==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 10-JUL-07 2JSN . COMPND 2 MOLECULE: TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 4; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.FENG,S.FAN,W.GONG,B.XIA . 96 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7022.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 47.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 26 27.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 7.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 3 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 214 0, 0.0 2,-2.2 0, 0.0 3,-0.2 0.000 360.0 360.0 360.0 147.8 1.7 36.4 9.7 2 2 A G - 0 0 47 1,-0.2 0, 0.0 0, 0.0 0, 0.0 -0.418 360.0-162.9 80.2 -61.4 0.2 33.7 12.0 3 3 A H - 0 0 168 -2,-2.2 -1,-0.2 1,-0.1 0, 0.0 0.825 23.7-178.1 47.1 38.8 0.6 30.8 9.6 4 4 A H - 0 0 175 -3,-0.2 2,-0.3 1,-0.0 -1,-0.1 -0.242 8.5-179.9 -64.1 155.5 -1.8 28.8 11.7 5 5 A H - 0 0 168 2,-0.0 2,-0.3 0, 0.0 -1,-0.0 -0.963 9.7-172.7-152.7 159.5 -2.7 25.2 10.8 6 6 A H + 0 0 168 -2,-0.3 2,-0.3 0, 0.0 -2,-0.0 -0.966 5.6 178.2-152.9 155.4 -5.0 22.4 12.2 7 7 A H - 0 0 125 -2,-0.3 3,-0.1 1,-0.0 -2,-0.0 -0.961 32.5 -92.3-153.4 163.8 -5.5 18.6 11.4 8 8 A H S S- 0 0 130 -2,-0.3 -1,-0.0 1,-0.2 0, 0.0 -0.130 76.0 -47.4 -66.2 172.7 -7.5 15.6 12.6 9 9 A L > - 0 0 107 1,-0.1 3,-2.1 2,-0.1 -1,-0.2 -0.255 54.8-133.2 -46.5 122.4 -6.2 13.0 15.2 10 10 A D T 3 S+ 0 0 98 1,-0.3 -1,-0.1 -3,-0.1 -2,-0.1 0.766 102.6 62.6 -55.3 -32.8 -2.6 12.2 14.1 11 11 A S T 3 S+ 0 0 43 83,-0.0 -1,-0.3 82,-0.0 2,-0.1 0.677 97.6 79.6 -64.4 -22.6 -3.2 8.4 14.5 12 12 A Y < + 0 0 143 -3,-2.1 82,-0.2 82,-0.1 81,-0.1 -0.449 43.1 162.1 -96.1 164.1 -6.0 8.5 11.8 13 13 A A - 0 0 16 80,-0.5 3,-0.1 -2,-0.1 79,-0.1 -0.911 52.4 -68.7-162.5 159.2 -6.4 8.5 8.0 14 14 A P - 0 0 87 0, 0.0 76,-0.4 0, 0.0 0, 0.0 -0.134 68.6 -81.8 -49.2 150.7 -9.4 7.7 5.7 15 15 A R - 0 0 182 1,-0.1 75,-0.4 74,-0.1 2,-0.0 0.011 48.3 -95.5 -55.0 158.5 -10.5 4.0 5.5 16 16 A A - 0 0 27 