==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=5-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION 20-AUG-01 1JT8 . COMPND 2 MOLECULE: PROBABLE TRANSLATION INITIATION FACTOR 1A; . SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; . AUTHOR D.W.HOFFMAN,W.LI . 102 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8767.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 53.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 4.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 26 25.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 15.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 250 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 35.9 -14.2 -6.2 -21.5 2 2 A A + 0 0 53 5,-0.0 2,-0.2 2,-0.0 5,-0.0 -0.799 360.0 164.8-165.7 118.8 -17.0 -4.2 -19.7 3 3 A E + 0 0 170 -2,-0.2 2,-0.3 2,-0.0 4,-0.0 -0.626 32.0 126.8-139.0 78.6 -18.3 -0.7 -20.3 4 4 A Q - 0 0 147 -2,-0.2 3,-0.2 1,-0.0 -2,-0.0 -0.893 63.4 -86.6-130.8 162.5 -21.7 -0.1 -18.6 5 5 A Q S S+ 0 0 168 -2,-0.3 -2,-0.0 1,-0.2 -1,-0.0 -0.351 109.5 23.2 -67.0 147.8 -23.1 2.5 -16.1 6 6 A Q S S+ 0 0 203 1,-0.2 2,-0.4 -2,-0.0 -1,-0.2 0.996 86.8 156.9 59.7 65.3 -22.5 1.8 -12.4 7 7 A E - 0 0 63 -3,-0.2 2,-0.8 -5,-0.0 -1,-0.2 -0.973 44.2-128.2-125.1 136.4 -19.4 -0.5 -12.9 8 8 A Q - 0 0 184 -2,-0.4 2,-0.2 2,-0.0 3,-0.0 -0.707 29.1-158.0 -84.2 111.9 -16.6 -1.2 -10.3 9 9 A Q - 0 0 136 -2,-0.8 -2,-0.0 1,-0.1 -1,-0.0 -0.607 21.4-129.8 -89.8 151.1 -13.3 -0.5 -12.0 10 10 A I - 0 0 94 -2,-0.2 78,-0.4 77,-0.1 -1,-0.1 0.860 24.7-158.4 -67.4 -33.8 -10.0 -2.1 -10.8 11 11 A R + 0 0 154 1,-0.1 -1,-0.1 76,-0.1 76,-0.1 0.717 43.8 138.7 62.4 17.7 -8.3 1.4 -10.8 12 12 A V + 0 0 28 1,-0.1 -1,-0.1 2,-0.0 76,-0.1 -0.201 30.9 64.8 -83.5-179.5 -4.9 -0.5 -11.0 13 13 A R - 0 0 229 1,-0.1 -1,-0.1 75,-0.1 -2,-0.1 0.998 68.5-167.0 67.5 67.6 -1.9 0.5 -13.2 14 14 A I - 0 0 89 1,-0.1 -1,-0.1 74,-0.0 -2,-0.0 -0.740 11.0-134.2 -91.6 136.0 -1.0 3.8 -11.5 15 15 A P S S+ 0 0 90 