==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-FEB-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 17-JUL-07 2JT1 . COMPND 2 MOLECULE: PEFI PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM LT2; . AUTHOR J.M.ARAMINI,P.ROSSI,H.WANG,C.NWOSU,K.CUNNINGHAM,L-C.MA,R.XIA . 71 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5002.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 52 73.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 11.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 7.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 43.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 209 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 144.4 -16.5 -7.6 3.6 2 2 A S + 0 0 113 2,-0.0 3,-0.3 0, 0.0 4,-0.1 0.370 360.0 95.2-155.7 -22.7 -16.6 -3.7 3.8 3 3 A E > + 0 0 78 1,-0.2 3,-1.5 2,-0.1 2,-1.3 0.852 44.9 148.4 -46.7 -45.8 -12.9 -2.6 3.4 4 4 A S T 3> + 0 0 89 1,-0.3 4,-2.2 2,-0.2 3,-0.4 -0.119 68.2 50.1 47.1 -79.7 -13.4 -2.1 -0.4 5 5 A I H 3> S+ 0 0 58 -2,-1.3 4,-2.3 -3,-0.3 -1,-0.3 0.854 108.1 55.7 -54.4 -35.8 -10.9 0.8 -0.7 6 6 A V H <> S+ 0 0 19 -3,-1.5 4,-2.5 2,-0.2 -1,-0.2 0.907 105.4 50.6 -63.7 -42.0 -8.4 -1.3 1.2 7 7 A T H > S+ 0 0 76 -3,-0.4 4,-2.5 2,-0.2 -2,-0.2 0.898 108.6 52.7 -61.1 -41.1 -8.8 -4.1 -1.4 8 8 A K H X S+ 0 0 107 -4,-2.2 4,-2.5 2,-0.2 -2,-0.2 0.928 108.2 51.3 -57.3 -46.4 -8.2 -1.4 -4.1 9 9 A I H X S+ 0 0 0 -4,-2.3 4,-2.7 2,-0.2 -2,-0.2 0.928 109.0 49.9 -56.0 -48.8 -5.0 -0.5 -2.2 10 10 A I H X S+ 0 0 55 -4,-2.5 4,-2.5 2,-0.2 -2,-0.2 0.918 110.2 50.9 -57.1 -45.2 -3.9 -4.2 -2.2 11 11 A S H X S+ 0 0 59 -4,-2.5 4,-2.9 1,-0.2 5,-0.3 0.919 110.4 49.5 -57.2 -45.9 -4.6 -4.4 -6.0 12 12 A I H X S+ 0 0 21 -4,-2.5 4,-2.6 2,-0.2 -2,-0.2 0.916 109.5 52.1 -59.4 -45.1 -2.5 -1.2 -6.5 13 13 A V H X S+ 0 0 0 -4,-2.7 4,-1.9 2,-0.2 5,-0.2 0.935 114.5 41.6 -58.0 -49.6 0.3 -2.7 -4.4 14 14 A Q H X S+ 0 0 118 -4,-2.5 4,-1.6 1,-0.2 -2,-0.2 0.965 117.3 46.1 -62.0 -52.7 0.4 -5.9 -6.5 15 15 A E H X S+ 0 0 109 -4,-2.9 4,-1.3 -5,-0.2 -2,-0.2 0.822 112.4 52.4 -65.2 -32.6 -0.0 -4.2 -9.9 16 16 A R H >X S+ 0 0 61 -4,-2.6 4,-2.6 -5,-0.3 3,-1.2 0.993 110.8 42.7 -65.7 -62.7 2.7 -1.6 -9.0 17 17 A Q H 3X S+ 0 0 33 -4,-1.9 4,-0.6 1,-0.3 -2,-0.2 0.775 110.7 61.3 -56.6 -24.3 5.5 -4.0 -8.0 18 18 A N H 3< S+ 0 0 114 -4,-1.6 -1,-0.3 -5,-0.2 -2,-0.2 0.887 111.1 37.0 -64.5 -41.0 4.3 -5.9 -11.1 19 19 A M H << S+ 0 0 115 -4,-1.3 -2,-0.2 -3,-1.2 -1,-0.2 0.753 112.9 57.4 -82.2 -28.2 5.2 -2.9 -13.2 20 20 A D H >< S- 0 0 37 -4,-2.6 2,-2.4 3,-0.2 3,-1.6 0.566 87.7-166.6 -77.7 -10.5 8.3 -2.1 -11.1 21 21 A D T 3< S+ 0 0 145 -4,-0.6 -1,-0.2 -5,-0.3 -2,-0.1 -0.301 76.9 15.3 64.1 -74.8 9.5 -5.6 -11.9 22 22 A G T 3 S+ 0 0 72 -2,-2.4 -1,-0.3 -3,-0.1 -5,-0.1 0.557 116.2 78.2-106.4 -11.8 12.3 -5.8 -9.3 23 23 A A S < S- 0 0 40 -3,-1.6 -3,-0.2 -6,-0.2 -4,-0.0 -0.792 74.0-127.4-103.3 