==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=19-FEB-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE 14-AUG-07 2JU4 . COMPND 2 MOLECULE: RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC . SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; . AUTHOR J.SONG,L.W.GUO,A.E.RUOHO,J.L.MARKLEY,CENTER FOR EUKARYOTIC S . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9991.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 18 20.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 9.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 202 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 107.0 54.0 26.7 4.8 2 2 A N - 0 0 142 2,-0.0 2,-0.1 3,-0.0 0, 0.0 0.089 360.0 -34.7 40.3-161.6 56.9 24.3 4.6 3 3 A L S S- 0 0 145 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.406 80.7 -83.2 -82.8 164.4 56.9 22.1 1.4 4 4 A E S S- 0 0 177 1,-0.2 -1,-0.1 -2,-0.1 -2,-0.0 -0.323 70.8 -66.4 -65.1 150.9 53.7 20.9 -0.2 5 5 A P - 0 0 119 0, 0.0 -1,-0.2 0, 0.0 2,-0.1 -0.066 60.8-133.6 -38.8 120.0 52.2 17.7 1.3 6 6 A P - 0 0 110 0, 0.0 2,-2.5 0, 0.0 0, 0.0 -0.369 22.9-101.7 -78.5 159.0 54.7 14.9 0.5 7 7 A K + 0 0 193 1,-0.1 2,-2.1 -2,-0.1 0, 0.0 -0.368 53.8 164.5 -78.7 66.1 53.6 11.5 -0.9 8 8 A A + 0 0 91 -2,-2.5 -1,-0.1 1,-0.1 0, 0.0 -0.434 63.2 45.9 -82.7 69.4 53.9 9.7 2.5 9 9 A E - 0 0 133 -2,-2.1 4,-0.2 0, 0.0 -1,-0.1 0.049 61.8-178.3-165.5 -71.0 51.9 6.6 1.4 10 10 A C > - 0 0 84 1,-0.1 3,-0.6 2,-0.1 -3,-0.0 0.899 14.8-157.6 51.7 98.1 52.7 5.0 -1.9 11 11 A R T 3 S+ 0 0 201 1,-0.2 -1,-0.1 0, 0.0 0, 0.0 0.691 77.4 89.9 -79.6 -16.0 50.2 2.1 -2.2 12 12 A S T 3 S+ 0 0 115 2,-0.0 -1,-0.2 0, 0.0 -2,-0.1 0.907 73.5 81.7 -46.7 -43.1 52.6 0.4 -4.7 13 13 A A < + 0 0 56 -3,-0.6 4,-0.0 -4,-0.2 -3,-0.0 0.042 53.1 162.8 -54.0 175.0 54.2 -1.3 -1.7 14 14 A T S S- 0 0 113 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 0.039 70.1 -6.8-157.8 -83.4 52.5 -4.4 -0.3 15 15 A R S S+ 0 0 211 1,-0.1 2,-1.3 3,-0.0 -2,-0.1 0.395 104.0 96.2-109.6 0.6 54.3 -6.9 2.0 16 16 A V S S+ 0 0 119 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 -0.188 82.5 56.5 -84.1 48.2 57.7 -5.4 1.7 17 17 A M S S+ 0 0 163 -2,-1.3 2,-0.1 -3,-0.1 0, 0.0 -0.931 86.5 25.7-171.7 146.5 57.2 -3.4 4.9 