==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RECOMBINATION 17-OCT-07 2JWO . COMPND 2 MOLECULE: V(D)J RECOMBINATION-ACTIVATING PROTEIN 2; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR D.IVANOV,S.G.HYBERTS,Z.SUN,G.WAGNER . 82 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6534.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 30 36.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 3.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 12.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 11.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 7.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 406 A G 0 0 124 0, 0.0 2,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 83.6 67.3 -20.9 7.0 2 407 A P - 0 0 107 0, 0.0 2,-0.6 0, 0.0 0, 0.0 -0.511 360.0-119.9 -72.9 133.4 67.4 -17.8 4.7 3 408 A L - 0 0 148 -2,-0.2 31,-0.0 1,-0.1 0, 0.0 -0.617 28.2-147.5 -76.9 118.1 64.7 -17.9 2.0 4 409 A G - 0 0 59 -2,-0.6 3,-0.1 1,-0.1 -1,-0.1 0.313 27.9 -97.4 -63.6-154.7 66.5 -17.9 -1.4 5 410 A S S S+ 0 0 56 1,-0.1 -1,-0.1 4,-0.1 4,-0.1 -0.339 72.8 129.3-128.9 54.8 64.8 -16.1 -4.4 6 411 A P S S+ 0 0 101 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 0.945 76.5 23.6 -73.4 -50.4 63.1 -19.0 -6.3 7 412 A E S S- 0 0 126 1,-0.3 0, 0.0 -3,-0.1 0, 0.0 -0.057 110.8 -54.9 -97.6-156.5 59.6 -17.3 -6.6 8 413 A F + 0 0 209 1,-0.1 -1,-0.3 2,-0.1 2,-0.3 -0.103 65.3 136.8 -73.7-179.9 58.7 -13.6 -6.4 9 414 A G S S- 0 0 48 -3,-0.1 -1,-0.1 -4,-0.1 -4,-0.1 -0.898 71.4 -35.5 174.0-142.7 59.6 -11.3 -3.5 10 415 A Y S S+ 0 0 86 -2,-0.3 2,-2.0 1,-0.2 4,-0.2 0.294 96.0 109.9 -91.6 13.0 61.0 -7.7 -3.0 11 416 A W + 0 0 59 2,-0.1 -1,-0.2 10,-0.0 2,-0.1 -0.329 55.0 112.1 -83.2 58.5 63.1 -8.0 -6.2 12 417 A I S S- 0 0 78 -2,-2.0 2,-0.7 -4,-0.0 3,-0.1 -0.318 80.5 -82.6-113.7-160.9 60.9 -5.5 -8.1 13 418 A T - 0 0 112 1,-0.2 -2,-0.1 -2,-0.1 4,-0.0 -0.737 33.2-177.1-111.7 86.4 61.3 -2.0 -9.4 14 419 A C S S- 0 0 9 -2,-0.7 -1,-0.2 -4,-0.2 -3,-0.0 0.795 77.7 -4.2 -51.4 -25.4 60.7 0.5 -6.6 15 420 A C S > S- 0 0 24 -3,-0.1 3,-0.8 1,-0.0 35,-0.0 -0.857 85.9 -87.5-152.4-173.7 61.2 3.2 -9.2 16 421 A P T 3 S+ 0 0 108 0, 0.0 -2,-0.1 