==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 25-SEP-07 2JVR . COMPND 2 MOLECULE: NUCLEOLAR PROTEIN 3; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR L.SKRISOVSKA,F.H-T.ALLAIN . 80 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4677.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 67.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 23.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 7.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 17 21.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 25 A P 0 0 131 0, 0.0 51,-0.1 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0-121.8 9.6 16.0 6.2 2 26 A A - 0 0 102 49,-0.2 2,-0.3 1,-0.1 50,-0.2 0.794 360.0 -0.0 -55.5 -28.8 6.6 18.1 4.8 3 27 A K - 0 0 49 48,-1.7 2,-0.2 2,-0.0 -1,-0.1 -0.895 55.0-164.5-144.8 172.6 4.7 15.0 6.0 4 28 A R + 0 0 143 -2,-0.3 2,-0.3 -3,-0.0 49,-0.0 -0.768 29.5 158.0-157.0 121.8 5.0 11.6 7.6 5 29 A Y E -A 50 0A 2 45,-1.4 45,-0.8 -2,-0.2 2,-0.3 -0.902 28.8-146.3-136.8 170.2 2.0 9.2 7.3 6 30 A R E -A 49 0A 78 -2,-0.3 72,-2.8 43,-0.2 73,-1.1 -0.994 15.0-169.5-140.2 133.4 1.2 5.4 7.4 7 31 A I E -AB 48 77A 0 41,-2.2 41,-0.7 -2,-0.3 2,-0.3 -0.942 17.0-131.2-119.1 151.3 -1.5 3.6 5.4 8 32 A T E -AB 47 76A 17 68,-2.6 68,-1.9 -2,-0.3 2,-0.4 -0.724 13.6-168.3 -91.5 143.4 -3.0 0.1 5.6 9 33 A M E +AB 46 75A 0 37,-2.8 37,-2.7 -2,-0.3 2,-0.3 -0.953 40.3 112.7-137.5 112.8 -3.3 -2.1 2.5 10 34 A K E + B 0 74A 44 64,-2.3 64,-3.2 -2,-0.4 35,-0.1 -0.970 28.5 167.7-165.4 161.9 -5.5 -5.1 3.3 11 35 A N - 0 0 51 -2,-0.3 62,-0.1 3,-0.3 34,-0.1 -0.010 51.3 -90.0-156.9 -78.2 -8.7 -6.9 2.7 12 36 A L S S+ 0 0 118 60,-0.3 32,-0.2 32,-0.1 61,-0.0 0.199 102.1 51.8-167.6 -54.0 -9.3 -10.6 3.8 13 37 A P S S+ 0 0 106 0, 0.0 2,-0.6 0, 0.0 58,-0.0 0.574 96.0 78.6 -77.8 -7.0 -8.5 -13.7 1.6 14 38 A E - 0 0 12 58,-0.2 2,-1.9 30,-0.0 -3,-0.3 -0.878 55.8-165.1-116.3 108.8 -4.9 -12.6 0.8 15 39 A G - 0 0 37 -2,-0.6 30,-0.2 28,-0.1 -5,-0.0 -0.440 35.3-169.8 -76.2 56.8 -1.9 -13.0 3.2 