18 18 A G + 0 0 68 -2,-0.3 -3,-0.0 1,-0.1 0, 0.0 -0.426 62.5 110.0 89.7-169.6 56.4 -4.0 8.6 19 19 A G S S- 0 0 60 -2,-0.1 -1,-0.1 2,-0.1 2,-0.1 -0.051 86.4 -16.1 84.5 166.4 57.1 -7.2 10.5 20 20 A P S S+ 0 0 146 0, 0.0 2,-0.4 0, 0.0 -2,-0.0 -0.121 81.1 156.7 -41.7 100.2 59.6 -7.8 13.3 21 21 A C + 0 0 103 -2,-0.1 -2,-0.1 2,-0.0 0, 0.0 -0.978 14.8 164.5-137.4 125.3 61.9 -4.7 12.9 22 22 A T - 0 0 114 -2,-0.4 0, 0.0 2,-0.0 0, 0.0 -0.788 25.7-144.8-143.1 97.8 64.1 -3.1 15.5 23 23 A P - 0 0 114 0, 0.0 2,-0.4 0, 0.0 -2,-0.0 0.136 12.6-135.4 -50.1 173.8 66.8 -0.6 14.4 24 24 A R S S- 0 0 202 1,-0.0 -2,-0.0 0, 0.0 0, 0.0 -0.908 72.1 -29.8-142.2 112.7 70.2 -0.4 16.2 25 25 A K S S- 0 0 210 -2,-0.4 -1,-0.0 3,-0.0 0, 0.0 0.805 109.0 -88.9 52.8 24.1 71.8 2.9 17.2 26 26 A G S S- 0 0 40 3,-0.0 3,-0.1 0, 0.0 0, 0.0 0.207 78.3 -29.2 58.2 166.8 70.1 4.3 14.1 27 27 A P S S- 0 0 112 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.062 94.4 -65.3 -44.4 158.2 71.8 4.1 10.7 28 28 A P - 0 0 87 0, 0.0 2,-1.2 0, 0.0 9,-0.0 0.106 56.9-101.6 -42.3 160.1 75.6 4.2 10.6 29 29 A K + 0 0 183 1,-0.1 7,-0.1 7,-0.1 3,-0.0 -0.710 55.3 162.6 -92.7 93.3 77.3 7.5 11.8 30 30 A C + 0 0 68 -2,-1.2 -1,-0.1 1,-0.1 4,-0.0 0.524 37.9 100.1 -80.8-127.8 78.2 9.3 8.5 31 31 A K S S+ 0 0 186 1,-0.1 -1,-0.1 2,-0.0 -2,-0.0 0.731 96.8 50.4 53.7 16.0 79.1 13.0 8.5 32 32 A Q S S- 0 0 128 -3,-0.0 3,-0.4 2,-0.0 4,-0.2 0.061 73.0-174.7-172.3 42.5 82.7 11.7 8.5 33 33 A R + 0 0 155 1,-0.2 -3,-0.1 2,-0.1 -2,-0.0 -0.259 46.7 102.3 -50.2 115.9 83.1 9.1 5.7 34 34 A Q S S- 0 0 147 -2,-0.1 -1,-0.2 -4,-0.0 -4,-0.0 0.029 94.4 -40.0-158.5 -83.0 86.7 7.9 6.2 35 35 A T S S+ 0 0 106 -3,-0.4 -2,-0.1 2,-0.1 0, 0.0 -0.005 93.9 108.4-155.1 36.7 87.5 4.6 7.9 36 36 A R S S+ 0 0 91 -4,-0.2 3,-0.1 -7,-0.1 -7,-0.1 0.605 102.6 8.7 -92.9 -11.8 85.0 4.2 10.8 37 37 A Q S S+ 0 0 115 1,-0.2 2,-0.9 -9,-0.0 -2,-0.1 0.570 110.2 80.1-132.6 -47.5 83.1 1.4 9.0 38 38 A C + 0 0 106 2,-0.0 2,-0.3 0, 0.0 -1,-0.2 -0.527 63.1 136.4 -69.7 105.5 85.0 0.4 5.8 39 39 A K + 0 0 174 -2,-0.9 2,-0.0 -3,-0.1 -4,-0.0 -0.986 11.7 94.8-152.8 140.4 87.7 -2.0 7.2 40 40 A S S S+ 0 0 101 -2,-0.3 8,-0.0 1,-0.1 -2,-0.0 -0.323 80.0 8.7 178.3 -86.2 89.1 -5.3 6.2 41 41 A K S S- 0 0 