==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 31-OCT-07 2JWZ . COMPND 2 MOLECULE: UBIQUITIN; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR A.HARIRINIA,R.VERMA,N.PUROHIT,M.TWAROG,R.DESHAIES,D.BOLON, . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5335.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 67.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 6.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 18.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 14.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 100 0, 0.0 2,-0.3 0, 0.0 17,-0.1 0.000 360.0 360.0 360.0-134.3 12.9 3.5 1.2 2 2 A Q + 0 0 77 14,-0.3 62,-1.8 2,-0.0 63,-0.8 -0.885 360.0 168.5 178.3 125.5 10.0 5.0 -1.1 3 3 A I E -Ab 15 65A 13 12,-1.6 12,-1.5 -2,-0.3 2,-0.5 -0.997 19.4-145.6-145.7 144.9 6.7 3.9 -2.7 4 4 A F E -Ab 14 66A 70 61,-1.8 63,-1.1 -2,-0.3 2,-0.4 -0.949 11.7-171.8-122.4 130.9 3.9 5.8 -4.4 5 5 A V E -Ab 13 67A 14 8,-0.9 8,-1.8 -2,-0.5 2,-0.3 -0.954 15.2-143.7-117.2 125.3 0.2 4.9 -4.3 6 6 A K E -Ab 12 68A 93 61,-0.8 63,-0.8 -2,-0.4 6,-0.3 -0.683 24.0-139.9 -82.7 145.8 -2.6 6.6 -6.4 7 7 A T > - 0 0 20 4,-1.7 3,-1.8 -2,-0.3 4,-0.1 -0.584 23.1-103.5-103.1 168.0 -5.9 7.0 -4.6 8 8 A L T 3 S+ 0 0 119 1,-0.3 -1,-0.1 -2,-0.2 -2,-0.0 0.623 118.8 57.0 -65.0 -13.6 -9.5 6.6 -5.7 9 9 A T T 3 S- 0 0 139 2,-0.2 -1,-0.3 0, 0.0 3,-0.1 0.382 124.3 -99.0 -98.1 5.1 -10.0 10.4 -5.9 10 10 A G S < S+ 0 0 74 -3,-1.8 2,-0.4 1,-0.3 -2,-0.1 0.759 85.4 123.7 85.7 26.8 -7.1 10.9 -8.3 11 11 A K - 0 0 102 -4,-0.1 -4,-1.7 2,-0.0 2,-0.3 -0.981 41.6-163.1-120.8 127.6 -4.5 12.0 -5.8 12 12 A T E -A 6 0A 57 -2,-0.4 2,-0.3 -6,-0.3 -6,-0.2 -0.841 8.0-150.8-108.5 145.9 -1.2 10.1 -5.3 13 13 A I E -A 5 0A 12 -8,-1.8 -8,-0.9 -2,-0.3 2,-0.6 -0.846 13.0-128.0-118.7 155.7 1.1 10.4 -2.2 14 14 A T E -A 4 0A 92 -2,-0.3 2,-0.3 -10,-0.2 -10,-0.2 -0.873 33.9-173.2 -99.1 118.6 4.9 10.1 -1.7 15 15 A L E -A 3 0A 27 -12,-1.5 -12,-1.6 -2,-0.6 2,-0.6 -0.899 24.0-136.3-120.2 151.1 5.7 7.7 