==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER OXIDOREDUCTASE 20-NOV-07 2JXJ . COMPND 2 MOLECULE: HISTONE DEMETHYLASE JARID1A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.TU,C.YUAN,M.TSAI . 96 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7077.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 71 74.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 3.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 10.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 48 50.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 5 5.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 1 1 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 80 A G 0 0 105 0, 0.0 2,-0.9 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 74.7 -13.1 8.5 13.4 2 81 A P - 0 0 115 0, 0.0 2,-1.6 0, 0.0 0, 0.0 -0.551 360.0-155.7 -71.4 102.1 -14.7 6.8 10.4 3 82 A L + 0 0 154 -2,-0.9 0, 0.0 1,-0.1 0, 0.0 -0.594 35.1 148.0 -81.3 85.0 -11.8 6.2 8.0 4 83 A G S S- 0 0 47 -2,-1.6 -1,-0.1 1,-0.0 4,-0.1 0.830 72.4 -47.1 -82.2-101.5 -13.7 6.0 4.7 5 84 A S S > S+ 0 0 62 2,-0.1 4,-1.4 1,-0.1 5,-0.1 -0.066 100.4 109.2-129.5 31.3 -12.1 7.3 1.5 6 85 A R H > S+ 0 0 183 2,-0.2 4,-2.2 1,-0.2 5,-0.2 0.948 82.8 43.4 -72.3 -51.1 -10.7 10.6 2.8 7 86 A V H > S+ 0 0 76 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.858 110.3 58.5 -63.0 -36.2 -7.0 9.7 2.8 8 87 A R H > S+ 0 0 126 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.925 109.2 43.0 -59.7 -46.8 -7.5 7.9 -0.6 9 88 A L H X S+ 0 0 116 -4,-1.4 4,-2.0 2,-0.2 -2,-0.2 0.921 112.9 52.3 -65.9 -45.6 -8.7 11.2 -2.2 10 89 A D H X S+ 0 0 103 -4,-2.2 4,-1.3 1,-0.2 -2,-0.2 0.900 110.0 49.4 -57.9 -43.0 -6.0 13.3 -0.5 11 90 A F H >X S+ 0 0 47 -4,-2.5 4,-1.9 1,-0.2 3,-0.6 0.939 110.1 49.3 -62.4 -48.8 -3.3 11.0 -1.7 12 91 A L H 3X S+ 0 0 45 -4,-2.1 4,-3.2 1,-0.2 5,-0.3 0.833 104.2 62.0 -60.0 -32.9 -4.5 11.0 -5.3 13 92 A D H 3X S+ 0 0 89 -4,-2.0 4,-2.0 1,-0.2 -1,-0.2 0.881 105.5 45.7 -61.1 -39.6 -4.7 14.8 -5.1 14 93 A Q H X>S+ 0 0 43 -4,-2.1 4,-1.8 -5,-0.2 5,-1.2 0.849 105.8 65.1 -66.3 -35.0 2.3 14.9 -12.2 20 99 A E H 3<5S+ 0 0 104 -4,-1.3 -1,-0.2 1,-0.3 -2,-0.2 0.862 93.1 61.4 -55.8 -37.7 0.1 17.7 -13.6 21 100 A L H 3<5S+ 0 0 141 -4,-1.4 -1,-0.3 -3,-0.4 -2,-0.2 0.823 105.6 48.0 -59.3 -31.6 3.0 20.2 -13.1 22 101 A Q H <<5S- 0 0 83 -3,-1.2 -1,-0.2 -4,-0.6 -2,-0.2 0.908 114.4-116.6 -75.6 -44.7 