==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 12-SEP-07 2JV8 . COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN NE1242; . SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOMONAS EUROPAEA ATCC 19718; . AUTHOR Y.WU,A.YEE,A.C.ZERI,V.GUIDO,D.SUKUMARAN,C.H.ARROWSMITH, . 73 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5972.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 63.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 20.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 19.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 13.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 196 0, 0.0 16,-0.3 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0-168.0 16.3 5.2 12.4 2 2 A T + 0 0 81 1,-0.2 16,-2.2 15,-0.1 2,-0.4 0.596 360.0 100.4 67.3 12.7 13.1 6.9 11.4 3 3 A H - 0 0 97 13,-0.2 2,-0.6 14,-0.2 13,-0.2 -0.983 59.8-148.7-130.9 142.9 12.3 4.0 9.0 4 4 A H E -A 15 0A 85 11,-1.6 11,-1.5 -2,-0.4 2,-0.4 -0.945 11.0-168.0-112.9 118.8 9.9 1.1 9.4 5 5 A T E +A 14 0A 80 -2,-0.6 2,-0.3 9,-0.2 9,-0.2 -0.846 14.7 166.3-101.2 141.5 10.8 -2.2 7.6 6 6 A E E -A 13 0A 34 7,-0.9 7,-3.5 -2,-0.4 2,-0.6 -0.976 26.8-146.1-156.0 139.4 8.2 -4.9 7.4 7 7 A V E -A 12 0A 102 -2,-0.3 2,-0.7 5,-0.2 5,-0.2 -0.930 14.2-174.3-113.5 113.3 7.7 -8.1 5.5 8 8 A F E > S-A 11 0A 46 3,-3.4 3,-2.7 -2,-0.6 -2,-0.0 -0.904 72.6 -42.1-110.3 105.2 4.2 -9.1 4.5 9 9 A E T 3 S- 0 0 160 -2,-0.7 -1,-0.1 1,-0.3 3,-0.1 0.701 127.3 -36.2 51.1 27.6 3.9 -12.5 2.9 10 10 A G T 3 S+ 0 0 46 1,-0.3 2,-0.5 58,-0.0 -1,-0.3 0.221 116.5 110.6 113.8 -13.8 7.1 -11.8 0.9 11 11 A G E < -A 8 0A 0 -3,-2.7 -3,-3.4 57,-0.0 2,-0.5 -0.830 60.0-138.7-100.0 131.0 6.5 -8.1 0.2 12 12 A T E -A 7 0A 46 -2,-0.5 12,-2.5 -5,-0.2 2,-0.6 -0.734 8.7-147.8 -90.5 129.0 8.7 -5.5 1.9 13 13 A I E -AB 6 23A 1 -7,-3.5 -7,-0.9 -2,-0.5 2,-0.7 -0.867 11.8-161.8 -97.8 120.5 7.2 -2.4 3.3 14 14 A D E +AB 5 22A 56 8,-3.7 8,-1.7 -2,-0.6 2,-0.5 -0.902 13.6 174.1-107.4 110.9 9.4 0.6 3.1 15 15 A I E -AB 4 21A 42 -11,-1.5 -11,-1.6 -2,-0.7 2,-0.4 -0.976 13.9-173.4-114.6 119.3 8.6 3.6 5.3 16 16 A E E > - B 0 19A 99 3,-1.5 3,-2.3 4,-0.7 -13,-0.2 -0.903 60.7 -0.0-119.6 140.3 11.3 6.3 5.2 17 17 A D T 3 S- 0 0 117 -2,-0.4 -14,-0.2 -16,-0.3 -1,-0.2 0.808 124.4 -66.2 60.3 30.3 11.7 9.5 7.1 18 18 A D T 3 S+ 0 0 133 -16,-2.2 -1,-0.3 1,-0.3 2,-0.2 0.675 129.6 59.8 61.1 19.6 8.5 8.7 9.0 19 19 A T E < +B 16 0A 84 -3,-2.3 -3,-1.5 -17,-0.3 -1,-0.3 -0.691 58.2 84.8-146.4-163.7 6.8 9.1 5.7 20 20 A S E - 0 0 58 -2,-0.2 2,-0.7 -5,-0.2 -4,-0.7 0.915 57.3-135.5 65.3 103.8 6.8 7.7 2.1 