,-0.3 0, 0.0 -2,-0.1 0.058 360.0 360.0 -75.1 360.0 11.5 7.0 3.0