5.0 18.0 -15.5 23 102 A G T <5S+ 0 0 61 -4,-1.8 -3,-0.2 0, 0.0 -2,-0.1 0.622 83.5 111.0 113.8 22.9 2.2 17.8 -18.2 24 103 A S < - 0 0 79 -5,-1.2 -4,-0.2 3,-0.0 -5,-0.1 0.709 68.6-140.2 -95.8 -26.1 1.5 14.1 -18.2 25 104 A T - 0 0 74 -6,-0.4 2,-0.1 -9,-0.1 -8,-0.1 0.846 21.0-103.1 64.4 109.8 -1.9 14.3 -16.6 26 105 A L - 0 0 36 -10,-0.4 2,-0.4 -14,-0.1 -10,-0.1 -0.403 40.5-167.0 -64.3 132.6 -2.7 11.5 -14.1 27 106 A K - 0 0 144 -2,-0.1 -1,-0.0 2,-0.0 -2,-0.0 -0.986 16.1-145.9-128.0 132.1 -5.0 8.8 -15.4 28 107 A I - 0 0 100 -2,-0.4 2,-0.1 7,-0.0 -2,-0.0 -0.805 20.9-151.0 -98.8 98.7 -6.8 6.1 -13.5 29 108 A P - 0 0 43 0, 0.0 7,-1.0 0, 0.0 2,-0.4 -0.369 11.4-129.0 -68.6 144.8 -6.9 2.9 -15.6 30 109 A V E -A 35 0A 102 5,-0.2 2,-0.4 -2,-0.1 5,-0.2 -0.818 23.4-172.4 -99.6 133.3 -9.9 0.6 -15.1 31 110 A V E > -A 34 0A 11 3,-2.6 3,-0.8 -2,-0.4 44,-0.0 -0.988 68.5 -5.4-129.1 128.8 -9.3 -3.2 -14.6 32 111 A E T 3 S- 0 0 67 -2,-0.4 -1,-0.2 1,-0.3 3,-0.1 0.876 127.6 -59.6 60.1 38.7 -11.9 -5.9 -14.4 33 112 A R T 3 S+ 0 0 219 1,-0.2 2,-0.3 -3,-0.1 -1,-0.3 0.809 123.0 95.0 60.1 30.2 -14.6 -3.3 -14.7 34 113 A K E < S-A 31 0A 102 -3,-0.8 -3,-2.6 -5,-0.0 2,-0.2 -0.924 82.4 -88.6-144.3 167.7 -13.3 -1.7 -11.5 35 114 A I E -A 30 0A 126 -2,-0.3 2,-0.6 -5,-0.2 -5,-0.2 -0.577 40.3-118.8 -81.8 141.4 -10.9 1.0 -10.3 36 115 A L - 0 0 14 -7,-1.0 -1,-0.1 -2,-0.2 -4,-0.0 -0.702 29.8-129.1 -83.7 117.8 -7.2 0.2 -9.8 37 116 A D + 0 0 31 -2,-0.6 -1,-0.1 1,-0.1 30,-0.0 -0.090 31.6 170.0 -59.1 162.8 -6.1 0.6 -6.2 38 117 A L > + 0 0 22 3,-0.1 4,-2.6 49,-0.0 5,-0.2 0.469 69.9 47.6-139.7 -58.4 -3.1 2.7 -5.4 39 118 A Y H > S+ 0 0 82 2,-0.2 4,-1.6 1,-0.2 5,-0.1 0.945 121.3 39.0 -57.6 -51.3 -2.6 3.5 -1.7 40 119 A A H > S+ 0 0 32 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.902 114.7 53.9 -66.3 -42.5 -3.2 -0.1 -0.7 41 120 A L H > S+ 0 0 1 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.867 107.4 51.7 -60.3 -38.1 -1.3 -1.5 -3.7 42 121 A S H X S+ 0 0 22 -4,-2.6 4,-1.7 2,-0.2 -1,-0.2 0.884 110.8 47.5 -66.7 -39.9 1.7 0.6 -2.6 43 122 A K H X S+ 0 0 127 -4,-1.6 4,-2.6 -5,-0.2 -2,-0.2 0.911 108.9 53.4 -68.0 -43.9 1.6 -0.7 0.9 44 123 A I H X S+ 0 0 9 -4,-2.5 4,-0.8 1,-0.2 -1,-0.2 0.883 107.9 51.7 -58.8 -40.7 1.3 -4.3 -0.2 45 124 A V H >X S+ 0 0 0 -4,-1.7 4,-1.1 2,-0.2 3,-0.9 0.945 111.4 45.5 -62.3 -50.2 4.4 -4.0 -2.4 46 125 A A H >X S+ 0 0 61 -4,-1.7 3,-0.9 1,-0.3 