21 21 A L E +B 15 0A 15 7,-0.3 7,-3.4 -6,-0.1 2,-0.4 -0.825 37.8 161.6 -90.7 115.6 4.7 4.6 1.5 22 22 A T E -BC 14 27A 16 -8,-1.7 -8,-3.7 -2,-0.7 2,-0.4 -0.994 23.9-165.2-135.3 140.2 6.8 2.2 -0.5 23 23 A I E > S-BC 13 26A 0 3,-2.6 3,-2.1 -2,-0.4 -10,-0.2 -0.975 83.1 -14.6-128.2 117.5 6.5 -1.5 -1.1 24 24 A N T 3 S- 0 0 105 -12,-2.5 -11,-0.1 -2,-0.4 3,-0.1 0.625 130.0 -57.1 67.1 15.5 9.4 -3.5 -2.6 25 25 A G T 3 S+ 0 0 53 -13,-0.3 2,-0.4 1,-0.3 -1,-0.3 0.250 110.8 128.7 97.4 -10.8 10.8 -0.0 -3.5 26 26 A K E < -C 23 0A 101 -3,-2.1 -3,-2.6 1,-0.1 -1,-0.3 -0.656 65.1-115.3 -84.7 129.2 7.7 0.8 -5.5 27 27 A E E -C 22 0A 149 -2,-0.4 2,-0.8 -5,-0.2 -5,-0.2 -0.438 23.1-153.8 -66.3 124.8 6.0 4.1 -4.6 28 28 A I - 0 0 7 -7,-3.4 2,-0.8 -2,-0.2 -7,-0.3 -0.864 6.2-160.2-103.8 101.7 2.5 3.7 -3.1 29 29 A S - 0 0 66 -2,-0.8 13,-1.0 -9,-0.1 14,-0.4 -0.738 11.1-153.2 -83.5 108.6 0.5 6.8 -3.8 30 30 A Y - 0 0 82 -2,-0.8 2,-0.4 11,-0.2 10,-0.1 -0.515 6.4-158.1 -77.0 149.6 -2.5 6.8 -1.3 31 31 A V - 0 0 28 -2,-0.2 10,-0.3 8,-0.0 2,-0.1 -0.971 16.6-146.7-129.0 115.5 -5.7 8.6 -2.2 32 32 A H - 0 0 111 -2,-0.4 7,-1.0 8,-0.2 5,-0.0 -0.390 17.3-136.1 -85.1 159.8 -7.7 9.5 0.9 33 33 A D + 0 0 105 5,-0.2 -1,-0.1 -2,-0.1 5,-0.1 0.157 68.3 125.2 -93.8 16.1 -11.5 9.6 1.2 34 34 A A S S- 0 0 47 5,-0.1 5,-0.1 1,-0.1 3,-0.0 0.190 81.7 -92.3 -73.2-173.6 -11.1 12.9 3.0 35 35 A V S S+ 0 0 149 1,-0.2 3,-0.1 3,-0.1 -1,-0.1 0.833 122.8 59.0 -71.4 -32.6 -12.5 16.4 2.5 36 36 A K S S+ 0 0 194 1,-0.2 2,-0.3 0, 0.0 -1,-0.2 0.885 122.4 9.3 -62.6 -39.4 -9.5 17.4 0.4 37 37 A N - 0 0 85 2,-0.1 2,-0.8 -3,-0.0 -1,-0.2 -0.991 56.4-154.3-151.4 132.2 -10.1 14.6 -2.1 38 38 A K + 0 0 146 -2,-0.3 2,-0.3 -3,-0.1 -5,-0.2 -0.800 59.6 95.2-109.3 87.6 -12.9 12.1 -2.8 39 39 A W - 0 0 131 -7,-1.0 2,-0.2 -2,-0.8 -5,-0.1 -0.965 66.2-107.3-162.7 165.4 -11.2 9.2 -4.5 40 40 A S - 0 0 24 -2,-0.3 -8,-0.2 1,-0.1 8,-0.1 -0.631 51.6 -72.7-101.9 164.7 -9.7 5.8 -3.8 41 41 A S > - 0 0 3 3,-0.4 3,-0.7 -10,-0.3 6,-0.2 -0.248 41.7-126.0 -56.8 138.9 -6.0 4.7 -3.7 42 42 A R T 3 S+ 0 0 202 -13,-1.0 -1,-0.1 1,-0.3 -12,-0.1 0.773 110.7 46.2 -62.5 -28.2 -4.6 4.5 -7.2 43 43 A Y T 3 S+ 0 0 80 -14,-0.4 -1,-0.3 1,-0.3 -13,-0.1 0.714 121.1 38.2 -86.2 -22.7 -3.5 0.9 -6.6 44 44 A L S X S- 0 0 9 -3,-0.7 3,-0.7 3,-0.1 -3,-0.4 -0.755 82.1-167.4-130.8 84.7 -6.8 -0.2 -5.1 45 45 A P T 3 - 0 0 72 0, 0.0 3,-0.1 0, 0.0 -3,-0.1 -0.589 68.1 -8.1 -81.9 128.7 -9.7 1.5 -6.9 46 46 A Y T 3 S+ 0 0 177 -2,-0.3 2,-0.3 1,-0.2 -7,-0.0 0.598 99.3 128.4 67.4 12.9 -13.2 1.5 -5.5 47 47 A T < - 0 0 59 -3,-0.7 2,-0.6 -6,-0.2 -1,-0.2 -0.792 56.4-129.9 -98.9 144.2 -12.1 -0.9 -2.8 48 48 A Q + 0 0 199 -2,-0.3 2,-0.3 -3,-0.1 -8,-0.0 -0.837 30.1 172.1-102.7 123.9 -12.9 -0.1 0.9 49 49 A Y - 0 0 64 -2,-0.6 3,-0.1 1,-0.1 6,-0.0 -0.782 27.8-138.9-122.8 168.3 -10.2 -0.3 3.5 50 50 A D S S- 0 0 138 -2,-0.3 2,-0.2 1,-0.2 -1,-0.1 0.935 71.3 -1.0 -94.7 -60.2 -10.1 0.7 7.2 51 51 A S > - 0 0 65 1,-0.1 4,-2.3 0, 0.0 -1,-0.2 -0.685 69.1-102.1-130.6 179.4 -6.8 2.4 8.0 52 52 A L H > S+ 0 0 70 2,-0.2 4,-2.3 -2,-0.2 5,-0.1 0.928 122.0 44.1 -72.9 -46.5 -3.4 3.3 6.4 53 53 A L H > S+ 0 0 75 1,-0.2 4,-1.8 2,-0.2 5,-0.2 0.910 115.2 50.7 -63.9 -41.8 -1.5 0.5 7.8 54 54 A D H > S+ 0 0 69 1,-0.2 4,-2.5 2,-0.2 -2,-0.2 0.908 108.1 54.2 -58.3 -43.8 -4.4 -1.8 6.9 55 55 A L H X S+ 0 0 7 -4,-2.3 4,-2.1 2,-0.2 -2,-0.2 0.933 105.7 51.1 -56.6 -51.3 -4.3 -0.4 3.4 56 56 A A H X S+ 0 0 3 -4,-2.3 4,-1.4 1,-0.2 -1,-0.2 0.906 115.2 41.8 -56.5 -46.0 -0.6 -1.2 2.9 57 57 A R H X S+ 0 0 95 -4,-1.8 4,-2.4 1,-0.2 -1,-0.2 0.848 109.8 58.7 -71.5 -34.4 -1.0 -4.8 3.9 58 58 A A H X S+ 0 0 26 -4,-2.5 4,-1.9 -5,-0.2 -2,-0.2 0.861 103.2 54.1 -62.2 -36.2 -4.3 -5.1 2.0 59 59 A I H X S+ 0 0 0 -4,-2.1 4,-2.4 2,-0.2 7,-0.2 0.957 110.6 43.6 -63.1 -50.5 -2.4 -4.2 -1.2 60 60 A I H < S+ 0 0 2 -4,-1.4 -2,-0.2 1,-0.2 -1,-0.2 0.883 116.0 49.2 -63.2 -39.3 0.2 -6.9 -0.8 61 61 A R H < S+ 0 0 210 -4,-2.4 -1,-0.2 1,-0.2 -2,-0.2 0.834 117.2 40.2 -67.5 -34.1 -2.5 -9.4 0.2 62 62 A D H < S+ 0 0 115 -4,-1.9 2,-0.5 -5,-0.2 -2,-0.2 0.758 112.9 54.5 -92.9 -25.3 -4.7 -8.5 -2.8 63 63 A T >< - 0 0 26 -4,-2.4 3,-1.0 -5,-0.2 4,-0.2 -0.940 57.8-162.3-118.5 122.6 -2.1 -8.1 -5.5 64 64 A V G >> S+ 0 0 57 -2,-0.5 4,-1.4 1,-0.2 3,-0.7 0.577 81.9 85.5 -75.4 -9.5 0.4 -10.9 -6.3 65 65 A E G 34 S+ 0 0 137 1,-0.3 -1,-0.2 2,-0.2 5,-0.1 0.859 95.1 40.3 -57.6 -37.5 2.5 -8.2 -8.1 66 66 A F G <4 S+ 0 0 12 -3,-1.0 -1,-0.3 -7,-0.2 -2,-0.2 0.485 103.0 71.9 -92.5 -4.1 4.1 -7.3 -4.8 67 67 A S T <4 S- 0 0 48 -3,-0.7 2,-0.6 -4,-0.2 -2,-0.2 0.879 92.4-146.3 -76.2 -40.2 4.3 -11.0 -3.7 68 68 A G < + 0 0 50 -4,-1.4 2,-1.5 2,-0.2 -1,-0.2 -0.890 68.1 59.2 119.5-104.0 7.1 -11.6 -6.2 69 69 A V S S+ 0 0 153 -2,-0.6 2,-0.1 -3,-0.1 -4,-0.1 -0.503 79.9 90.5 -75.7 88.5 7.4 -15.0 -7.9 70 70 A K + 0 0 122 -2,-1.5 -2,-0.2 -5,-0.1 -3,-0.1 -0.468 29.0 163.2-176.7 106.3 4.0 -15.4 -9.7 71 71 A E S S- 0 0 212 1,-0.2 2,-0.3 -2,-0.1 -2,-0.1 0.635 72.5 -57.5 -98.2 -19.7 3.4 -14.3 -13.3 72 72 A G 0 0 46 1,-0.1 -1,-0.2 0, 0.0 0, 0.0 -0.929 360.0 360.0 174.6-151.7 0.3 -16.4 -13.7 73 73 A S 0 0 192 -2,-0.3 -1,-0.1 -3,-0.1 -2,-0.1 0.206 360.0 360.0-145.3 360.0 -1.0 -20.0 -13.4