147 1,-0.2 3,-0.1 6,-0.0 -1,-0.1 -0.896 89.7 -75.6-121.4 152.7 92.2 -5.6 4.0 42 42 A P - 0 0 105 0, 0.0 -1,-0.2 0, 0.0 2,-0.2 0.127 64.2 -84.5 -37.7 156.3 94.7 -3.0 2.9 43 43 A P S S+ 0 0 121 0, 0.0 2,-0.2 0, 0.0 0, 0.0 -0.448 74.4 118.5 -70.3 136.5 93.6 -0.6 0.1 44 44 A K - 0 0 118 -2,-0.2 2,-0.3 -3,-0.1 0, 0.0 -0.484 59.8 -74.1-160.6-125.8 94.1 -1.8 -3.5 45 45 A K S S- 0 0 155 -2,-0.2 2,-1.8 3,-0.0 5,-0.2 -0.953 90.5 -7.3-158.3 135.8 91.8 -2.6 -6.4 46 46 A G S S+ 0 0 51 3,-2.5 -2,-0.0 -2,-0.3 4,-0.0 -0.546 127.7 52.5 79.8 -85.1 89.4 -5.4 -7.2 47 47 A V S S+ 0 0 93 -2,-1.8 -1,-0.2 1,-0.1 3,-0.1 0.960 128.8 20.3 -48.1 -58.1 90.2 -7.7 -4.3 48 48 A Q S S- 0 0 64 -3,-0.2 -1,-0.1 1,-0.1 2,-0.1 0.972 121.4 -88.5 -76.7 -74.7 89.6 -4.9 -1.8 49 49 A G - 0 0 34 3,-0.0 -3,-2.5 1,-0.0 -1,-0.1 -0.216 44.9 -85.3-162.3-100.6 87.5 -2.3 -3.7 50 50 A C - 0 0 88 -5,-0.2 -3,-0.0 -2,-0.1 -2,-0.0 0.318 40.3-125.8-162.0 -36.1 88.7 0.5 -5.9 51 51 A G + 0 0 68 -3,-0.0 -6,-0.0 2,-0.0 -2,-0.0 0.978 41.1 174.0 76.6 59.6 89.5 3.6 -3.7 52 52 A D - 0 0 66 1,-0.1 7,-0.0 7,-0.0 -3,-0.0 0.461 25.0-140.5 -72.8-137.6 87.4 6.2 -5.5 53 53 A D S S+ 0 0 95 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.290 79.1 14.2-155.6 -56.7 87.0 9.7 -4.0 54 54 A I S S- 0 0 108 0, 0.0 5,-0.4 0, 0.0 4,-0.3 -0.639 73.7-163.0-135.4 79.3 83.5 11.2 -4.3 55 55 A P + 0 0 89 0, 0.0 6,-0.0 0, 0.0 0, 0.0 -0.014 69.6 54.5 -54.6 163.1 80.9 8.4 -5.2 56 56 A G S S+ 0 0 76 4,-0.1 5,-0.0 1,-0.0 0, 0.0 0.656 112.2 49.2 83.1 13.7 77.5 9.4 -6.5 57 57 A M S S- 0 0 160 -3,-0.3 4,-0.0 3,-0.0 -1,-0.0 0.376 135.8 -9.0-155.2 -17.1 79.1 11.5 -9.3 58 58 A E S S+ 0 0 118 -4,-0.3 3,-0.1 2,-0.0 0, 0.0 0.315 118.4 74.5-165.5 -7.3 81.7 9.2 -11.0 59 59 A G S S- 0 0 33 -5,-0.4 2,-0.3 1,-0.3 -7,-0.0 0.919 111.1 -16.9 -83.6 -46.6 82.0 6.1 -8.8 60 60 A C + 0 0 77 1,-0.1 -1,-0.3 2,-0.1 -4,-0.1 -0.901 67.2 124.6-148.1 177.1 78.8 4.4 -9.8 61 61 A G S > S+ 0 0 35 -2,-0.3 4,-0.6 -3,-0.1 5,-0.2 0.137 77.3 58.7 150.5 -22.4 75.4 5.2 -11.5 62 62 A T H >>S+ 0 0 90 3,-0.2 4,-1.8 2,-0.2 5,-1.2 0.882 102.8 45.7 -97.4 -60.1 75.2 2.6 -14.4 63 63 A D H 45S+ 0 0 114 1,-0.2 -1,-0.1 3,-0.2 -3,-0.0 0.227 126.9 36.6 -70.2 23.2 75.4 -0.8 -12.8 64 64 A I H 45S+ 0 0 89 