141.4 11.4 -2.9 -7.1 24 24 A P - 0 0 19 0, 0.0 44,-0.2 0, 0.0 2,-0.2 -0.033 40.6 -76.2 -71.3-176.6 8.6 -2.8 -4.4 25 25 A V E -A 67 0A 0 42,-2.4 42,-2.4 1,-0.0 2,-0.4 -0.526 40.7-122.5 -88.8 152.1 5.8 -0.2 -4.1 26 26 A K E > -A 66 0A 65 40,-0.2 4,-2.2 -2,-0.2 5,-0.2 -0.789 10.2-134.2 -98.9 132.4 6.2 3.3 -2.8 27 27 A T H > S+ 0 0 13 38,-1.7 4,-1.2 -2,-0.4 -1,-0.1 0.887 109.8 45.3 -47.4 -47.2 4.2 4.6 0.2 28 28 A R H >> S+ 0 0 166 2,-0.2 4,-2.4 1,-0.2 3,-0.9 0.969 107.7 55.8 -59.2 -55.8 3.5 7.8 -1.7 29 29 A D H 3> S+ 0 0 40 1,-0.3 4,-2.9 2,-0.2 5,-0.3 0.835 104.2 54.4 -51.5 -39.6 2.6 6.1 -5.0 30 30 A I H 3X S+ 0 0 0 -4,-2.2 4,-2.2 1,-0.2 -1,-0.3 0.902 110.4 46.7 -59.7 -41.4 -0.1 4.1 -3.3 31 31 A A H S+ 0 0 4 -4,-1.2 5,-2.2 -3,-0.9 4,-1.7 0.877 112.5 50.7 -67.9 -39.4 -1.6 7.3 -2.0 32 32 A D H <5S+ 0 0 100 -4,-2.4 -2,-0.2 3,-0.2 -3,-0.2 0.972 114.2 41.9 -60.7 -56.6 -1.3 8.9 -5.5 33 33 A A H <5S+ 0 0 58 -4,-2.9 -2,-0.2 1,-0.2 -1,-0.2 0.909 122.0 40.7 -59.3 -45.9 -3.0 6.0 -7.3 34 34 A A H <5S- 0 0 17 -4,-2.2 -1,-0.2 -5,-0.3 -2,-0.2 0.739 107.0-127.9 -75.0 -23.6 -5.7 5.6 -4.6 35 35 A G T <5 + 0 0 61 -4,-1.7 2,-0.2 1,-0.2 -3,-0.2 0.912 64.2 123.6 74.9 44.7 -6.1 9.4 -4.2 36 36 A L < - 0 0 66 -5,-2.2 2,-0.2 -6,-0.1 -1,-0.2 -0.678 65.1 -84.1-126.9 178.7 -5.6 9.4 -0.4 37 37 A S > - 0 0 77 -2,-0.2 4,-2.5 1,-0.1 5,-0.2 -0.632 34.3-122.0 -87.0 147.9 -3.5 11.0 2.3 38 38 A I H > S+ 0 0 74 -2,-0.2 4,-2.8 1,-0.2 5,-0.2 0.883 111.2 50.2 -55.6 -44.4 -0.1 9.4 3.3 39 39 A Y H > S+ 0 0 148 2,-0.2 4,-1.7 1,-0.2 -1,-0.2 0.960 111.1 46.9 -61.5 -53.9 -1.1 9.0 6.9 40 40 A Q H > S+ 0 0 83 1,-0.2 4,-1.7 2,-0.2 -2,-0.2 0.930 115.4 47.6 -51.8 -49.1 -4.4 7.2 6.1 41 41 A V H X S+ 0 0 0 -4,-2.5 4,-2.7 1,-0.2 5,-0.2 0.943 108.6 51.5 -60.4 -51.6 -2.6 4.9 3.6 42 42 A R H X S+ 0 0 98 -4,-2.8 4,-2.5 1,-0.2 -1,-0.2 0.789 105.6 59.5 -60.8 -27.1 0.3 4.0 5.8 43 43 A L H X S+ 0 0 50 -4,-1.7 4,-2.2 -5,-0.2 -1,-0.2 0.971 109.4 40.7 -62.5 -54.6 -2.3 3.0 8.5 44 44 A Y H X S+ 0 0 57 -4,-1.7 4,-2.7 1,-0.2 5,-0.2 0.933 117.0 50.2 -57.8 -47.5 -3.9 0.4 6.2 45 45 A L H X S+ 0 0 0 -4,-2.7 4,-1.8 1,-0.2 9,-0.2 0.896 110.3 49.3 -58.7 -43.8 -0.5 -0.7 5.0 46 46 A E H X S+ 0 0 95 -4,-2.5 4,-2.6 2,-0.2 -1,-0.2 0.891 111.9 48.0 -67.1 -40.4 0.9 -1.1 8.5 47 47 A Q H X S+ 0 0 130 -4,-2.2 4,-1.7 2,-0.2 -2,-0.2 0.955 113.4 46.8 -63.4 -50.2 -2.1 -3.2 9.7 48 48 A L H <>S+ 0 0 27 -4,-2.7 5,-1.4 1,-0.2 6,-1.3 0.822 112.6 54.8 -58.5 -31.7 -1.9 -5.4 6.6 49 49 A H H ><5S+ 0 0 37 -4,-1.8 3,-1.8 -5,-0.2 -2,-0.2 0.965 106.5 46.4 -64.6 -54.6 1.9 -5.6 7.4 50 50 A D H 3<5S+ 0 0 142 -4,-2.6 -2,-0.2 1,-0.3 -1,-0.2 0.775 109.6 55.2 -66.4 -26.3 1.5 -6.8 11.0 51 51 A V T 3<5S- 0 0 108 -4,-1.7 -1,-0.3 -5,-0.2 -2,-0.2 0.457 123.1-104.7 -85.3 -1.5 -1.1 -9.5 10.0 52 52 A G T < 5S+ 0 0 24 -3,-1.8 19,-1.2 2,-0.3 18,-0.3 0.216 94.0 107.7 105.3 -14.8 1.4 -10.9 7.4 53 53 A V S