73,-0.2 73,-0.2 1,-0.1 2,-0.1 -0.290 39.4-114.5 -65.2 158.1 -8.9 1.2 3.4 17 17 A E - 0 0 57 71,-2.4 71,-0.2 1,-0.2 -1,-0.1 -0.430 41.6 -82.2 -86.4 167.8 -10.3 0.4 -0.0 18 18 A A - 0 0 74 1,-0.1 70,-0.3 -2,-0.1 -1,-0.2 -0.213 56.2 -82.9 -63.4 160.4 -11.9 -3.0 -0.9 19 19 A E - 0 0 94 68,-0.1 2,-0.3 66,-0.1 68,-0.2 -0.389 52.3-172.8 -61.3 142.3 -9.8 -6.1 -1.8 20 20 A K E -A 86 0A 99 66,-2.3 66,-2.8 -3,-0.1 2,-0.2 -0.994 23.2-115.3-142.4 142.2 -8.8 -6.1 -5.5 21 21 A T E -A 85 0A 102 -2,-0.3 2,-0.3 64,-0.3 64,-0.3 -0.492 34.0-177.8 -72.1 145.4 -7.1 -8.8 -7.7 22 22 A F E +A 84 0A 19 62,-2.8 62,-2.4 -2,-0.2 2,-0.3 -0.953 10.0 166.6-139.9 159.1 -3.6 -8.0 -9.2 23 23 A S - 0 0 62 -2,-0.3 59,-0.0 60,-0.2 53,-0.0 -0.911 31.5 -72.5-158.9 174.9 -1.2 -9.8 -11.6 24 24 A Y S S+ 0 0 43 -2,-0.3 2,-0.2 55,-0.1 58,-0.1 -0.923 92.8 39.3-141.5 159.6 2.0 -8.8 -13.5 25 25 A P S S+ 0 0 129 0, 0.0 2,-0.3 0, 0.0 -1,-0.0 0.645 85.2 142.7 -64.4 154.3 3.4 -7.4 -15.8 26 26 A L - 0 0 93 2,-0.3 2,-2.1 -2,-0.2 -2,-0.0 -0.969 68.0 -96.7-157.4 155.9 0.9 -4.4 -15.3 27 27 A D S S+ 0 0 115 -2,-0.3 2,-0.3 15,-0.1 -3,-0.0 -0.449 96.6 94.9 -76.0 58.9 0.9 -0.6 -15.5 28 28 A L - 0 0 28 -2,-2.1 2,-0.3 2,-0.0 -2,-0.3 -0.942 50.5-178.7-153.2 133.6 1.4 -0.6 -11.6 29 29 A L E -B 41 0A 108 12,-2.6 11,-2.4 -2,-0.3 12,-1.6 -0.988 7.7-159.4-139.3 145.4 4.7 -0.4 -9.6 30 30 A L E -B 39 0A 29 -2,-0.3 2,-0.3 9,-0.3 9,-0.2 -0.870 7.5-173.8-125.2 155.6 5.3 -0.4 -5.9 31 31 A K E -B 38 0A 66 7,-2.7 7,-2.8 -2,-0.3 2,-0.5 -0.923 27.8-107.2-143.0 164.6 8.3 0.8 -3.7 32 32 A L E +B 37 0A 56 -2,-0.3 2,-0.3 5,-0.2 5,-0.2 -0.874 42.2 158.6 -98.2 127.5 9.5 0.7 -0.1 33 33 A H E > -B 36 0A 110 3,-2.6 3,-1.8 -2,-0.5 -2,-0.1 -0.972 67.1 -8.8-144.3 138.2 9.3 3.9 2.0 34 34 A D T 3 S- 0 0 158 -2,-0.3 3,-0.1 1,-0.3 -1,-0.0 0.849 126.9 -55.2 44.8 48.4 9.2 4.4 5.8 35 35 A E T 3 S+ 0 0 93 1,-0.2 2,-0.3 29,-0.1 -1,-0.3 0.755 120.8 100.2 56.9 30.5 8.8 0.6 6.4 36 36 A R E < S-B 33 0A 98 -3,-1.8 -3,-2.6 28,-0.1 2,-0.6 -0.985 