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.093 70.6 61.7 -76.4 178.7 1.4 6.1 -13.3 16 16 A R + 0 0 237 1,-0.1 -2,-0.0 2,-0.0 0, 0.0 0.892 51.8 147.9 65.4 101.1 4.4 8.0 -11.7 17 17 A K + 0 0 128 1,-0.0 -1,-0.1 3,-0.0 4,-0.1 -0.361 5.0 155.3-164.0 72.8 6.9 5.4 -10.3 18 18 A E S S+ 0 0 208 1,-0.2 3,-0.1 2,-0.1 -2,-0.0 0.966 93.1 11.6 -69.8 -51.8 10.6 6.5 -10.4 19 19 A E S S- 0 0 160 1,-0.3 -1,-0.2 0, 0.0 -2,-0.0 0.049 112.2-115.5-114.0 25.4 11.8 4.3 -7.5 20 20 A N - 0 0 106 2,-0.0 -1,-0.3 48,-0.0 2,-0.2 0.074 32.6 -99.5 64.1 175.1 8.6 2.1 -7.3 21 21 A E - 0 0 47 47,-0.1 2,-0.2 -4,-0.1 47,-0.2 -0.772 22.7-119.7-126.2 172.9 6.4 2.2 -4.1 22 22 A I E -A 67 0A 14 45,-1.6 45,-1.8 -2,-0.2 2,-0.5 -0.729 18.9-138.6-109.9 161.5 5.9 -0.1 -1.1 23 23 A L E +AB 66 40A 24 17,-1.2 17,-2.6 -2,-0.2 2,-0.3 -0.960 31.9 157.4-125.1 120.7 2.6 -1.9 -0.0 24 24 A G E -AB 65 39A 1 41,-1.5 41,-2.0 -2,-0.5 2,-0.4 -0.956 38.3-118.7-141.2 162.1 1.5 -2.0 3.6 25 25 A I E -AB 64 38A 62 13,-1.7 13,-1.6 -2,-0.3 2,-0.3 -0.778 31.1-137.4 -98.1 139.9 -1.6 -2.5 5.8 26 26 A I E -AB 63 37A 2 37,-1.6 37,-1.8 -2,-0.4 36,-0.7 -0.703 18.6-174.8 -99.5 151.6 -2.6 0.4 8.2 27 27 A E E + B 0 36A 54 9,-1.6 9,-1.7 -2,-0.3 2,-0.2 -0.998 22.8 123.8-143.8 138.4 -3.7 0.1 11.8 28 28 A Q + 0 0 26 32,-0.4 -2,-0.0 -2,-0.3 7,-0.0 -0.541 19.0 175.2 167.5 123.6 -5.0 2.8 14.3 29 29 A M S S+ 0 0 97 -2,-0.2 32,-0.1 32,-0.0 -1,-0.0 0.688 78.3 68.5-109.7 -29.7 -8.2 3.2 16.4 30 30 A L S S- 0 0 161 2,-0.0 5,-0.1 30,-0.0 -2,-0.1 0.973 87.3-147.4 -55.8 -56.5 -7.4 6.4 18.3 31 31 A G + 0 0 53 3,-0.3 4,-0.1 1,-0.1 -3,-0.0 0.935 35.5 159.3 85.7 75.8 -7.5 8.7 15.2 32 32 A A S S- 0 0 58 2,-0.7 3,-0.1 0, 0.0 -1,-0.1 -0.143 72.4 -89.7-120.0 37.5 -4.9 11.5 15.6 33 33 A S S S+ 0 0 70 1,-0.1 16,-0.7 21,-0.1 2,-0.3 0.511 110.0 76.2 69.6 1.3 -4.5 12.4 11.9 34 34 A R E - C 0 48A 149 14,-0.1 -2,-0.7 20,-0.0 2,-0.3 -0.972 58.2-172.5-140.9 155.3 -1.7 9.8 11.7 35 35 A V E - C 0 47A 19 12,-2.0 12,-1.3 -2,-0.3 2,-0.5 -0.906 24.1-114.6-141.2 169.6 -1.5 6.0 11.5 36 36 A R E -BC 27 46A 157 -9,-1.7 -9,-1.6 -2,-0.3 2,-0.4 -0.927 30.4-170.9-113.4 128.0 1.1 3.2 11.6 37 37 A V E -BC 26 45A 6 8,-2.1 8,-1.5 -2,-0.5 2,-0.4 -0.916 14.5-162.6-120.7 148.6 1.8 0.9 8.6 38 38 A R E -BC 25 44A 116 -13,-1.6 -13,-1.7 -2,-0.4 2,-0.3 -0.954 26.1-174.1-120.7 135.1 3.8 -2.3 8.1 39 39 A C E > -BC 24 43A 19 4,-2.0 4,-1.4 -2,-0.4 -15,-0.3 -0.964 25.4-132.0-140.2 160.4 4.7 -3.1 4.5 40 40 A L E 4 S+B 23 0A 102 -17,-2.6 -17,-1.2 -2,-0.3 53,-0.0 -0.270 82.8 73.1 -93.6 179.5 6.2 -5.6 2.1 41 41 A D T 4 S- 0 0 89 -19,-0.2 -1,-0.2 1,-0.1 -17,-0.0 0.701 132.7 -67.6 75.3 22.7 8.7 -4.7 -0.6 42 42 A G T 4 S+ 0 0 58 1,-0.2 2,-0.3 -3,-0.1 -2,-0.2 0.952 99.5 126.6 66.7 56.0 11.0 -4.3 2.5 43 43 A K E < -C 39 0A 61 -4,-1.4 -4,-2.0 -20,-0.1 2,-0.4 -0.993 37.7-175.6-145.8 154.5 9.5 -1.3 4.4 44 44 A T E +C 38 0A 98 -2,-0.3 32,-1.8 -6,-0.2 2,-0.3 -0.976 31.2 152.5-141.6 117.8 8.1 -0.1 7.7 45 45 A R E -Cd 37 76A 9 -8,-1.5 -8,-2.1 -2,-0.4 2,-0.5 -0.978 47.9-112.9-146.8 164.9 6.7 3.4 7.9 46 46 A L E -Cd 36 77A 58 30,-1.4 32,-2.3 -2,-0.3 2,-0.3 -0.847 40.9-141.8 -97.5 125.1 4.2 5.8 9.6 47 47 A G E -Cd 35 78A 1 -12,-1.3 -12,-2.0 -2,-0.5 2,-0.3 -0.724 14.2-163.6 -95.9 142.9 1.5 6.7 7.1 48 48 A R E -Cd 34 79A 98 30,-1.9 32,-1.8 -2,-0.3 -14,-0.1 -0.905 2.0-158.6-121.4 149.5 -0.1 10.2 6.8 49 49 A I - 0 0 19 -16,-0.7 32,-0.1 -2,-0.3 30,-0.0 -0.904 22.4-106.9-126.9 156.5 -3.3 11.2 5.0 50 50 A P > - 0 0 56 0, 0.0 4,-2.9 0, 0.0 5,-0.2 -0.199 38.7-100.2 -74.4 167.9 -4.6 14.6 3.7 51 51 A G H > S+ 0 0 64 2,-0.2 4,-1.6 1,-0.2 5,-0.2 0.926 122.7 51.0 -57.5 -45.5 -7.4 16.6 5.4 52 52 A R H 4 S+ 0 0 165 1,-0.2 4,-0.3 2,-0.2 3,-0.3 0.973 117.1 38.1 -58.2 -55.1 -10.0 15.4 2.9 53 53 A L H >> S+ 0 0 45 1,-0.2 4,-2.8 2,-0.2 3,-1.2 0.857 106.8 68.8 -65.6 -34.0 -9.1 11.7 3.5 54 54 A K H 3X S+ 0 0 71 -4,-2.9 4,-0.8 1,-0.3 -1,-0.2 0.930 109.8 33.3 -52.1 -48.4 -8.5 12.3 7.2 55 55 A N H 3< S+ 0 0 113 -4,-1.6 -1,-0.3 -3,-0.3 -2,-0.2 0.413 124.4 48.2 -89.1 3.6 -12.3 