==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN, IMMUNE SYSTEM 12-OCT-07 2JWH . COMPND 2 MOLECULE: VARIANT SURFACE GLYCOPROTEIN ILTAT 1.24; . SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; . AUTHOR N.G.JONES,D.NIETLISPACH,R.SHARMA,D.F.BURKE,I.EYRES,M.MUES, . 48 1 2 2 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4624.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 16 33.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 6.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 4.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 421 A G 0 0 125 0, 0.0 3,-0.4 0, 0.0 4,-0.4 0.000 360.0 360.0 360.0-139.9 -6.9 -27.4 -30.1 2 422 A T + 0 0 142 1,-0.2 0, 0.0 2,-0.1 0, 0.0 -0.463 360.0 108.0 -67.6 123.6 -10.3 -26.7 -31.6 3 423 A K S S- 0 0 198 -2,-0.2 -1,-0.2 0, 0.0 0, 0.0 0.248 98.3 -10.1-167.1 -31.9 -13.0 -28.4 -29.5 4 424 A A - 0 0 45 -3,-0.4 -2,-0.1 3,-0.0 0, 0.0 0.415 68.6-145.0-149.5 -35.3 -14.9 -25.7 -27.7 5 425 A S S S+ 0 0 108 -4,-0.4 -3,-0.1 1,-0.1 0, 0.0 0.812 96.3 37.9 59.2 37.4 -13.0 -22.4 -28.2 6 426 A K S S- 0 0 170 3,-0.1 -1,-0.1 0, 0.0 0, 0.0 0.199 98.2-135.2-175.4 -34.5 -14.0 -21.3 -24.7 7 427 A S - 0 0 67 1,-0.1 -3,-0.0 4,-0.0 0, 0.0 0.594 18.0-111.0 68.6 136.0 -13.8 -24.3 -22.4 8 428 A G S S+ 0 0 88 2,-0.0 -1,-0.1 3,-0.0 -4,-0.0 0.965 105.7 51.6 -62.0 -48.6 -16.5 -25.1 -19.9 9 429 A V S S- 0 0 100 1,-0.1 -3,-0.1 2,-0.0 0, 0.0 -0.578 87.0-128.0 -88.6 147.1 -14.2 -24.4 -17.0 10 430 A P - 0 0 115 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.810 29.1-147.7 -62.5 -31.6 -12.3 -21.0 -16.9 11 431 A V - 0 0 103 1,-0.2 2,-0.2 2,-0.1 -2,-0.0 0.965 16.9-157.1 60.3 52.4 -9.0 -22.9 -16.3 12 432 A T - 0 0 87 1,-0.2 -1,-0.2 3,-0.0 3,-0.1 -0.473 14.3-167.9 -65.0 126.7 -7.6 -20.0 -14.2 13 433 A Q - 0 0 185 1,-0.3 2,-0.3 -2,-0.2 -1,-0.2 0.939 63.3 -33.3 -79.6 -53.4 -3.8 -20.1 -14.2 14 434 A T - 0 0 103 2,-0.0 -1,-0.3 3,-0.0 0, 0.0 -0.918 42.3-178.4-171.6 141.3 -3.1 -17.7 -11.4 15 435 A Q - 0 0 151 -2,-0.3 -3,-0.0 -3,-0.1 -1,-0.0 -0.217 63.8 -92.6-143.0 47.8 -4.6 -14.5 -9.9 16 436 A T > + 0 0 92 1,-0.1 5,-0.5 2,-0.1 -2,-0.0 0.855 66.4 160.2 43.0 48.1 -2.3 -13.5 -7.0 17 437 A A T 5 + 0 0 96 1,-0.2 -1,-0.1 3,-0.1 -3,-0.0 0.771 66.9 58.5 -67.8 -29.1 -4.4 -15.5 -4.6 18 438 A G T 5S+ 0 0 76 2,-0.1 -1,-0.2 3,-0.0 -2,-0.1 0.919 94.2 75.1 -68.3 -44.0 -1.5 -15.7 -2.1 19 439 A A T 5S- 0 0 36 1,-0.1 2,-1.0 2,-0.1 3,-0.0 -0.303 95.2-112.9 -66.9 153.4 -1.1 -11.9 -1.8 20 440 A D T 5 - 0 0 143 1,-0.2 2,-3.1 -2,-0.0 4,-0.2 -0.078 54.1-105.4 -78.1 36.9 -3.6 -9.9 0.2 21 441 A T S > - 0 0 31 -2,-0.3 3,-2.1 1,-0.2 4,-0.5 -0.564 15.7-176.3 -75.5 85.0 -0.8 -5.1 1.0 24 444 A E T 34 + 0 0 145 -2,-1.8 -1,-0.2 1,-0.3 23,-0.0 0.232 68.9 86.8 -76.1 28.1 -1.4 -1.4 1.9 25 445 A K T 34 S+ 0 0 173 1,-0.1 -1,-0.3 3,-0.1 4,-0.1 0.749 88.6 50.5 -89.4 -25.5 1.0 -1.9 4.8 26 446 A a T X4 S+ 0 0 6 -3,-2.1 3,-2.3 2,-0.1 20,-0.3 0.906 91.7 87.9 -73.3 -45.1 3.8 -1.1 2.3 27 447 A K T 3< S+ 0 0 121 -4,-0.5 20,-0.1 1,-0.3 3,-0.1 -0.394 93.4 27.2 -60.7 118.2 2.0 2.0 1.2 28 448 A G T 3 S+ 0 0 76 1,-0.4 -1,-0.3 18,-0.3 2,-0.2 0.056 91.0 123.7 116.5 -25.9 3.2 4.8 3.4 29 449 A K < - 0 0 82 -3,-2.3 17,-0.5 17,-0.1 -1,-0.4 -0.450 57.5-127.7 -69.3 144.0 6.5 3.4 4.4 30 450 A G > - 0 0 28 -2,-0.2 4,-3.1 -3,-0.1 -1,-0.1 -0.194 37.1 -90.8 -77.8 176.1 9.7 5.3 3.8 31 451 A E T 4 S+ 0 0 147 1,-0.2 -1,-0.1 2,-0.2 -2,-0.1 0.903 129.4 47.2 -56.3 -44.3 12.7 3.9 1.8 32 452 A K T 4 S+ 0 0 184 1,-0.2 -1,-0.2 3,-0.1 -3,-0.0 0.883 115.4 45.5 -64.9 -40.6 14.2 2.6 5.1 33 453 A D T 4 S+ 0 0 85 2,-0.1 2,-0.5 -7,-0.0 -2,-0.2 0.887 92.6 91.2 -69.3 -43.6 10.9 1.0 6.2 34 454 A b < - 0 0 8 -4,-3.1 2,-0.4 1,-0.1 7,-0.1 -0.433 69.7-150.2 -60.9 111.3 10.1 -0.5 2.9 35 455 A K > - 0 0 135 -2,-0.5 4,-3.4 1,-0.2 3,-0.2 -0.702 5.3-146.0 -82.9 127.0 11.5 -4.0 2.8 36 456 A S T 4 S+ 0 0 93 -2,-0.4 -1,-0.2 2,-0.2 -2,-0.0 0.941 98.5 49.5 -61.4 -49.0 12.4 -5.0 -0.7 37 457 A P T 4 S+ 0 0 123 0, 0.0 -1,-0.2 0, 0.0 3,-0.1 0.790 121.2 39.3 -58.4 -28.3 11.5 -8.7 -0.4 38 458 A D T 4 S+ 0 0 104 1,-0.3 2,-0.3 -3,-0.2 -2,-0.2 0.833 128.4 13.1 -86.9 -45.7 8.2 -7.6 1.1 39 459 A a S < S- 0 0 8 -4,-3.4 2,-0.7 -13,-0.1 -1,-0.3 -0.992 72.1-116.7-140.8 146.6 7.3 -4.6 -1.1 40 460 A K E -A 47 0A 121 7,-2.1 7,-1.1 -2,-0.3 2,-0.9 -0.757 24.6-149.9 -88.7 112.9 8.5 -3.1 -4.4 41 461 A W E +A 46 0A 77 -2,-0.7 2,-0.4 5,-0.2 5,-0.2 -0.733 32.9 157.5 -83.9 106.9 10.1 0.4 -3.8 42 462 A E - 0 0 81 3,-2.4 3,-0.2 -2,-0.9 -2,-0.0 -0.991 57.6 -2.5-138.4 132.3 9.4 2.3 -7.0 43 463 A G S S- 0 0 82 -2,-0.4 -1,-0.1 1,-0.2 3,-0.1 0.883 127.3 -55.8 61.2 41.4 9.3 6.0 -7.8 44 464 A G S S+ 0 0 55 1,-0.2 2,-0.3 -3,-0.1 -1,-0.2 0.863 118.4 106.9 61.1 36.3 9.8 7.0 -4.2 45 465 A T - 0 0 55 -3,-0.2 -3,-2.4 2,-0.1 2,-0.4 -0.968 64.9-137.3-150.0 129.2 6.8 4.9 -3.1 46 466 A b E +A 41 0A 1 -17,-0.5 2,-0.3 -2,-0.3 -18,-0.3 -0.740 38.5 163.1 -87.5 126.5 6.5 1.6 -1.3 47 467 A K E A 40 0A 83 -7,-1.1 -7,-2.1 -2,-0.4 -23,-0.1 -0.989 360.0 360.0-151.4 142.6 3.9 -0.6 -2.9 48 468 A D 0 0 96 -2,-0.3 -1,-0.1 -25,-0.2 -24,-0.1 0.889 360.0 360.0 -90.2 360.0 2.8 -4.2 -3.0