4,-0.2 4,-0.3 5,-0.1 -1,-0.2 0.511 114.7 45.7-139.0 -46.8 72.9 0.5 -10.2 65 65 A T H <5S+ 0 0 115 -4,-0.6 -3,-0.2 2,-0.2 3,-0.2 0.849 131.8 23.7 -73.6 -31.4 70.4 2.9 -11.9 66 66 A V T <5S+ 0 0 102 -4,-1.8 2,-0.4 1,-0.2 -3,-0.2 0.857 142.4 10.7 -99.1 -50.3 69.9 0.4 -14.8 67 67 A I < - 0 0 109 -5,-1.2 -1,-0.2 4,-0.0 -2,-0.2 -0.846 69.1-174.9-134.3 100.5 70.9 -2.9 -13.3 68 68 A C > - 0 0 35 -2,-0.4 3,-3.6 -4,-0.3 4,-0.4 -0.812 35.8-122.4 -97.3 131.2 71.4 -3.1 -9.5 69 69 A P T 3 S+ 0 0 96 0, 0.0 -1,-0.1 0, 0.0 5,-0.1 0.724 108.6 75.7 -41.5 -22.0 72.6 -6.4 -8.0 70 70 A W T > S+ 0 0 214 2,-0.1 3,-0.6 3,-0.1 -6,-0.0 0.845 96.1 48.0 -63.9 -29.7 69.4 -6.3 -5.9 71 71 A E T < S+ 0 0 132 -3,-3.6 2,-2.5 1,-0.2 -1,-0.1 0.963 121.6 27.2 -74.2 -80.6 67.5 -7.3 -9.0 72 72 A A T > S+ 0 0 70 -4,-0.4 2,-2.4 1,-0.1 3,-1.2 -0.204 80.5 177.0 -77.0 53.0 69.4 -10.3 -10.5 73 73 A C T < + 0 0 76 -2,-2.5 -3,-0.1 -3,-0.6 -1,-0.1 -0.298 60.6 65.9 -59.3 81.7 70.7 -11.2 -7.0 74 74 A N T 3 S+ 0 0 135 -2,-2.4 -1,-0.2 -5,-0.1 -2,-0.1 0.218 83.4 60.1-165.5 -49.4 72.5 -14.3 -8.2 75 75 A H < + 0 0 151 -3,-1.2 -2,-0.1 -6,-0.1 0, 0.0 0.943 60.5 146.9 -58.3 -90.8 75.4 -13.5 -10.6 76 76 A C - 0 0 66 -4,-0.2 3,-0.1 4,-0.0 4,-0.1 0.699 50.0-126.8 57.4 125.0 77.8 -11.3 -8.6 77 77 A E S S- 0 0 166 1,-0.1 2,-0.2 2,-0.1 3,-0.1 0.987 79.6 -6.8 -66.0 -78.3 81.5 -11.8 -9.4 78 78 A L S S+ 0 0 108 1,-0.2 -1,-0.1 2,-0.1 -31,-0.0 -0.508 113.3 53.2-110.0-177.8 83.0 -12.5 -6.0 79 79 A H + 0 0 128 -2,-0.2 -1,-0.2 1,-0.1 -2,-0.1 0.984 57.7 151.4 56.6 59.0 81.6 -12.4 -2.5 80 80 A E > + 0 0 126 1,-0.2 3,-0.9 -3,-0.1 -1,-0.1 0.664 61.1 67.9 -94.4 -17.3 78.7 -14.8 -3.3 81 81 A L G > S+ 0 0 126 1,-0.3 3,-1.7 2,-0.1 5,-0.3 0.736 78.2 82.5 -73.6 -18.6 78.4 -16.2 0.3 82 82 A A G 3 + 0 0 78 1,-0.3 -1,-0.3 2,-0.2 3,-0.2 0.375 67.3 90.5 -67.6 12.5 77.3 -12.7 1.4 83 83 A Q G < S+ 0 0 116 -3,-0.9 -1,-0.3 1,-0.2 -2,-0.1 0.778 75.7 60.9 -79.8 -24.7 73.8 -13.8 0.2 84 84 A Y S < S- 0 0 202 -3,-1.7 -1,-0.2 1,-0.1 -2,-0.2 0.746 102.4-132.6 -73.8 -20.0 72.9 -15.3 3.6 85 85 A G 0 0 71 -4,-0.3 -3,-0.1 -3,-0.2 -2,-0.1 0.592 360.0 360.0 79.6 7.0 73.3 -11.8 5.1 86 86 A I 0 0 185 -5,-0.3 -1,-0.1 0, 0.0 -4,-0.1 0.466 360.0 360.0 -67.4 360.0 75.4 -13.3 7.9