16 40 A C - 0 0 8 -2,-1.9 22,-0.6 28,-1.1 2,-0.2 -0.066 9.4-147.8 -53.4 156.6 0.1 -10.5 1.1 17 41 A S > - 0 0 39 20,-0.1 4,-2.5 1,-0.1 3,-0.4 -0.756 29.6-102.1-121.7 165.8 3.9 -9.9 1.6 18 42 A W H > S+ 0 0 59 1,-0.2 4,-2.7 -2,-0.2 5,-0.3 0.940 122.7 51.9 -61.6 -40.6 6.1 -6.8 1.1 19 43 A Q H > S+ 0 0 151 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.871 112.5 46.8 -57.3 -34.4 7.4 -8.1 -2.2 20 44 A D H > S+ 0 0 51 -3,-0.4 4,-2.6 2,-0.2 -2,-0.2 0.936 113.2 45.8 -75.7 -48.7 3.9 -8.7 -3.4 21 45 A L H X S+ 0 0 0 -4,-2.5 4,-2.8 2,-0.2 -2,-0.2 0.842 113.2 49.5 -68.4 -36.0 2.5 -5.3 -2.3 22 46 A K H X S+ 0 0 49 -4,-2.7 4,-2.5 -5,-0.2 5,-0.2 0.899 109.1 54.8 -68.6 -38.4 5.5 -3.4 -3.8 23 47 A D H X S+ 0 0 53 -4,-1.8 4,-2.0 -5,-0.3 -2,-0.2 0.980 114.6 38.8 -53.7 -56.7 5.0 -5.4 -7.0 24 48 A L H X S+ 0 0 2 -4,-2.6 4,-1.9 1,-0.2 -2,-0.2 0.932 112.5 57.2 -57.7 -49.2 1.4 -4.2 -7.2 25 49 A A H X>S+ 0 0 0 -4,-2.8 5,-2.0 1,-0.3 4,-1.7 0.896 108.4 46.4 -54.7 -40.3 2.2 -0.7 -5.9 26 50 A R H <5S+ 0 0 134 -4,-2.5 -1,-0.3 1,-0.2 -2,-0.2 0.869 110.1 55.0 -67.4 -38.8 4.7 -0.2 -8.8 27 51 A E H <5S+ 0 0 125 -4,-2.0 -1,-0.2 -5,-0.2 -2,-0.2 0.849 115.6 39.3 -49.9 -40.4 2.0 -1.6 -11.2 28 52 A N H <5S- 0 0 45 -4,-1.9 -2,-0.2 -3,-0.2 -1,-0.2 0.622 123.2 -99.1 -97.0 -22.4 -0.3 1.0 -9.9 29 53 A S T <5S+ 0 0 73 -4,-1.7 -3,-0.2 1,-0.4 -4,-0.1 0.206 82.1 120.7 114.9 2.4 2.2 4.0 -9.6 30 54 A L < + 0 0 6 -5,-2.0 -1,-0.4 -6,-0.2 -2,-0.1 -0.305 21.5 159.3 -72.2 169.5 3.0 3.9 -5.8 31 55 A E + 0 0 101 -2,-0.1 -1,-0.1 3,-0.1 -5,-0.1 0.263 19.7 171.3-151.9 -56.7 6.6 3.5 -4.6 32 56 A T - 0 0 5 1,-0.1 18,-0.2 -7,-0.1 3,-0.1 0.183 48.9 -88.6 54.1-174.9 6.7 4.8 -1.0 33 57 A T S S- 0 0 76 16,-2.7 2,-0.3 1,-0.4 17,-0.2 0.883 89.3 -46.1 -80.9 -50.4 9.6 4.4 1.6 34 58 A F E -C 49 0A 84 15,-0.9 15,-2.2 2,-0.0 -1,-0.4 -0.960 48.7-126.0-170.6 170.5 8.6 1.1 3.0 35 59 A S E -C 48 0A 12 13,-0.3 2,-0.9 -2,-0.3 13,-0.3 -0.998 18.8-126.5-142.9 142.5 5.7 -1.1 4.4 36 60 A S E +C 47 0A 50 11,-2.6 11,-0.6 -2,-0.3 