==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 02-NOV-07 2JX3 . COMPND 2 MOLECULE: PROTEIN DEK; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR H.MATSUO,M.DEVANY . 110 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7321.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 78 70.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 17 15.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 47 42.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 10 9.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A F 0 0 141 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 176.6 8.0 -15.3 0.4 2 2 A T + 0 0 93 50,-0.1 3,-0.1 1,-0.0 0, 0.0 -0.099 360.0 134.1-164.0 53.0 10.0 -12.2 1.7 3 3 A I S S+ 0 0 54 1,-0.2 2,-0.4 2,-0.0 -1,-0.0 0.722 80.3 37.4 -80.6 -18.7 8.4 -8.9 0.5 4 4 A A + 0 0 25 1,-0.1 -1,-0.2 2,-0.1 51,-0.1 -0.980 57.5 137.6-135.4 125.5 8.8 -7.4 4.0 5 5 A Q S S+ 0 0 144 -2,-0.4 -1,-0.1 -3,-0.1 3,-0.1 0.109 80.3 23.6-153.8 28.0 11.6 -8.0 6.4 6 6 A G S S+ 0 0 67 1,-0.1 -2,-0.1 0, 0.0 0, 0.0 0.307 77.7 115.7-160.8 -41.8 12.5 -4.7 8.0 7 7 A K > - 0 0 79 1,-0.1 3,-0.8 2,-0.1 -1,-0.1 -0.151 68.8-129.4 -43.6 121.7 9.5 -2.3 7.9 8 8 A G T 3 S- 0 0 55 1,-0.3 2,-0.2 49,-0.2 -1,-0.1 0.930 95.8 -4.6 -42.0 -54.5 8.6 -1.7 11.6 9 9 A Q T 3 S- 0 0 75 48,-0.2 5,-0.3 4,-0.1 -1,-0.3 -0.591 82.5-173.3-144.0 79.3 5.0 -2.6 10.7 10 10 A K X> - 0 0 12 -3,-0.8 4,-1.4 -2,-0.2 3,-1.3 0.075 55.4 -74.3 -61.0-177.2 4.4 -3.1 7.0 11 11 A L T 34 S+ 0 0 2 1,-0.3 41,-0.3 2,-0.2 10,-0.1 0.741 138.3 53.5 -54.9 -19.1 0.8 -3.6 5.6 12 12 A C T 34 S+ 0 0 48 39,-0.7 -1,-0.3 6,-0.1 40,-0.1 0.763 108.6 47.6 -88.8 -25.4 1.1 -7.1 7.2 13 13 A E T <4 S+ 0 0 122 -3,-1.3 2,-0.2 38,-0.3 -2,-0.2 0.978 87.7 81.7 -79.0 -64.9 2.0 -5.9 10.7 14 14 A I X - 0 0 8 -4,-1.4 4,-3.5 -5,-0.3 5,-0.4 -0.137 66.5-163.3 -42.8 99.0 -0.5 -3.1 11.3 15 15 A E H > S+ 0 0 157 -2,-0.2 4,-2.4 3,-0.2 5,-0.2 0.907 84.8 52.2 -58.4 -40.3 -3.4 -5.4 12.4 16 16 A R H > S+ 0 0 189 94,-0.3 4,-1.6 2,-0.2 5,-0.2 0.992 121.3 29.4 -61.3 -60.1 -6.0 -2.6 11.9 17 17 A I H > S+ 0 0 2 1,-0.2 4,-1.2 93,-0.2 -2,-0.2 0.939 122.3 51.9 -67.3 -44.4 -4.9 -1.7 8.3 18 18 A H H X S+ 0 0 63 -4,-3.5 4,-1.3 2,-0.2 -1,-0.2 0.893 109.1 53.7 -60.0 -36.7 -3.8 -5.3 7.5 19 19 A F H >X S+ 0 0 99 -4,-2.4 3,-2.6 -5,-0.4 4,-0.7 0.999 104.9 47.8 -62.1 -71.7 -7.1 -6.6 8.7 20 20 A F H >< S+ 0 0 43 -4,-1.6 3,-0.6 1,-0.3 -1,-0.2 0.795 113.2 54.7 -41.7 -26.5 -9.5 -4.5 6.6 21 21 A L H >< S+ 0 0 9 -4,-1.2 3,-0.8 -5,-0.2 -1,-0.3 0.816 86.9 76.1 -80.5 -29.1 -7.2 -5.6 3.7 22 22 A S H << S+ 0 0 64 -3,-2.6 2,-0.3 -4,-1.3 -1,-0.2 0.742 86.2 68.2 -54.7 -17.5 -7.6 -9.3 4.5 23 23 A K T << S+ 0 0 112 -4,-0.7 -1,-0.3 -3,-0.6 -2,-0.1 -0.184 73.5 162.0 -96.0 44.8 -11.0 -8.9 2.8 24 24 A K < - 0 0 28 -3,-0.8 2,-0.3 -2,-0.3 3,-0.1 -0.242 25.0-147.3 -61.0 152.4 -9.6 -8.3 -0.7 25 25 A K > - 0 0 111 1,-0.1 4,-4.0 61,-0.0 5,-0.4 -0.899 22.4-113.7-123.7 154.4 -12.1 -8.8 -3.5 26 26 A T H > S+ 0 0 126 -2,-0.3 4,-2.0 2,-0.2 -1,-0.1 0.962 119.9 40.9 -48.5 -59.5 -11.6 -10.0 -7.1 27 27 A D H > S+ 0 0 112 2,-0.2 4,-1.6 1,-0.2 3,-0.3 0.965 116.9 49.5 -56.0 -51.4 -12.5 -6.6 -8.6 28 28 A E H > S+ 0 0 1 1,-0.3 4,-3.0 2,-0.2 3,-0.4 0.966 109.6 50.7 -53.1 -53.8 -10.5 -4.8 -5.9 29 29 A L H X>S+ 0 0 10 -4,-4.0 4,-2.0 1,-0.2 5,-0.6 0.861 103.3 64.1 -53.6 -33.2 -7.5 -7.0 -6.5 30 30 A R H X5S+ 0 0 188 -4,-2.0 4,-0.8 -5,-0.4 -1,-0.2 0.962 114.8 26.7 -57.9 -53.1 -7.9 -6.1 -10.2 31 31 A N H X>S+ 0 0 43 -4,-1.6 4,-1.5 -3,-0.4 5,-0.6 0.899 123.5 51.5 -79.3 -40.8 -7.2 -2.4 -9.8 32 32 A L H X>S+ 0 0 15 -4,-3.0 4,-1.8 -5,-0.3 5,-0.7 0.972 120.1 32.6 -61.7 -54.5 -5.0 -2.6 -6.6 33 33 A H H <5S+ 0 0 0 -4,-2.0 6,-3.0 -5,-0.3 -1,-0.2 0.767 112.2 65.1 -75.8 -23.1 -2.6 -5.3 -8.0 34 34 A K H < S+ 0 0 100 3,-0.1 4,-1.3 2,-0.1 5,-0.2 0.782 130.4 33.5-110.5 -58.0 -4.3 -16.2 -4.2 44 44 A S H > S+ 0 0 74 