1.2 16 16 A E + 0 0 100 -2,-0.3 -14,-0.3 -14,-0.2 2,-0.2 -0.871 36.2 173.9-100.1 118.7 9.0 6.7 3.0 17 17 A V - 0 0 7 -2,-0.6 2,-0.3 39,-0.0 46,-0.0 -0.734 20.7-153.2-127.2 167.3 9.2 2.8 3.5 18 18 A E > - 0 0 72 -2,-0.2 3,-1.9 3,-0.1 38,-0.3 -0.959 26.7-124.1-144.6 134.6 11.6 0.2 4.8 19 19 A S T 3 S+ 0 0 52 -2,-0.3 38,-1.0 1,-0.3 39,-0.2 0.656 112.1 49.8 -44.0 -22.9 12.1 -3.5 4.0 20 20 A S T 3 S+ 0 0 96 36,-0.1 -1,-0.3 35,-0.1 2,-0.1 0.726 88.2 94.1 -94.6 -23.2 11.7 -4.4 7.7 21 21 A D S < S- 0 0 37 -3,-1.9 35,-0.8 1,-0.1 2,-0.2 -0.432 81.5-112.3 -71.8 145.0 8.5 -2.4 8.5 22 22 A T B > -E 55 0B 50 33,-0.2 4,-1.3 1,-0.1 3,-0.5 -0.494 19.8-121.4 -74.9 143.7 5.2 -4.3 8.3 23 23 A I H > S+ 0 0 5 31,-1.3 4,-2.4 28,-0.4 5,-0.2 0.826 111.2 61.9 -56.2 -32.3 2.8 -3.3 5.5 24 24 A D H > S+ 0 0 60 28,-2.1 4,-1.5 1,-0.2 -1,-0.2 0.943 100.3 53.0 -60.6 -45.7 0.1 -2.6 8.2 25 25 A N H > S+ 0 0 68 -3,-0.5 4,-1.7 27,-0.3 3,-0.3 0.917 111.8 44.8 -54.4 -44.4 2.2 0.2 9.7 26 26 A V H X S+ 0 0 9 -4,-1.3 4,-1.9 1,-0.2 -1,-0.2 0.912 108.2 56.4 -71.3 -37.3 2.7 1.9 6.3 27 27 A K H X S+ 0 0 31 -4,-2.4 4,-1.9 1,-0.2 -1,-0.2 0.789 110.1 48.5 -61.7 -26.9 -1.0 1.6 5.4 28 28 A S H X S+ 0 0 38 -4,-1.5 4,-2.4 -3,-0.3 -1,-0.2 0.839 102.3 57.7 -84.3 -33.3 -1.7 3.5 8.6 29 29 A K H X S+ 0 0 83 -4,-1.7 4,-1.8 1,-0.2 -2,-0.2 0.914 112.9 44.8 -62.5 -33.3 0.8 6.3 8.1 30 30 A I H X>S+ 0 0 11 -4,-1.9 4,-2.7 2,-0.2 5,-1.4 0.945 105.4 58.5 -73.1 -48.2 -1.1 6.9 4.9 31 31 A Q H X5S+ 0 0 67 -4,-1.9 4,-0.5 1,-0.2 -2,-0.2 0.916 110.6 45.6 -46.5 -44.7 -4.5 6.6 6.6 32 32 A D H <5S+ 0 0 134 -4,-2.4 -1,-0.2 2,-0.1 -2,-0.2 0.922 118.0 43.8 -62.4 -43.3 -3.4 9.5 8.9 33 33 A K H <5S+ 0 0 142 -4,-1.8 -2,-0.2 -5,-0.2 -3,-0.2 0.979 139.1 2.7 -69.6 -59.0 -2.1 11.6 6.0 34 34 A E H <5S- 0 0 89 -4,-2.7 -3,-0.2 2,-0.1 -2,-0.1 0.654 95.8-120.1-106.5 -18.5 -4.9 11.2 3.3 35 35 A G << + 0 0 32 -5,-1.4 -4,-0.2 -4,-0.5 -3,-0.1 0.689 47.0 162.0 94.6 16.0 -7.4 9.1 5.3 36 36 A I - 0 0 21 -6,-0.2 -1,-0.2 -9,-0.1 5,-0.1 -0.611 