4,-0.9 0.923 107.3 57.7 -59.4 -47.1 6.6 -2.5 0.4 47 126 A S H 3< S+ 0 0 85 -4,-2.6 -1,-0.3 1,-0.3 -2,-0.2 0.725 106.6 51.9 -57.1 -21.5 5.4 -5.2 2.9 48 127 A K H << S- 0 0 52 -3,-0.9 -1,-0.3 -4,-0.8 -2,-0.2 0.757 140.3 -71.2 -86.2 -27.9 6.7 -7.7 0.4 49 128 A G H > S+ 0 0 10 -2,-1.7 4,-1.5 -5,-0.1 3,-0.8 0.041 127.6 65.7-177.8 -53.4 9.2 -4.3 -5.2 52 131 A E H 3> S+ 0 0 141 -3,-0.3 4,-2.7 1,-0.3 5,-0.2 0.874 99.8 58.1 -57.0 -39.3 12.0 -6.6 -6.5 53 132 A M H 3X S+ 0 0 92 -4,-1.0 4,-1.8 1,-0.2 -1,-0.3 0.828 102.5 55.5 -60.9 -32.1 11.3 -9.0 -3.6 54 133 A V H <>>S+ 0 0 0 -3,-0.8 5,-2.1 2,-0.2 4,-1.5 0.921 111.6 41.0 -67.1 -45.6 7.8 -9.4 -4.9 55 134 A T H <5S+ 0 0 60 -4,-1.5 -2,-0.2 3,-0.2 -1,-0.2 0.882 112.8 54.9 -70.0 -39.5 8.8 -10.4 -8.4 56 135 A K H <5S+ 0 0 131 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.871 121.0 30.9 -61.7 -37.8 11.6 -12.6 -7.1 57 136 A E H <5S- 0 0 122 -4,-1.8 -1,-0.2 -5,-0.2 -2,-0.2 0.596 105.0-129.5 -95.2 -14.9 9.1 -14.5 -5.0 58 137 A K T ><5 + 0 0 151 -4,-1.5 3,-0.5 -5,-0.2 -3,-0.2 0.880 59.3 143.5 67.2 38.9 6.2 -14.0 -7.4 59 138 A K T 3>< + 0 0 65 -5,-2.1 4,-0.9 -6,-0.2 3,-0.2 0.221 38.4 100.4 -92.6 13.9 4.0 -12.7 -4.6 60 139 A W H 3> S+ 0 0 7 -6,-0.5 4,-1.6 1,-0.2 3,-0.2 0.833 73.5 62.1 -67.1 -32.4 2.4 -10.2 -7.0 61 140 A S H <> S+ 0 0 60 -3,-0.5 4,-2.3 1,-0.2 -1,-0.2 0.887 100.4 52.7 -60.3 -40.5 -0.6 -12.5 -7.5 62 141 A K H > S+ 0 0 139 -3,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.823 103.7 59.2 -65.1 -31.5 -1.4 -12.2 -3.7 63 142 A V H X S+ 0 0 0 -4,-0.9 4,-0.9 -3,-0.2 -1,-0.2 0.940 110.5 39.2 -63.1 -49.1 -1.4 -8.4 -4.0 64 143 A G H X>S+ 0 0 3 -4,-1.6 4,-1.8 1,-0.2 5,-0.8 0.888 113.2 55.3 -69.0 -39.9 -4.1 -8.3 -6.6 65 144 A S H <5S+ 0 0 76 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.880 102.9 56.6 -60.3 -39.5 -6.1 -11.0 -5.0 66 145 A R H <5S+ 0 0 181 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.826 105.0 54.0 -62.0 -31.9 -6.2 -9.1 -1.7 67 146 A L H <5S- 0 0 44 -4,-0.9 -2,-0.2 -3,-0.5 -1,-0.2 0.960 127.0 -91.0 -67.8 -52.9 -7.7 -6.2 -3.6 68 147 A G T <5 + 0 0 42 -4,-1.8 2,-0.4 1,-0.1 -3,-0.2 0.519 68.6 148.9 140.5 44.3 -10.6 -8.1 -5.0 69 148 A Y < - 0 0 27 -5,-0.8 -1,-0.1 -4,-0.1 -37,-0.0 -0.868 42.5-125.0-106.4 134.8 -9.8 -9.6 -8.4 70 149 A L - 0 0 111 -2,-0.4 2,-1.2 1,-0.1 5,-0.2 -0.479 42.7 -87.1 -76.0 144.9 -11.3 -12.8 -9.7 71 150 A P S S+ 0 0 140 0, 0.0 -1,-0.1 0, 0.0 2,-0.1 -0.281 74.3 150.7 -53.4 89.2 -8.9 -15.6 -10.9 72 151 A G - 0 0 54 -2,-1.2 -3,-0.0 -3,-0.0 0, 0.0 -0.035 59.6 -63.5-103.9-151.8 -8.5 -14.5 -14.5 73 152 A K S S- 0 0 222 1,-0.1 3,-0.0 -2,-0.1 0, 0.0 0.999 104.1 -41.3 -61.5 -72.1 -5.7 -14.7 -17.1 74 153 A G >> + 0 0 39 1,-0.0 3,-1.0 2,-0.0 4,-0.7 -0.335 61.3 162.2-164.1 72.8 -3.0 -12.7 -15.4 75 154 A T H 3> S+ 0 0 25 1,-0.2 4,-2.4 2,-0.2 3,-0.3 0.750 73.7 75.1 -65.8 -23.7 -4.0 -9.5 -13.6 76 155 A G H 3> S+ 0 0 22 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.859 91.7 53.4 -56.9 -37.0 -0.7 -9.6 -11.8 77 156 A S H <> S+ 0 0 92 -3,-1.0 4,-1.7 1,-0.2 -1,-0.2 0.860 110.3 47.0 -66.6 -36.2 1.1 -8.4 -15.0 78 157 A L H X S+ 0 0 80 -4,-0.7 4,-3.0 -3,-0.3 -2,-0.2 0.872 110.1 52.7 -72.9 -38.4 -1.2 -5.4 -15.3 79 158 A L H X S+ 0 0 0 -4,-2.4 4,-3.2 2,-0.2 5,-0.3 0.915 109.3 49.1 -63.4 -44.6 -0.8 -4.5 -11.6 80 159 A K H X S+ 0 0 64 -4,-2.1 4,-2.8 2,-0.2 -1,-0.2 0.933 116.6 41.4 -61.0 -48.0 3.0 -4.5 -11.8 81 160 A S H < S+ 0 0 70 -4,-1.7 -2,-0.2 2,-0.2 -1,-0.2 0.901 117.2 48.5 -67.0 -42.1 2.9 -2.3 -15.0 82 161 A H H X>S+ 0 0 50 -4,-3.0 4,-0.9 1,-0.2 5,-0.6 0.934 117.4 40.5 -64.0 -47.8 0.2 -0.1 -13.6 83 162 A Y H <>S+ 0 0 5 -4,-3.2 5,-3.2 1,-0.3 2,-1.6 0.932 113.3 55.3 -67.0 -46.9 1.9 0.4 -10.2 84 163 A E T <5S+ 0 0 87 -4,-2.8 -1,-0.3 -5,-0.3 -4,-0.0 -0.520 108.5 46.3 -88.4 69.7 5.3 0.7 -11.7 85 164 A R T 45S+ 0 0 190 -2,-1.6 -1,-0.2 -3,-0.3 -2,-0.2 0.229 126.6 7.8-171.5 -36.8 4.5 3.6 -14.1 86 165 A I T <5S+ 0 0 50 -4,-0.9 4,-0.5 -3,-0.4 -3,-0.1 0.637 133.3 34.0-126.5 -48.3 2.5 6.3 -12.3 87 166 A L T >>> S+ 0 0 31 0, 0.0 4,-2.3 0, 0.0 -1,-0.2 0.765 98.9 70.6 -54.8 -25.8 7.7 6.7 -10.0 90 169 A Y H <> S+ 0 0 22 -3,-0.5 4,-1.3 -4,-0.5 -2,-0.2 0.952 99.6 43.9 -56.9 -53.1 6.0 9.2 -7.8 91 170 A E H XX S+ 0 0 57 -4,-1.0 4,-3.6 -3,-0.8 3,-0.7 0.938 113.0 51.4 -57.7 -50.1 8.0 8.1 -4.7 92 171 A L H 3< S+ 0 0 102 -4,-1.3 -1,-0.2 1,-0.3 -2,-0.2 0.855 103.0 61.2 -56.3 -36.9 11.2 8.0 -6.6 93 172 A F H 3< S+ 0 0 102 -4,-2.3 3,-0.4 1,-0.2 -1,-0.3 0.886 115.9 31.4 -58.1 -40.7 10.5 11.5 -7.9 94 173 A Q H << S+ 0 0 109 -4,-1.3 -2,-0.2 -3,-0.7 -1,-0.2 0.863 127.9 40.4 -85.1 -40.9 10.5 12.8 -4.3 95 174 A S < 0 0 106 -4,-3.6 -2,-0.2 -5,-0.2 -1,-0.2 -0.048 360.0 360.0 -97.8 30.9 13.1 10.4 -2.9 96 175 A G 0 0 123 -3,-0.4 -3,-0.1 -5,-0.1 -4,-0.0 0.065 360.0 360.0-115.0 360.0 15.2 10.6 -6.1