2,-0.2 4,-1.2 3,-0.1 5,-0.3 0.718 126.6 45.9 -73.2 -17.1 -1.0 -16.4 -2.3 45 45 A S H >>S+ 0 0 31 2,-0.2 4,-2.4 3,-0.2 5,-0.6 0.933 108.3 49.0 -88.6 -63.1 0.0 -13.1 -4.0 46 46 A L H >5S+ 0 0 27 1,-0.2 4,-0.9 3,-0.2 5,-0.3 0.870 118.3 46.7 -44.5 -36.8 -3.0 -10.8 -3.6 47 47 A K H X5S+ 0 0 118 -4,-1.3 4,-1.8 3,-0.1 5,-0.2 0.992 124.0 27.9 -72.1 -62.8 -3.0 -11.9 0.1 48 48 A K H X5S+ 0 0 77 -4,-1.2 4,-2.7 -5,-0.2 -3,-0.2 0.982 121.1 54.3 -64.5 -55.0 0.7 -11.5 0.9 49 49 A N H ><5S+ 0 0 13 -4,-2.4 3,-1.0 -5,-0.3 -3,-0.2 0.945 109.8 46.0 -43.1 -67.5 1.3 -8.7 -1.7 50 50 A V H >< S- 0 0 41 -3,-0.2 4,-1.6 1,-0.1 5,-0.3 -0.652 86.0 -99.2-106.8 166.2 10.3 13.8 0.9 63 63 A V H > S+ 0 0 106 1,-0.2 4,-1.6 -2,-0.2 -1,-0.1 0.923 127.2 45.6 -49.4 -45.1 10.2 14.4 -2.9 64 64 A Q H > S+ 0 0 76 2,-0.2 4,-2.5 1,-0.2 5,-0.3 0.928 102.6 65.5 -67.2 -41.8 8.2 11.2 -3.3 65 65 A Y H > S+ 0 0 38 1,-0.2 4,-1.8 2,-0.2 -2,-0.2 0.952 105.7 42.1 -44.2 -63.2 5.9 12.1 -0.4 66 66 A K H X S+ 0 0 102 -4,-1.6 4,-1.4 1,-0.2 -1,-0.2 0.937 109.1 62.6 -51.1 -45.2 4.5 15.1 -2.3 67 67 A K H >X S+ 0 0 120 -4,-1.6 4,-1.5 -5,-0.3 3,-1.4 0.951 101.2 49.5 -45.0 -60.8 4.4 12.9 -5.4 68 68 A K H 3X S+ 0 0 74 -4,-2.5 4,-3.6 1,-0.3 5,-0.5 0.932 100.0 66.5 -46.5 -50.2 1.9 10.5 -3.8 69 69 A E H 3X S+ 0 0 80 -4,-1.8 4,-0.6 -5,-0.3 -1,-0.3 0.875 108.1 40.1 -40.4 -44.1 -0.3 13.5 -2.8 70 70 A E H XX S+ 0 0 137 -3,-1.4 4,-1.4 -4,-1.4 3,-1.1 0.992 119.8 39.7 -73.1 -64.1 -0.9 14.1 -6.6 71 71 A M H 3X S+ 0 0 137 -4,-1.5 4,-2.0 1,-0.3 5,-0.2 0.921 118.0 51.2 -52.9 -41.7 -1.3 10.6 -7.9 72 72 A L H 3X S+ 0 0 15 -4,-3.6 4,-1.7 -5,-0.3 -1,-0.3 0.776 103.1 63.6 -68.4 -21.8 -3.3 9.7 -4.8 73 73 A K H XX S+ 0 0 122 -3,-1.1 4,-1.3 -4,-0.6 3,-0.7 0.997 107.3 36.7 -65.5 -68.9 -5.4 12.8 -5.5 74 74 A K H >X S+ 0 0 166 -4,-1.4 4,-1.5 1,-0.3 3,-0.6 0.942 122.6 47.8 -48.0 -44.7 -7.0 11.7 -8.8 75 75 A F H 3<>S+ 0 0 65 -4,-2.0 5,-1.8 -5,-0.3 6,-0.3 0.837 95.0 76.8 -66.1 -28.0 -7.0 8.2 -7.2 76 76 A R H <<5S+ 0 0 46 -4,-1.7 4,-0.4 -3,-0.7 5,-0.3 0.950 102.6 38.1 -47.2 -49.9 -8.6 9.8 -4.2 77 77 A N H 5S+ 0 0 19 1,-0.3 4,-2.8 2,-0.2 5,-0.4 0.910 111.5 50.2 -40.2 -56.9 -9.0 4.7 -5.8 80 80 A L H 4XS+ 0 0 15 -5,-1.8 5,-1.3 -4,-0.4 4,-0.3 0.937 101.0 65.5 -52.7 -43.6 -10.9 5.5 -2.5 81 81 A K H X5S+ 0 0 109 -4,-1.2 4,-0.9 -3,-0.4 -1,-0.2 0.944 124.5 13.4 -41.8 -63.9 -14.1 4.2 -4.2 82 82 A S H X5S+ 0 0 31 -4,-1.4 4,-1.1 2,-0.2 -2,-0.2 0.973 134.8 47.1 -78.3 -58.4 -12.6 0.7 -4.3 83 83 A I H ><5S+ 0 0 5 -4,-2.8 3,-3.1 -5,-0.3 -3,-0.3 0.962 113.7 46.9 -46.7 -66.9 -9.7 1.1 -2.0 84 84 A C H >4>S+ 0 0 3 -5,-0.4 3,-1.8 1,-0.3 5,-0.7 0.909 100.4 69.0 -44.6 -43.7 -11.7 2.9 0.7 85 85 A E H 3< - 0 0 80 1,-0.1 4,-2.1 -2,-0.0 3,-0.4 -0.473 50.8 -89.8 -99.4 175.1 -14.7 15.8 2.2 95 95 A N H >> S+ 0 0 85 1,-0.3 4,-2.1 2,-0.2 3,-0.6 0.950 128.5 50.8 -49.1 -54.7 -12.3 15.8 -0.8 96 96 A S H 3> S+ 0 0 87 1,-0.3 4,-1.7 2,-0.2 -1,-0.3 0.879 111.5 49.3 -54.0 -36.0 -9.6 17.6 1.3 97 97 A E H 3> S+ 0 0 70 -3,-0.4 4,-0.8 2,-0.2 -1,-0.3 0.820 108.8 53.9 -75.0 -27.9 -10.1 15.0 4.1 98 98 A L H XX S+ 0 0 36 -4,-2.1 4,-1.1 -3,-0.6 3,-0.7 0.988 114.3 37.0 -70.3 -58.2 -9.8 12.1 1.5 99 99 A V H >X S+ 0 0 21 -4,-2.1 3,-1.7 1,-0.3 4,-1.5 0.972 113.0 57.8 -58.9 -51.1 -6.4 13.1 -0.0 100 100 A K H 3X S+ 0 0 123 -4,-1.7 4,-1.1 -5,-0.4 -1,-0.3 0.832 103.0 58.0 -49.1 -27.9 -5.1 14.3 3.4 101 101 A R H S+ 0 0 105 -4,-0.8 4,-2.0 -3,-0.7 5,-0.5 0.854 99.2 55.9 -73.3 -32.4 -5.9 10.7 4.4 102 102 A I H <<>S+ 0 0 3 -3,-1.7 5,-0.9 -4,-1.1 6,-0.2 0.865 108.9 47.5 -69.1 -31.1 -3.6 9.2 1.7 103 103 A L H <5S+ 0 0 11 -4,-1.5 -1,-0.2 3,-0.2 -2,-0.2 0.785 121.1 37.1 -79.3 -25.0 -0.7 11.3 3.1 104 104 A N H <5S+ 0 0 83 -4,-1.1 -2,-0.2 -5,-0.3 -1,-0.2 0.592 134.6 23.8 -99.7 -13.4 -1.5 10.2 6.7 105 105 A F T ><5S+ 0 0 13 -4,-2.0 3,-1.5 -5,-0.1 -3,-0.2 0.724 125.7 39.8-114.8 -67.9 -2.5 6.6 5.7 106 106 A L T 3