==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN, IMMUNE SYSTEM 12-OCT-07 2JWG . COMPND 2 MOLECULE: VARIANT SURFACE GLYCOPROTEIN ILTAT 1.24; . SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA; . AUTHOR N.G.JONES,D.NIETLISPACH,R.SHARMA,D.F.BURKE,I.EYRES,M.MUES,H. . 46 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3920.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 23 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 4 8.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 13.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 19.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 382 A G 0 0 105 0, 0.0 2,-0.0 0, 0.0 5,-0.0 0.000 360.0 360.0 360.0 40.0 -7.8 10.5 5.8 2 383 A K - 0 0 170 1,-0.3 5,-0.1 2,-0.1 0, 0.0 0.239 360.0 -3.2-100.5-135.8 -7.0 12.1 2.5 3 384 A S > - 0 0 72 1,-0.1 4,-2.4 4,-0.1 -1,-0.3 -0.343 66.6-129.4 -60.3 131.0 -6.1 10.5 -0.8 4 385 A P H > S+ 0 0 61 0, 0.0 4,-2.8 0, 0.0 5,-0.2 0.834 108.3 58.7 -53.1 -34.7 -6.0 6.6 -0.4 5 386 A E H > S+ 0 0 113 1,-0.2 4,-2.3 2,-0.2 33,-0.1 0.964 109.4 42.3 -59.2 -50.6 -2.6 6.6 -2.1 6 387 A A H > S+ 0 0 41 -3,-0.3 4,-1.0 1,-0.2 -1,-0.2 0.869 111.3 58.1 -63.0 -36.9 -1.2 8.9 0.6 7 388 A E H >< S+ 0 0 62 -4,-2.4 3,-0.8 1,-0.2 4,-0.5 0.952 110.1 41.6 -58.3 -50.8 -3.1 6.9 3.2 8 389 A a H >X S+ 0 0 0 -4,-2.8 3,-1.5 1,-0.2 4,-0.7 0.874 103.8 69.1 -63.4 -40.1 -1.3 3.7 2.2 9 390 A N H 3< S+ 0 0 45 -4,-2.3 27,-0.2 1,-0.3 -1,-0.2 0.780 94.2 56.2 -49.8 -36.7 2.1 5.5 1.8 10 391 A K T << S+ 0 0 155 -4,-1.0 -1,-0.3 -3,-0.8 -2,-0.2 0.741 90.4 73.0 -70.8 -29.5 2.3 6.1 5.6 11 392 A I T <4 + 0 0 26 -3,-1.5 -1,-0.2 -4,-0.5 -2,-0.2 0.945 62.9 179.3 -54.0 -53.8 2.0 2.4 6.6 12 393 A T < + 0 0 92 -4,-0.7 2,-0.3 -3,-0.1 -1,-0.1 0.807 45.3 108.2 52.9 36.2 5.5 1.4 5.4 13 394 A E > - 0 0 95 1,-0.1 4,-3.0 2,-0.0 5,-0.2 -0.977 61.1-151.4-145.5 125.6 4.9 -2.2 6.6 14 395 A E H > S+ 0 0 99 -2,-0.3 4,-2.6 2,-0.2 5,-0.3 0.939 97.5 47.1 -62.7 -50.7 4.3 -5.2 4.4 15 396 A P H > S+ 0 0 79 0, 0.0 4,-1.0 0, 0.0 -1,-0.2 0.934 120.9 38.7 -59.5 -45.1 2.1 -7.2 6.9 16 397 A K H > S+ 0 0 128 1,-0.2 4,-1.8 2,-0.2 3,-0.2 0.924 116.9 50.0 -68.2 -49.5 -0.1 -4.2 7.6 17 398 A b H < S+ 0 0 0 -4,-3.0 6,-0.2 1,-0.2 -3,-0.2 0.876 106.1 54.8 -59.9 -43.9 -0.1 -2.8 4.0 18 399 A S H < S+ 0 0 83 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.858 116.7 38.1 -61.2 -34.5 -1.2 -6.1 2.5 19 400 A E H < S+ 0 0 169 -4,-1.0 -1,-0.2 -5,-0.3 -2,-0.2 0.684 94.5 110.4 -86.7 -23.5 -4.2 -6.3 4.8 20 401 A E S >< S- 0 0 90 -4,-1.8 3,-1.7 1,-0.1 2,-0.2 -0.241 84.6 -94.3 -56.2 140.7 -4.8 -2.5 4.6 21 402 A K T 3 S- 0 0 147 1,-0.3 -1,-0.1 3,-0.0 3,-0.1 -0.394 103.2 -10.8 -61.7 124.7 -8.0 -1.5 2.7 22 403 A I T 3 S+ 0 0 59 1,-0.2 17,-2.0 -2,-0.2 18,-0.5 0.579 111.6 117.6 54.5 24.0 -7.2 -0.8 -0.9 23 404 A a E < -A 38 0A 7 -3,-1.7 2,-0.3 -6,-0.2 -1,-0.2 -0.798 41.3-175.7-113.0 151.4 -3.5 -0.8 -0.1 24 405 A S E -A 37 0A 18 13,-2.1 13,-1.5 -2,-0.3 2,-0.7 -0.993 29.5-107.6-149.0 143.3 -1.0 -3.3 -1.6 25 406 A W E -A 36 0A 51 -2,-0.3 2,-1.4 11,-0.2 11,-0.2 -0.673 16.3-149.0 -80.4 119.4 2.7 -3.9 -1.0 26 407 A H - 0 0 64 9,-3.3 10,-0.1 -2,-0.7 -1,-0.1 -0.686 21.5-174.4 -80.9 85.2 5.1 -2.8 -3.7 27 408 A K + 0 0 162 -2,-1.4 2,-0.3 8,-0.1 -1,-0.2 0.988 68.5 39.6 -54.5 -63.9 7.6 -5.6 -3.0 28 409 A E S S- 0 0 174 -3,-0.2 2,-0.4 7,-0.1 -1,-0.0 -0.672 80.6-174.7 -85.4 135.4 10.3 -4.5 -5.4 29 410 A V - 0 0 51 -2,-0.3 2,-0.1 4,-0.1 6,-0.1 -0.992 23.5-132.7-139.0 137.3 10.8 -0.8 -5.5 30 411 A K > - 0 0 151 -2,-0.4 3,-2.5 1,-0.1 2,-0.7 -0.482 49.9 -87.8 -77.5 148.3 12.9 1.7 -7.6 31 412 A A T 3 S+ 0 0 111 1,-0.3 -1,-0.1 -2,-0.1 3,-0.1 -0.460 123.2 30.2 -61.5 102.9 14.8 4.3 -5.6 32 413 A G T 3 S+ 0 0 73 -2,-0.7 -1,-0.3 1,-0.5 -2,-0.0 -0.039 101.0 95.4 134.3 -31.5 12.1 7.0 -5.4 33 414 A E S < S- 0 0 83 -3,-2.5 -1,-0.5 1,-0.0 2,-0.4 0.006 70.9-116.7 -74.7-170.4 9.0 4.8 -5.5 34 415 A K - 0 0 116 1,-0.2 -4,-0.1 -3,-0.1 -8,-0.1 -0.995 6.9-153.4-137.3 138.0 7.0 3.6 -2.4 35 416 A N S S+ 0 0 47 -2,-0.4 -9,-3.3 1,-0.2 2,-0.6 0.984 89.5 50.3 -73.0 -61.7 6.4 0.1 -1.1 36 417 A b E S+A 25 0A 3 -27,-0.2 2,-0.3 -11,-0.2 -11,-0.2 -0.666 85.6 133.9 -80.6 117.2 3.1 0.6 0.6 37 418 A Q E -A 24 0A 47 -13,-1.5 -13,-2.1 -2,-0.6 2,-0.3 -0.960 59.4 -61.3-159.2 169.2 0.9 2.4 -1.8 38 419 A F E -A 23 0A 62 -2,-0.3 -15,-0.2 -15,-0.2 3,-0.1 -0.443 30.9-162.7 -61.9 124.1 -2.5 2.6 -3.5 39 420 A N > - 0 0 23 -17,-2.0 3,-0.8 1,-0.3 -1,-0.2 0.462 27.0-155.1 -87.3 0.3 -3.4 -0.6 -5.4 40 421 A S G > - 0 0 59 -18,-0.5 3,-0.8 1,-0.2 4,-0.4 -0.397 68.9 -7.0 64.2-132.9 -6.1 1.4 -7.3 41 422 A T G 3 S+ 0 0 120 1,-0.2 -1,-0.2 2,-0.1 -3,-0.0 0.064 110.9 99.3 -85.6 30.8 -8.9 -0.9 -8.6 42 423 A K G < S+ 0 0 139 -3,-0.8 -1,-0.2 -20,-0.1 -2,-0.1 0.896 80.1 49.0 -78.3 -44.1 -6.9 -4.0 -7.5 43 424 A A S < S+ 0 0 39 -3,-0.8 -2,-0.1 -21,-0.1 3,-0.1 0.982 70.9 174.4 -60.5 -59.1 -8.8 -4.4 -4.3 44 425 A S + 0 0 98 -4,-0.4 2,-0.4 1,-0.2 -3,-0.1 0.926 36.6 124.6 50.6 49.1 -12.3 -4.2 -5.8 45 426 A K 0 0 164 0, 0.0 -1,-0.2 0, 0.0 -23,-0.1 -0.989 360.0 360.0-144.5 129.9 -13.9 -5.1 -2.5 46 427 A S 0 0 167 -2,-0.4 0, 0.0 -3,-0.1 0, 0.0 -0.954 360.0 360.0-142.2 360.0 -16.5 -3.2 -0.4