74.1-124.1-134.8 148.9 5.6 0.4 4.2 37 37 A V E -B 32 0A 1 26,-1.0 16,-2.5 -2,-0.3 2,-0.3 -0.868 39.5-176.7 -92.3 125.7 5.2 -0.7 0.6 38 38 A L E -BC 31 52A 25 -7,-2.8 -7,-2.7 -2,-0.6 2,-0.4 -0.861 35.2 -92.4-123.6 153.0 3.6 2.2 -1.4 39 39 A V E -B 30 0A 6 12,-2.7 11,-2.2 9,-0.3 -9,-0.3 -0.549 36.0-178.3 -65.7 121.0 2.3 2.7 -4.9 40 40 A A E - 0 0 34 -11,-2.4 2,-0.3 1,-0.4 -10,-0.2 0.790 67.5 -13.8 -89.3 -38.0 5.3 4.2 -7.0 41 41 A F E S+B 29 0A 106 -12,-1.6 -12,-2.6 7,-0.1 -1,-0.4 -0.962 84.8 97.5-160.8 157.0 3.3 4.5 -10.3 42 42 A G + 0 0 19 -2,-0.3 -15,-0.1 -14,-0.3 4,-0.1 0.263 47.9 144.0 138.6 -3.3 0.0 3.3 -11.9 43 43 A Q - 0 0 41 1,-0.1 -1,-0.2 3,-0.1 -3,-0.0 -0.288 49.3-143.4 -57.9 141.8 -2.2 6.4 -11.3 44 44 A R S S- 0 0 226 -2,-0.0 -1,-0.1 0, 0.0 0, 0.0 0.783 95.5 -25.2 -72.5 -30.0 -4.8 7.3 -13.9 45 45 A D S S- 0 0 147 0, 0.0 -2,-0.1 0, 0.0 -3,-0.0 0.380 117.5 -54.5-152.3 -38.8 -4.1 11.0 -13.0 46 46 A G S > S+ 0 0 31 -4,-0.1 2,-1.8 3,-0.0 3,-0.6 0.236 101.4 101.3-179.4 -31.5 -2.7 11.2 -9.4 47 47 A I T 3 S+ 0 0 135 1,-0.2 3,-0.0 3,-0.1 0, 0.0 -0.003 85.3 50.1 -70.3 32.0 -5.1 9.5 -6.9 48 48 A R T > S+ 0 0 56 -2,-1.8 3,-1.8 -9,-0.0 -9,-0.3 0.574 80.0 91.7-136.8 -42.2 -3.0 6.3 -6.6 49 49 A V T < S+ 0 0 61 -3,-0.6 -9,-0.2 1,-0.2 3,-0.1 -0.264 91.6 28.6 -58.3 143.6 0.6 7.1 -5.9 50 50 A G T 3 S+ 0 0 35 -11,-2.2 -1,-0.2 1,-0.3 2,-0.1 0.256 87.1 129.7 84.9 -11.1 1.4 7.2 -2.2 51 51 A H < - 0 0 21 -3,-1.8 -12,-2.7 39,-0.1 2,-0.3 -0.432 50.9-136.5 -67.0 155.6 -1.3 4.7 -1.3 52 52 A A E -CD 38 89A 2 37,-3.0 37,-2.2 -14,-0.2 -14,-0.2 -0.907 8.7-113.2-125.7 140.6 0.0 1.9 0.9 53 53 A V E + D 0 88A 6 -16,-2.5 35,-0.3 -2,-0.3 -16,-0.2 -0.426 30.8 173.2 -66.1 146.2 -0.5 -1.9 1.0 54 54 A L E - 0 0 39 33,-2.9 7,-1.9 1,-0.5 2,-0.3 0.596 63.9 -1.0-130.1 -35.2 -2.4 -3.2 4.0 55 55 A A E -ED 60 87A 7 32,-2.3 32,-2.7 5,-0.3 -1,-0.5 -0.985 51.5-154.2-152.1 160.0 -2.8 -7.0 3.2 56 56 A I E > S-ED 59 86A 0 3,-2.1 3,-2.5 -2,-0.3 30,-0.2 -0.997 85.3 -15.9-135.0 131.8 -2.1 -9.6 0.5 57 57 A N T 3 S- 0 0 76 28,-3.0 29,-0.1 -2,-0.4 3,-0.1 0.611 130.9 -53.0 42.9 24.2 -4.3 -12.7 0.1 58 58 A G T 3 S+ 0 0 42 1,-0.3 2,-0.9 27,-0.2 -1,-0.3 0.144 109.4 124.6 101.2 -14.3 -5.6 -12.0 3.7 59 59 A M E < -E 56 0A 61 -3,-2.5 -3,-2.1 1,-0.0 -1,-0.3 -0.701 62.1-136.1 -74.7 105.9 -2.2 -11.7 5.3 60 60 A D E -E 55 0A 112 -2,-0.9 2,-0.3 -5,-0.3 -5,-0.3 -0.506 31.1-116.2 -57.3 122.4 -2.1 -8.3 7.0 61 61 A V - 0 0 12 -7,-1.9 2,-2.0 -2,-0.2 5,-0.3 -0.553 6.4-132.8 -77.7 132.2 1.3 -7.0 6.1 62 62 A N B > S-F 65 0B 118 3,-2.0 2,-2.2 -2,-0.3 3,-1.6 -0.628 70.9 -73.8 -74.8 73.5 3.9 -6.4 8.8 63 63 A G T 3 S- 0 0 10 -2,-2.0 -26,-1.0 1,-0.3 -10,-0.1 -0.393 121.1 -4.7 69.0 -72.3 4.7 -3.0 7.2 64 64 A R T 3 S+ 0 0 47 -2,-2.2 8,-2.7 -28,-0.2 9,-0.4 0.177 127.0 72.8-133.7 11.0 6.7 -4.4 4.3 65 65 A Y B < S-FG 62 71B 77 -3,-1.6 -3,-2.0 6,-0.3 6,-0.2 -0.888 81.4-112.8-120.8 154.9 6.7 -8.1 5.2 66 66 A T - 0 0 2 4,-2.5 -5,-0.1 -2,-0.3 -2,-0.1 -0.218 38.1 -98.5 -69.6 175.4 3.8 -10.6 5.0 67 67 A A S S+ 0 0 70 1,-0.2 -1,-0.1 2,-0.1 -6,-0.1 0.867 132.0 49.5 -58.8 -37.9 2.3 -12.2 8.1 68 68 A D S S- 0 0 113 2,-0.1 -1,-0.2 -9,-0.0 -7,-0.0 0.863 124.9-108.4 -70.4 -37.3 4.6 -15.2 7.3 69 69 A G + 0 0 41 1,-0.3 2,-0.2 0, 0.0 -2,-0.1 0.431 67.5 142.8 123.0 6.2 7.6 -12.8 6.9 70 70 A K - 0 0 113 1,-0.1 -4,-2.5 -5,-0.1 -1,-0.3 -0.548 62.6-107.4 -66.7 136.0 8.3 -12.7 3.1 71 71 A E B > -G 65 0B 47 -6,-0.2 4,-2.9 -2,-0.2 3,-0.5 -0.574 29.0-132.1 -66.4 128.1 9.4 -9.2 2.1 72 72 A V H > S+ 0 0 0 -8,-2.7 4,-2.7 -2,-0.3 5,-0.3 0.828 102.4 53.9 -56.4 -40.0 6.3 -7.9 0.1 73 73 A L H > S+ 0 0 60 -9,-0.4 4,-1.8 2,-0.2 -1,-0.2 0.913 115.6 39.3 -65.5 -40.5 8.3 -6.7 -2.9 74 74 A E H > S+ 0 0 142 -3,-0.5 4,-2.1 2,-0.2 -2,-0.2 0.897 114.2 55.4 -72.6 -39.2 10.0 -10.1 -3.4 75 75 A Y H < S+ 0 0 45 -4,-2.9 -2,-0.2 1,-0.2 -3,-0.2 0.910 116.4 36.0 -59.6 -46.5 6.8 -11.9 -2.5 76 76 A L H < S+ 0 0 7 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.819 114.2 58.4 -75.6 -33.9 4.9 -10.0 -5.3 77 77 A G H < S+ 0 0 44 -4,-1.8 -2,-0.2 -5,-0.3 -1,-0.2 0.796 83.0 94.2 -67.6 -30.8 8.0 -10.1 -7.6 78 78 A N S >< S- 0 0 82 -4,-2.1 3,-2.1 1,-0.2 -4,-0.0 -0.519 70.8-149.9 -62.3 115.3 8.1 -13.9 -7.5 79 79 A P G > S+ 0 0 86 0, 0.0 3,-1.4 0, 0.0 -1,-0.2 0.723 94.1 69.9 -70.5 -16.1 6.1 -15.0 -10.6 80 80 A A G 3 S+ 0 0 90 1,-0.3 -2,-0.1 2,-0.1 -4,-0.1 0.656 112.7 33.8 -63.4 -14.9 5.0 -18.3 -8.9 81 81 A N G < S+ 0 0 32 -3,-2.1 -1,-0.3 -6,-0.1 -3,-0.1 -0.164 82.4 117.6-134.6 28.9 3.0 -15.7 -6.8 82 82 A Y < + 0 0 79 -3,-1.4 2,-0.4 -5,-0.1 -2,-0.1 0.958 63.1 70.8 -60.8 -54.4 2.2 -13.1 -9.5 83 83 A P S S+ 0 0 92 0, 0.0 2,-0.3 0, 0.0 -60,-0.2 -0.577 72.6 138.9 -72.6 122.2 -1.7 -13.7 -9.3 84 84 A V E -A 22 0A 12 -62,-2.4 -62,-2.8 -2,-0.4 2,-0.4 -0.896 50.3-124.4-149.7 172.0 -2.8 -12.2 -5.9 85 85 A S E -A 21 0A 32 -64,-0.3 -28,-3.0 -2,-0.3 2,-0.3 -0.975 31.7-167.8-125.8 139.9 -5.5 -10.2 -4.2 86 86 A I E -AD 20 56A 5 -66,-2.8 -66,-2.3 -2,-0.4 2,-0.4 -0.946 18.4-152.5-133.4 147.7 -4.4 -7.1 -2.2 87 87 A R E + D 0 55A 108 -32,-2.7 -33,-2.9 -2,-0.3 -32,-2.3 -0.986 32.5 159.3-119.5 130.6 -6.0 -4.7 0.3 88 88 A F E + D 0 53A 15 -2,-0.4 -71,-2.4 -70,-0.3 2,-0.3 -0.914 4.2 139.6-152.7 164.8 -4.5 -1.2 0.2 89 89 A G E - D 0 52A 0 -37,-2.2 -37,-3.0 -2,-0.3 -73,-0.2 -0.926 56.0 -21.6 179.3-165.2 -5.5 2.4 1.2 90 90 A R - 0 0 60 -75,-0.4 3,-0.4 -76,-0.4 -39,-0.1 -0.497 68.9-111.9 -65.1 142.2 -4.2 5.6 2.8 91 91 A P S S+ 0 0 60 0, 0.0 -1,-0.1 0, 0.0 -37,-0.0 -0.252 99.1 38.6 -65.4 167.3 -1.1 5.2 4.9 92 92 A R + 0 0 101 2,-0.2 3,-0.2 1,-0.1 -2,-0.1 0.851 62.6 155.9 51.9 40.2 -1.4 5.7 8.7 93 93 A L S S- 0 0 56 -3,-0.4 -80,-0.5 1,-0.3 2,-0.3 0.878 84.4 -11.2 -54.2 -37.5 -4.8 4.0 8.8 94 94 A T S S- 0 0 90 -82,-0.2 -1,-0.3 -84,-0.0 -2,-0.2 -0.934 76.6-110.8-153.5 155.7 -3.8 3.5 12.5 95 95 A S 0 0 61 -2,-0.3 -83,-0.1 -3,-0.2 -2,-0.1 0.688 360.0 360.0 -63.9 -19.1 -0.3 4.0 14.1 96 96 A N 0 0 193 -85,-0.1 -1,-0.2 -4,-0.0 -85,-0.0 -0.973 360.0 360.0-148.2 360.0 -0.0 0.2 14.6