0, 0.0 -1,-0.0 0.719 127.4 38.1 -78.6 -20.7 62.1 3.7 -12.9 17 422 A T T 3 S+ 0 0 126 36,-0.0 2,-0.0 -4,-0.0 -3,-0.0 -0.128 84.4 149.9-119.8 37.5 65.9 3.8 -12.0 18 423 A C < - 0 0 28 -3,-0.8 -5,-0.0 1,-0.1 36,-0.0 -0.364 23.8-178.4 -69.7 150.3 65.9 1.1 -9.3 19 424 A D + 0 0 122 -2,-0.0 2,-0.3 2,-0.0 -1,-0.1 0.404 37.4 125.4-128.1 -3.8 69.2 -0.9 -8.9 20 425 A V + 0 0 10 -8,-0.1 2,-0.3 3,-0.0 -6,-0.1 -0.416 30.0 147.4 -61.8 119.5 68.2 -3.4 -6.1 21 426 A D >> - 0 0 75 -2,-0.3 3,-3.0 1,-0.1 4,-1.1 -0.864 51.1-140.2-158.2 118.9 68.9 -6.9 -7.5 22 427 A I T 34 S+ 0 0 75 1,-0.3 -1,-0.1 -2,-0.3 -2,-0.0 0.812 99.3 78.8 -51.1 -26.0 70.1 -10.0 -5.6 23 428 A N T 34 S- 0 0 158 1,-0.3 -1,-0.3 -3,-0.1 -3,-0.0 0.833 125.9 -1.3 -53.4 -26.7 72.3 -10.7 -8.7 24 429 A T T <4 S+ 0 0 108 -3,-3.0 -2,-0.3 2,-0.0 -1,-0.3 0.138 114.8 105.2-149.0 19.7 74.5 -8.0 -7.1 25 430 A W < - 0 0 35 -4,-1.1 -5,-0.0 -5,-0.1 -3,-0.0 -0.624 40.9-179.6-102.5 165.6 72.6 -6.9 -3.9 26 431 A V - 0 0 87 -2,-0.2 2,-1.0 9,-0.0 8,-0.1 -0.973 43.7 -75.3-155.7 166.7 73.4 -7.8 -0.3 27 432 A P + 0 0 54 0, 0.0 -2,-0.0 0, 0.0 7,-0.0 -0.532 52.0 162.9 -70.1 101.6 72.1 -7.1 3.3 28 433 A F + 0 0 140 -2,-1.0 30,-0.1 7,-0.1 2,-0.0 0.850 51.0 80.0 -89.6 -38.4 73.2 -3.5 3.9 29 434 A Y S S- 0 0 13 6,-0.2 3,-0.4 1,-0.1 6,-0.1 -0.369 76.5-137.5 -68.3 148.1 70.9 -2.8 6.9 30 435 A S S S+ 0 0 111 1,-0.2 -1,-0.1 -2,-0.0 -2,-0.0 0.794 104.5 51.4 -77.9 -26.3 72.0 -4.1 10.3 31 436 A T S S+ 0 0 91 2,-0.0 -1,-0.2 6,-0.0 2,-0.2 0.531 101.6 77.9 -87.6 -3.8 68.5 -5.3 11.2 32 437 A E - 0 0 33 -3,-0.4 5,-0.0 1,-0.1 0, 0.0 -0.625 59.1-162.3-101.6 163.8 68.1 -7.2 7.9 33 438 A L S S- 0 0 137 -2,-0.2 -1,-0.1 2,-0.1 -2,-0.0 0.746 80.3 -27.4-112.2 -41.8 69.6 -10.6 6.9 34 439 A N S S+ 0 0 82 -8,-0.1 -9,-0.1 1,-0.1 -12,-0.0 0.069 111.5 83.2-167.9 38.4 69.4 -10.7 3.1 35 440 A K S S- 0 0 115 -6,-0.1 2,-0.4 -9,-0.0 -6,-0.2 -0.997 76.9-104.8-150.6 145.3 66.5 -8.6 1.9 36 441 A P - 0 0 3 0, 0.0 2,-2.5 0, 0.0 -11,-0.0 -0.523 34.5-123.9 -70.7 124.0 65.9 -4.9 1.1 37 442 A A - 0 0 16 -2,-0.4 14,-0.1 13,-0.0 12,-0.1 -0.395 37.2-158.6 -68.1 79.5 63.9 -3.2 3.9 38 443 A M - 0 0 15 -2,-2.5 2,-0.3 12,-0.2 12,-0.3 -0.133 1.6-146.2 -57.1 158.1 61.1 -2.0 1.5 39 444 A I E -A 49 0A 5 10,-2.9 10,-2.2 11,-0.0 2,-0.4 -0.938 5.2-130.5-128.5 151.5 59.0 0.9 2.6 40 445 A Y E -A 48 0A 103 -2,-0.3 8,-0.2 8,-0.2 2,-0.2 -0.848 18.5-140.8-104.5 136.3 55.3 1.8 2.0 41 446 A C - 0 0 3 6,-2.2 31,-0.2 -2,-0.4 30,-0.1 -0.524 6.3-158.5 -89.7 160.7 54.2 5.2 0.8 42 447 A S + 0 0 62 29,-0.6 2,-0.7 -2,-0.2 4,-0.1 -0.043 55.6 111.0-128.0 32.6 51.0 7.0 2.0 43 448 A H S S- 0 0 77 2,-0.2 2,-1.3 4,-0.1 -2,-0.1 -0.845 98.6 -64.1-111.7 100.3 50.4 9.5 -0.8 44 449 A G S S+ 0 0 83 -2,-0.7 2,-1.2 1,-0.1 -3,-0.0 -0.413 134.5 36.9 62.9 -95.3 47.3 8.6 -2.8 45 450 A D S S- 0 0 136 -2,-1.3 2,-0.3 -3,-0.0 -2,-0.2 -0.695 86.0-150.6 -90.4 94.1 48.5 5.3 -4.2 46 451 A G + 0 0 50 -2,-1.2 2,-0.2 -4,-0.1 -4,-0.1 -0.448 26.7 171.2 -64.4 125.2 50.5 3.7 -1.4 47 452 A H - 0 0 51 -2,-0.3 -6,-2.2 -4,-0.0 2,-0.4 -0.766 32.5-109.3-129.3 176.3 53.2 1.5 -3.0 48 453 A W E +A 40 0A 126 -2,-0.2 2,-0.3 -8,-0.2 -8,-0.2 -0.908 40.6 158.9-111.3 133.6 56.2 -0.5 -1.8 49 454 A V E -A 39 0A 1 -10,-2.2 -10,-2.9 -2,-0.4 -36,-0.0 -0.999 42.3 -95.9-151.4 150.7 59.8 0.6 -2.7 50 455 A H - 0 0 0 -2,-0.3 -12,-0.2 -12,-0.3 4,-0.1 -0.136 25.9-143.8 -60.4 163.1 63.4 0.0 -1.4 51 456 A A S > >S+ 0 0 0 2,-0.1 3,-2.2 -14,-0.1 5,-0.6 0.878 95.2 50.3 -97.1 -52.4 64.8 2.6 1.0 52 457 A Q G > 5S+ 0 0 68 1,-0.3 3,-2.0 3,-0.2 -1,-0.1 0.803 96.5 74.8 -57.9 -25.0 68.5 2.8 0.1 53 458 A C G 3 5S+ 0 0 40 1,-0.3 -1,-0.3 2,-0.1 -2,-0.1 0.781 98.3 46.2 -60.0 -22.4 67.3 3.2 -3.6 54 459 A M G < 5S- 0 0 23 -3,-2.2 -1,-0.3 -4,-0.1 -2,-0.2 -0.014 124.0-101.5-109.1 30.9 66.4 6.8 -2.6 55 460 A D T < 5 + 0 0 150 -3,-2.0 2,-0.2 1,-0.1 -3,-0.2 0.950 69.2 160.5 52.2 51.9 69.7 7.6 -0.8 56 461 A L < - 0 0 43 -5,-0.6 2,-0.3 1,-0.0 -1,-0.1 -0.592 39.6-112.5-100.6 166.0 68.0 7.1 2.7 57 462 A E > - 0 0 136 -2,-0.2 4,-1.6 1,-0.1 5,-0.2 -0.729 14.2-131.2 -98.3 147.8 69.8 6.4 6.0 58 463 A E H > S+ 0 0 49 -2,-0.3 4,-1.7 2,-0.2 5,-0.1 0.907 107.8 52.4 -63.1 -38.9 69.5 3.1 7.9 59 464 A R H >> S+ 0 0 176 2,-0.2 4,-2.8 1,-0.2 3,-0.7 0.986 105.0 52.3 -61.9 -57.5 68.6 5.0 11.1 60 465 A T H 3> S+ 0 0 58 1,-0.3 4,-3.2 2,-0.2 5,-0.2 0.892 108.3 53.6 -47.2 -40.5 65.8 7.1 9.7 61 466 A L H 3X S+ 0 0 14 -4,-1.6 4,-0.8 2,-0.2 -1,-0.3 0.917 109.8 47.5 -63.6 -38.6 64.3 3.8 8.4 62 467 A I H X< S+ 0 0 74 -4,-1.7 3,-0.8 -3,-0.7 -2,-0.2 0.969 113.7 46.8 -66.1 -49.7 64.4 2.4 11.9 63 468 A H H >< S+ 0 0 121 -4,-2.8 3,-2.1 1,-0.3 4,-0.2 0.960 112.5 49.3 -56.5 -50.5 62.9 5.5 13.4 64 469 A L H >< S+ 0 0 31 -4,-3.2 3,-0.6 -5,-0.3 -1,-0.3 0.714 103.5 63.8 -63.7 -15.9 60.2 5.5 10.7 65 470 A S T << S+ 0 0 86 -4,-0.8 -1,-0.3 -3,-0.8 -2,-0.2 0.348 71.7 98.4 -89.8 9.2 59.6 1.8 11.6 66 471 A E T < S- 0 0 128 -3,-2.1 2,-0.3 1,-0.1 -1,-0.2 0.821 96.8-113.7 -66.0 -27.1 58.5 2.8 15.1 67 472 A G S < S+ 0 0 54 -3,-0.6 2,-1.0 -4,-0.2 -1,-0.1 -0.701 94.8 64.2 132.3 -84.4 54.9 2.4 13.9 68 473 A S S S+ 0 0 94 -2,-0.3 2,-0.2 2,-0.1 -2,-0.1 -0.619 71.6 117.7 -78.4 103.2 53.0 5.8 14.0 69 474 A N - 0 0 56 -2,-1.0 2,-2.2 -5,-0.1 -2,-0.1 -0.798 68.8-119.8-168.3 121.9 54.8 7.9 11.4 70 475 A K - 0 0 158 -2,-0.2 2,-0.2 2,-0.0 -28,-0.1 -0.377 41.7-166.5 -64.8 83.1 53.7 9.5 8.1 71 476 A Y - 0 0 9 -2,-2.2 -29,-0.6 -7,-0.1 2,-0.4 -0.511 6.7-173.6 -74.6 139.1 56.2 7.6 5.9 72 477 A Y - 0 0 87 -2,-0.2 -31,-0.1 -31,-0.2 5,-0.1 -0.993 19.6-128.5-136.8 132.9 56.6 9.0 2.4 73 478 A C - 0 0 4 -2,-0.4 -1,-0.1 3,-0.1 -22,-0.1 0.223 36.6 -99.0 -60.1-164.6 58.6 7.5 -0.6 74 479 A N S > S+ 0 0 81 1,-0.2 3,-0.9 2,-0.1 4,-0.4 0.823 119.3 53.6 -91.5 -35.1 61.1 9.7 -2.5 75 480 A E T 3 S+ 0 0 110 1,-0.2 -1,-0.2 2,-0.1 -2,-0.0 0.476 116.4 40.8 -79.3 1.7 58.9 10.6 -5.5 76 481 A H T 3 S+ 0 0 50 2,-0.1 -1,-0.2 3,-0.1 -2,-0.1 0.068 88.9 88.2-135.1 26.3 56.1 11.8 -3.1 77 482 A V S < S+ 0 0 90 -3,-0.9 -2,-0.1 1,-0.1 -3,-0.1 0.766 110.1 6.3 -95.2 -29.1 58.1 13.7 -0.4 78 483 A Q S S- 0 0 156 -4,-0.4 -1,-0.1 0, 0.0 2,-0.1 -0.289 76.6-177.5-149.7 57.5 58.1 17.1 -2.2 79 484 A I + 0 0 114 1,-0.2 -3,-0.1 -3,-0.1 -4,-0.0 -0.364 36.4 111.9 -60.7 131.8 56.0 17.0 -5.3 80 485 A A S S+ 0 0 88 -2,-0.1 -1,-0.2 0, 0.0 0, 0.0 0.061 83.5 4.0-161.8 -75.8 56.2 20.4 -7.1 81 486 A R 0 0 249 0, 0.0 -2,-0.1 0, 0.0 0, 0.0 0.862 360.0 360.0 -95.3 -45.1 57.9 20.6 -10.5 82 487 A A 0 0 152 0, 0.0 -3,-0.0 0, 0.0 0, 0.0 0.187 360.0 360.0-163.5 360.0 58.8 17.0 -11.2