12.9 7.8 56 56 A R H <4 S+ 0 0 148 -3,-1.2 -2,-0.2 -4,-0.3 -1,-0.2 0.562 102.8 58.5-116.1 -15.9 -13.2 10.3 5.1 57 57 A I H < + 0 0 21 -4,-2.8 -3,-0.1 -5,-0.1 -2,-0.1 0.955 61.0 173.1 -80.9 -52.4 -11.0 7.3 6.0 58 58 A W < - 0 0 198 -4,-0.8 2,-0.2 -5,-0.3 -3,-0.1 0.926 21.7-164.6 43.8 53.6 -12.3 6.7 9.6 59 59 A V - 0 0 17 1,-0.1 -1,-0.2 -32,-0.0 -2,-0.1 -0.492 15.4-174.3 -70.7 133.8 -10.1 3.5 9.8 60 60 A R - 0 0 166 -2,-0.2 -32,-0.4 1,-0.1 2,-0.2 0.907 58.0 -48.1 -93.0 -66.9 -11.1 1.2 12.7 61 61 A E S S+ 0 0 74 1,-0.1 -34,-0.1 -34,-0.1 -1,-0.1 -0.660 112.5 29.8-174.5 113.7 -8.6 -1.7 12.7 62 62 A G + 0 0 37 -36,-0.7 2,-0.3 -2,-0.2 -35,-0.2 0.872 69.0 148.0 99.4 66.5 -7.2 -3.9 9.8 63 63 A D E -A 26 0A 18 -37,-1.8 -37,-1.6 -3,-0.1 2,-0.4 -0.880 41.8-122.4-125.9 160.5 -7.3 -1.9 6.5 64 64 A V E +AE 25 83A 23 19,-1.5 19,-1.6 -2,-0.3 2,-0.3 -0.830 32.1 176.0-105.7 142.9 -5.0 -2.1 3.4 65 65 A V E -AE 24 82A 0 -41,-2.0 -41,-1.5 -2,-0.4 2,-0.4 -0.987 29.5-127.3-142.6 155.3 -3.1 1.0 2.1 66 66 A I E -AE 23 81A 20 15,-1.2 15,-1.4 -2,-0.3 2,-0.3 -0.830 34.4-153.9 -99.9 134.5 -0.6 1.9 -0.6 67 67 A V E -AE 22 80A 0 -45,-1.8 -45,-1.6 -2,-0.4 13,-0.2 -0.869 12.7-147.6-119.2 153.4 2.5 3.8 0.8 68 68 A K - 0 0 110 11,-0.9 11,-0.4 -2,-0.3 2,-0.3 -0.827 30.3-113.1-108.3 146.9 5.0 6.3 -0.5 69 69 A P - 0 0 44 0, 0.0 2,-0.5 0, 0.0 9,-0.2 -0.627 24.7-165.0 -88.4 138.0 8.7 6.3 0.8 70 70 A W B -F 77 0A 85 7,-1.0 7,-1.3 -2,-0.3 5,-0.1 -0.970 54.4 -54.8-122.6 117.6 10.1 9.3 2.8 71 71 A E - 0 0 141 -2,-0.5 -1,-0.1 5,-0.2 5,-0.1 -0.114 65.2-117.9 47.9-147.8 13.9 9.6 3.3 72 72 A V > + 0 0 92 3,-0.1 3,-1.5 -3,-0.1 -2,-0.1 0.151 54.6 133.1-148.5 -86.7 15.4 6.4 4.8 73 73 A Q T 3 S- 0 0 127 1,-0.2 3,-0.1 3,-0.1 -2,-0.0 -0.062 91.7 -47.4 52.2-158.7 17.2 6.3 8.2 74 74 A G T 3 S+ 0 0 77 1,-0.1 2,-0.2 2,-0.0 -1,-0.2 0.087 135.0 30.0 -92.5 25.7 16.2 3.4 10.5 75 75 A D S < S- 0 0 100 -3,-1.5 2,-0.3 -5,-0.1 -30,-0.2 -0.841 76.1-141.1-176.6 136.6 12.5 4.2 9.8 76 76 A Q E -d 45 0A 15 -32,-1.8 -30,-1.4 -2,-0.2 2,-0.3 -0.817 8.7-136.4-111.3 154.2 10.7 5.7 6.8 77 77 A K E -dF 46 70A 108 -7,-1.3 -7,-1.0 -2,-0.3 2,-0.4 -0.700 28.3-166.5 -98.2 152.3 7.7 8.1 6.6 78 78 A C E -d 47 0A 1 -32,-2.3 -30,-1.9 -2,-0.3 2,-0.6 -0.996 25.9-135.5-143.9 151.7 5.0 7.3 4.0 79 79 A D E -d 48 0A 42 -11,-0.4 -11,-0.9 -2,-0.4 2,-0.3 -0.889 38.6-163.6-101.6 118.5 2.0 8.9 2.3 80 80 A I E -E 67 0A 1 -32,-1.8 2,-0.4 -2,-0.6 -13,-0.2 -0.816 22.2-152.5-113.5 155.0 -0.8 6.4 2.4 81 81 A I E -E 66 0A 73 -15,-1.4 -15,-1.2 -2,-0.3 2,-0.3 -0.959 23.6-140.5-116.6 128.6 -4.1 5.8 0.7 82 82 A W E +E 65 0A 65 -2,-0.4 2,-0.3 -17,-0.2 -17,-0.2 -0.741 33.6 146.6 -97.2 142.2 -6.7 3.9 2.7 83 83 A R E -E 64 0A 108 -19,-1.6 -19,-1.5 -2,-0.3 2,-0.9 -0.935 41.6-131.8-167.6 142.8 -9.1 1.3 1.2 84 84 A Y S S- 0 0 155 -2,-0.3 -21,-0.1 1,-0.3 -19,-0.1 -0.762 80.0 -39.5-105.7 91.2 -10.7 -2.0 2.4 85 85 A T S S+ 0 0 88 -2,-0.9 -1,-0.3 -21,-0.0 -22,-0.0 0.887 84.1 137.7 59.6 105.0 -10.1 -4.6 -0.3 86 86 A K - 0 0 30 -3,-0.2 -75,-0.1 -76,-0.0 -2,-0.0 0.402 67.4 -85.4-138.8 -74.7 -10.5 -3.2 -3.8 87 87 A T S > S+ 0 0 30 -76,-0.1 4,-2.3 -77,-0.0 5,-0.2 0.135 109.8 68.2-175.8 -43.8 -8.0 -4.2 -6.6 88 88 A Q H > S+ 0 0 26 -78,-0.4 4,-1.8 2,-0.2 3,-0.2 0.983 111.8 35.4 -59.4 -57.4 -4.9 -1.9 -6.4 89 89 A V H > S+ 0 0 5 1,-0.2 4,-2.7 2,-0.2 5,-0.2 0.881 114.9 58.8 -65.6 -34.3 -3.7 -3.4 -3.0 90 90 A E H > S+ 0 0 88 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.889 104.8 51.9 -61.9 -35.4 -5.0 -6.8 -4.0 91 91 A W H X S+ 0 0 139 -4,-2.3 4,-1.8 -3,-0.2 -2,-0.2 0.976 113.0 41.5 -65.4 -55.2 -2.6 -6.6 -7.1 92 92 A L H X S+ 0 0 23 -4,-1.8 4,-1.3 1,-0.2 -2,-0.2 0.895 115.6 51.8 -61.8 -38.0 0.5 -5.8 -5.0 93 93 A K H >X S+ 0 0 39 -4,-2.7 4,-1.6 2,-0.2 3,-0.6 0.946 106.8 52.3 -65.3 -44.6 -0.5 -8.4 -2.3 94 94 A R H 3X S+ 0 0 155 -4,-2.4 4,-2.0 1,-0.3 -1,-0.2 0.899 106.4 55.6 -57.6 -36.9 -1.0 -11.1 -5.0 95 95 A K H 3X S+ 0 0 120 -4,-1.8 4,-2.3 1,-0.2 -1,-0.3 0.852 101.0 58.5 -64.3 -33.3 2.6 -10.3 -6.1 96 96 A G H