2,-0.2 -0.772 57.8 142.2 -77.1 100.6 5.0 -3.1 7.6 37 61 A V + 0 0 9 -2,-0.9 2,-0.6 9,-0.2 9,-0.2 -0.804 38.1 38.2-132.6 173.9 4.1 -6.5 6.1 38 62 A N S S+ 0 0 97 -22,-0.6 3,-0.1 -2,-0.2 8,-0.1 -0.015 91.2 91.1 79.9 -27.5 4.6 -10.3 6.8 39 63 A T S S- 0 0 105 -2,-0.6 2,-0.3 1,-0.2 -1,-0.1 0.989 91.6 -51.1 -64.8 -83.3 4.2 -10.0 10.6 40 64 A R + 0 0 159 5,-0.2 2,-0.2 0, 0.0 -1,-0.2 -0.978 63.7 123.2-160.6 154.5 0.4 -10.5 11.6 41 65 A D S S- 0 0 91 -2,-0.3 -26,-0.0 -3,-0.1 0, 0.0 -0.683 100.7 -30.6-166.1-135.4 -3.2 -9.4 10.9 42 66 A F S S- 0 0 74 -2,-0.2 -27,-0.1 0, 0.0 -30,-0.0 0.870 130.7 -53.8 -54.1 -34.7 -6.0 -11.8 9.9 43 67 A D S S+ 0 0 71 -29,-0.1 2,-0.3 -27,-0.0 -28,-0.1 -0.018 121.5 3.2-163.0 -54.3 -2.8 -13.3 8.5 44 68 A G + 0 0 3 -4,-0.2 -28,-1.1 -30,-0.2 2,-0.3 -0.788 59.3 153.0-158.5 103.0 -1.0 -10.7 6.3 45 69 A T - 0 0 13 -2,-0.3 2,-0.3 -30,-0.2 -35,-0.2 -0.843 32.7-131.6-114.0 155.8 -1.8 -7.0 5.5 46 70 A G E -A 9 0A 0 -37,-2.7 -37,-2.8 -2,-0.3 2,-0.3 -0.742 10.2-162.0 -99.9 160.4 0.7 -4.3 4.6 47 71 A A E -AC 8 36A 7 -11,-0.6 -11,-2.6 -2,-0.3 -39,-0.3 -0.770 16.6-159.7-144.5 98.5 1.1 -0.9 6.0 48 72 A L E -AC 7 35A 0 -41,-0.7 -41,-2.2 -13,-0.3 2,-0.3 -0.196 3.0-157.9 -71.9 164.2 3.1 1.6 3.9 49 73 A E E +AC 6 34A 14 -15,-2.2 -16,-2.7 -43,-0.2 -15,-0.9 -0.998 13.1 168.0-142.3 145.1 4.8 4.9 4.8 50 74 A F E -A 5 0A 51 -45,-0.8 -45,-1.4 -2,-0.3 6,-0.1 -0.990 39.7-127.6-147.0 156.0 6.0 8.1 3.0 51 75 A P S S+ 0 0 28 0, 0.0 -48,-1.7 0, 0.0 2,-0.3 0.350 96.8 55.4 -72.4 1.9 7.3 11.7 3.8 52 76 A S S >> S- 0 0 31 -50,-0.2 3,-1.8 -51,-0.1 4,-0.6 -0.917 72.3-142.8-146.6 118.9 4.6 13.3 1.5 53 77 A E H 3> S+ 0 0 91 -2,-0.3 4,-2.8 1,-0.3 5,-0.3 0.612 91.7 83.3 -57.8 -13.6 0.8 12.8 1.6 54 78 A E H 3> S+ 0 0 149 1,-0.2 4,-2.1 2,-0.2 -1,-0.3 0.925 95.5 43.4 -48.1 -48.2 0.7 12.9 -2.3 55 79 A I H <> S+ 0 0 34 -3,-1.8 4,-2.2 2,-0.2 -1,-0.2 0.859 113.3 52.2 -72.2 -35.9 1.6 9.1 -2.2 56 80 A L H X S+ 0 0 9 -4,-0.6 4,-2.4 2,-0.2 -2,-0.2 0.962 112.9 42.8 -59.5 -55.1 -0.9 