47.1-117.2 -76.3 121.0 -7.9 5.8 3.2 37 37 A P > - 0 0 64 0, 0.0 3,-0.7 0, 0.0 -1,-0.1 -0.382 21.0-144.7 -54.7 122.3 -9.5 3.2 5.6 38 38 A P G > S+ 0 0 37 0, 0.0 3,-1.3 0, 0.0 -10,-0.0 0.880 97.0 47.3 -62.4 -41.8 -6.9 0.4 5.9 39 39 A D G 3 S+ 0 0 157 1,-0.3 33,-0.1 3,-0.1 -3,-0.0 0.740 116.0 47.1 -71.6 -18.8 -9.3 -2.5 6.1 40 40 A Q G < S+ 0 0 62 -3,-0.7 32,-0.4 31,-0.1 2,-0.4 0.198 103.2 79.7-103.6 16.0 -11.2 -1.0 3.2 41 41 A Q < - 0 0 16 -3,-1.3 2,-0.5 30,-0.2 30,-0.2 -0.979 60.5-161.2-128.0 133.6 -8.0 -0.5 1.1 42 42 A R E -C 70 0A 71 28,-2.4 28,-2.6 -2,-0.4 2,-0.5 -0.940 4.7-155.7-123.1 120.7 -6.0 -3.1 -0.9 43 43 A L E -C 69 0A 22 -2,-0.5 7,-2.4 7,-0.3 2,-0.3 -0.770 19.8-174.4 -93.3 124.0 -2.3 -2.7 -1.9 44 44 A I E -CD 68 49A 42 24,-1.3 24,-1.4 -2,-0.5 2,-0.4 -0.935 17.2-168.5-125.2 147.3 -1.3 -4.8 -5.0 45 45 A F E > S- D 0 48A 52 3,-2.2 3,-1.2 -2,-0.3 22,-0.1 -0.977 75.4 -23.9-134.9 119.3 2.0 -5.5 -6.9 46 46 A A T 3 S- 0 0 83 -2,-0.4 -1,-0.1 1,-0.3 3,-0.1 0.901 127.8 -45.2 45.6 53.5 2.0 -7.3 -10.4 47 47 A G T 3 S+ 0 0 74 1,-0.2 2,-0.4 -3,-0.0 -1,-0.3 0.688 115.5 114.8 69.7 18.1 -1.4 -9.0 -9.9 48 48 A K E < -D 45 0A 120 -3,-1.2 -3,-2.2 0, 0.0 2,-0.4 -0.963 63.3-124.5-123.6 144.3 -0.6 -10.2 -6.3 49 49 A Q E -D 44 0A 64 -2,-0.4 2,-0.4 -5,-0.2 -5,-0.2 -0.689 20.7-132.6 -94.0 132.3 -2.3 -9.1 -3.1 50 50 A L - 0 0 12 -7,-2.4 2,-0.6 -2,-0.4 -7,-0.3 -0.657 12.2-146.5 -86.4 130.7 -0.3 -7.6 -0.2 51 51 A E > - 0 0 110 -2,-0.4 3,-2.8 1,-0.1 -28,-0.4 -0.879 15.1-134.9-103.3 122.5 -0.9 -8.8 3.3 52 52 A D T 3 S+ 0 0 61 -2,-0.6 -28,-2.1 1,-0.3 -27,-0.3 0.720 104.3 59.9 -42.3 -27.6 -0.5 -6.3 6.1 53 53 A G T 3 S+ 0 0 54 -30,-0.2 -1,-0.3 -31,-0.1 2,-0.2 0.663 90.3 74.3 -83.9 -16.5 1.5 -8.9 7.9 54 54 A R S < S- 0 0 140 -3,-2.8 -31,-1.3 -32,-0.1 2,-0.2 -0.660 82.4-117.8 -94.6 156.4 4.4 -9.6 5.4 55 55 A T B >> -E 22 0B 36 -2,-0.2 3,-1.2 -33,-0.2 4,-0.8 -0.621 23.7-113.2 -90.4 155.0 7.3 -7.1 5.0 56 56 A L T 34>S+ 0 0 22 -35,-0.8 5,-0.8 -38,-0.3 -37,-0.1 0.663 111.8 70.4 -59.7 -14.9 7.9 -5.3 1.6 57 57 A S T >45S+ 0 0 68 -38,-1.0 3,-1.1 1,-0.2 -1,-0.3 0.940 92.3 55.1 -67.4 -42.2 11.2 -7.3 1.3 58 58 A D T <45S+ 0 0 110 -3,-1.2 2,-0.3 1,-0.3 -1,-0.2 0.803 101.9 59.1 -63.6 -27.8 9.4 -10.6 0.8 59 59 A Y T 3<5S- 0 0 58 -4,-0.8 2,-2.2 2,-0.1 -1,-0.3 -0.209 103.1-132.4 -95.6 50.7 7.6 -9.0 -2.1 60 60 A N T < 5 + 0 0 93 -3,-1.1 2,-0.2 -2,-0.3 -3,-0.1 0.442 51.0 155.9 13.3 13.4 11.0 -8.2 -3.9 61 61 A I < - 0 0 22 -2,-2.2 2,-0.1 -5,-0.8 -1,-0.1 -0.451 28.3-154.0 -63.1 125.8 9.6 -4.6 -4.5 62 62 A Q > - 0 0 139 -2,-0.2 3,-0.7 1,-0.2 -1,-0.0 -0.445 33.9 -56.6 -97.6 174.6 12.6 -2.3 -5.0 63 63 A K T 3 S+ 0 0 132 1,-0.2 -1,-0.2 -2,-0.1 -60,-0.1 -0.134 120.1 18.4 -49.2 136.6 12.9 1.4 -4.4 64 64 A E T 3 S+ 0 0 152 -62,-1.8 -1,-0.2 1,-0.2 2,-0.2 0.793 84.5 155.8 72.4 32.0 10.5 3.7 -6.2 65 65 A S E < -b 3 0A 28 -63,-0.8 -61,-1.8 -3,-0.7 2,-0.5 -0.600 37.5-131.7 -89.2 150.9 7.8 1.0 -7.0 66 66 A T E -b 4 0A 74 -2,-0.2 2,-0.3 -63,-0.2 -61,-0.2 -0.911 20.7-168.8-107.8 123.1 4.2 1.9 -7.7 67 67 A L E -b 5 0A 10 -63,-1.1 -61,-0.8 -2,-0.5 2,-0.6 -0.783 18.4-131.2-106.3 150.7 1.4 0.0 -5.9 68 68 A H E -bC 6 44A 119 -24,-1.4 -24,-1.3 -2,-0.3 2,-0.5 -0.889 15.9-152.1-102.7 118.7 -2.4 0.2 -6.7 69 69 A S E - C 0 43A 4 -63,-0.8 2,-0.3 -2,-0.6 -26,-0.3 -0.810 21.4-175.0 -90.7 125.0 -4.7 0.7 -3.6 70 70 A V E - C 0 42A 56 -28,-2.6 -28,-2.4 -2,-0.5 2,-0.2 -0.886 20.8-121.9-125.1 155.5 -8.2 -0.8 -4.2 71 71 A L - 0 0 71 -2,-0.3 2,-0.3 -30,-0.2 -30,-0.2 -0.624 19.0-155.9 -93.6 149.4 -11.5 -0.9 -2.3 72 72 A R + 0 0 136 -32,-0.4 2,-0.3 -2,-0.2 -33,-0.0 -0.912 25.6 141.4-121.8 149.8 -13.3 -4.1 -1.2 73 73 A L + 0 0 137 -2,-0.3 -2,-0.0 1,-0.0 -33,-0.0 -0.952 20.6 169.4-179.1 160.0 -17.1 -4.5 -0.4 74 74 A R - 0 0 197 -2,-0.3 -1,-0.0 2,-0.0 0, 0.0 0.319 18.4-159.1-143.2 -75.6 -20.2 -6.7 -0.7 75 75 A G 0 0 85 1,-0.3 -2,-0.0 0, 0.0 0, 0.0 0.965 360.0 360.0 82.5 59.8 -23.3 -5.7 1.2 76 76 A G 0 0 132 0, 0.0 -1,-0.3 0, 0.0 -2,-0.0 -0.995 360.0 360.0 147.0 360.0 -25.3 -8.9 1.5