8.4 0.6 57 81 A V H X S+ 0 0 65 -4,-2.8 4,-1.1 2,-0.2 -2,-0.2 0.862 109.4 60.5 -67.9 -37.6 -3.8 10.1 -1.2 58 82 A E H >X S+ 0 0 70 -4,-2.1 3,-2.1 -5,-0.3 4,-0.8 0.983 109.3 39.5 -47.7 -68.9 -2.8 8.5 -4.4 59 83 A A H >X>S+ 0 0 0 -4,-2.2 4,-2.9 1,-0.3 3,-1.0 0.873 109.7 60.3 -57.3 -38.0 -3.2 4.9 -3.0 60 84 A L H 3<5S+ 0 0 41 -4,-2.4 -1,-0.3 1,-0.3 -2,-0.2 0.728 121.7 27.9 -59.7 -20.6 -6.4 6.0 -1.1 61 85 A E H <<5S+ 0 0 160 -3,-2.1 -1,-0.3 -4,-1.1 -2,-0.3 0.319 129.3 41.4-117.7 6.1 -7.7 6.8 -4.7 62 86 A R H <<5S+ 0 0 117 -3,-1.0 -3,-0.2 -4,-0.8 -2,-0.2 0.654 126.6 24.3-123.4 -29.6 -5.6 4.2 -6.8 63 87 A L T ><5S+ 0 0 0 -4,-2.9 3,-1.0 -5,-0.2 2,-0.9 0.237 81.9 126.7-123.2 2.7 -5.6 1.0 -4.7 64 88 A N T 3 -D 71 0B 15 3,-1.9 3,-2.3 -2,-0.5 4,-0.1 -0.840 64.6 -53.8-108.6 88.6 -4.7 -7.5 -7.1 69 93 A R T 3 S- 0 0 134 -2,-0.7 -1,-0.1 1,-0.3 3,-0.1 0.724 125.7 -31.8 44.6 27.5 -3.6 -10.2 -9.6 70 94 A G T 3 S+ 0 0 63 1,-0.6 -1,-0.3 0, 0.0 2,-0.2 0.342 135.1 77.1 109.3 -2.6 -6.7 -12.2 -8.4 71 95 A S E < S-D 68 0B 45 -3,-2.3 -3,-1.9 -57,-0.0 -1,-0.6 -0.437 74.1-134.4-105.2-169.2 -6.8 -11.0 -4.8 72 96 A V E -D 67 0B 44 -5,-0.3 2,-0.4 -2,-0.2 -60,-0.3 -0.990 11.3-155.5-142.8 157.3 -8.2 -7.5 -3.8 73 97 A I E -D 66 0B 0 -7,-2.6 -7,-2.1 -2,-0.3 -8,-1.0 -0.996 5.7-162.3-132.3 145.1 -6.9 -4.7 -1.5 74 98 A T E -B 10 0A 31 -64,-3.2 -64,-2.3 -2,-0.4 2,-0.4 -0.948 22.3-162.9-117.3 136.2 -8.7 -1.9 0.3 75 99 A V E +B 9 0A 2 -2,-0.4 2,-0.3 -66,-0.2 -66,-0.2 -0.964 15.5 154.9-137.2 142.2 -6.4 0.9 1.5 76 100 A E E -B 8 0A 60 -68,-1.9 -68,-2.6 -2,-0.4 -19,-0.0 -0.997 47.5 -76.2-162.7 154.6 -6.6 3.8 4.0 77 101 A R E +B 7 0A 152 -2,-0.3 -70,-0.2 -70,-0.2 -72,-0.0 -0.304 41.0 175.8 -51.1 131.0 -4.9 6.3 6.3 78 102 A D S S+ 0 0 75 -72,-2.8 -71,-0.2 2,-0.0 -1,-0.1 0.486 76.3 30.3-130.1 -11.4 -3.8 4.4 9.5 79 103 A D 0 0 97 -73,-1.1 -72,-0.1 0, 0.0 -2,-0.1 0.233 360.0 360.0-126.8 8.2 -1.9 7.1 11.6 80 104 A N 0 0 90 -74,-0.3 -73,-0.1 -75,-0.0 -3,-0.1 0.492 360.0 360.0-140.8 360.0 -3.8 10.2 10.3