==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN BINDING 07-DEC-07 2JY7 . COMPND 2 MOLECULE: UBIQUITIN-BINDING PROTEIN P62; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR J.E.LONG,R.LAYFIELD,M.S.SEARLE . 52 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3798.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 35 67.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 15.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 19 36.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 5 9.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 129 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-117.4 32.7 -15.9 3.3 2 2 A S - 0 0 36 5,-0.1 5,-0.1 6,-0.0 4,-0.0 -0.850 360.0-172.2-106.6 99.9 33.0 -12.3 2.3 3 3 A P - 0 0 47 0, 0.0 2,-3.2 0, 0.0 4,-0.4 -0.649 37.4-105.9 -92.3 146.8 32.0 -11.8 -1.3 4 4 A P S S+ 0 0 123 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.312 96.5 93.5 -68.3 64.4 32.4 -8.5 -3.3 5 5 A E S S- 0 0 148 -2,-3.2 6,-0.0 0, 0.0 -3,-0.0 -0.000 116.8 -54.2-145.8 29.7 28.6 -7.7 -3.1 6 6 A A S S+ 0 0 67 -3,-0.2 5,-0.0 1,-0.2 3,-0.0 0.864 81.4 166.1 94.2 50.7 28.4 -5.5 0.0 7 7 A D >> - 0 0 7 -4,-0.4 4,-4.6 1,-0.1 5,-0.7 -0.618 55.8 -91.6 -94.5 155.5 30.1 -7.7 2.6 8 8 A P H >5S+ 0 0 95 0, 0.0 4,-3.0 0, 0.0 5,-0.5 0.825 131.2 41.1 -28.5 -59.4 31.2 -6.4 6.1 9 9 A R H >>S+ 0 0 103 3,-0.2 4,-2.5 1,-0.2 5,-2.2 0.939 122.8 38.8 -58.1 -52.5 34.6 -5.7 4.6 10 10 A L H 4>S+ 0 0 16 3,-0.3 5,-2.8 1,-0.2 -1,-0.2 0.725 124.4 40.9 -73.8 -21.4 33.2 -4.3 1.3 11 11 A I H <5S+ 0 0 91 -4,-4.6 5,-0.2 3,-0.2 -2,-0.2 0.701 129.5 31.0 -96.2 -22.3 30.4 -2.6 3.1 12 12 A E H X>>XS+ 0 0 37 -5,-2.8 3,-2.6 1,-0.3 4,-2.4 0.908 110.1 50.4 -37.1 -65.4 31.9 1.4 1.0 16 16 A Q H 3<5S+ 0 0 54 -4,-0.8 4,-0.5 1,-0.3 -1,-0.3 0.819 108.4 54.7 -45.9 -32.5 33.7 3.9 3.3 17 17 A M H <<>S+ 0 0 3 -3,-1.6 5,-0.6 -4,-0.8 -1,-0.3 0.791 121.7 29.7 -72.7 -26.1 36.3 4.0 0.5 18 18 A L H XX5S+ 0 0 105 -3,-2.6 3,-2.2 -4,-1.6 4,-0.5 0.904 121.8 45.0 -93.3 -66.6 33.5 4.8 -1.9 19 19 A S T 3<5S+ 0 0 103 -4,-2.4 -3,-0.2 1,-0.3 -2,-0.1 0.451 102.0 72.2 -62.0 2.1 30.9 6.8 0.0 20 20 A M T 34> + 0 0 42 2,-0.1 4,-3.8 3,-0.1 3,-2.2 0.729 61.2 79.2 -96.3 -30.7 45.2 -1.1 -6.2 29 29 A L H 3> S+ 0 0 20 1,-0.3 4,-1.5 2,-0.3 5,-0.5 0.936 89.1 55.8 -42.7 -63.9 42.1 -1.0 -3.9 30 30 A T H 34 S+ 0 0 89 1,-0.2 4,-0.5 2,-0.2 -1,-0.3 0.791 123.5 31.4 -39.4 -29.1 41.2 -4.6 -4.8 31 31 A R H <> S+ 0 0 180 -3,-2.2 4,-3.1 2,-0.1 5,-0.4 0.900 114.1 56.1 -94.0 -63.3 44.7 -5.2 -3.6 32 32 A L H X S+ 0 0 11 -4,-3.8 4,-0.7 2,-0.2 6,-0.3 0.882 109.7 48.0 -34.4 -65.7 45.3 -2.5 -0.9 33 33 A L H ><>S+ 0 0 2 -4,-1.5 3,-3.7 1,-0.2 5,-3.0 0.931 113.4 46.6 -39.7 -69.9 42.3 -3.7 1.1 34 34 A Q H >45S+ 0 0 102 -5,-0.5 3,-1.4 -4,-0.5 -1,-0.2 0.873 115.8 45.4 -40.3 -51.3 43.3 -7.3 0.9 35 35 A T H 3<5S+ 0 0 86 -4,-3.1 -1,-0.3 1,-0.3 -2,-0.2 0.456 117.5 47.7 -75.8 0.4 46.9 -6.4 1.9 36 36 A K T <<5S- 0 0 80 -3,-3.7 -1,-0.3 -4,-0.7 -2,-0.2 -0.018 122.9-101.6-127.5 25.4 45.3 -4.2 4.6 37 37 A N T < 5S- 0 0 126 -3,-1.4 -3,-0.3 1,-0.2 -4,-0.1 0.872 81.1 -58.1 55.4 35.7 42.8 -6.8 5.9 38 38 A Y S - 0 0 47 -6,-0.5 4,-0.6 -7,-0.2 3,-0.2 -0.963 46.7-161.1-126.3 141.9 40.9 -1.7 5.7 40 40 A I H > S+ 0 0 36 -2,-0.4 4,-2.7 2,-0.2 5,-0.4 0.676 78.4 90.9 -88.5 -21.0 40.6 1.9 4.6 41 41 A G H > S+ 0 0 63 1,-0.3 4,-0.6 2,-0.2 -1,-0.2 0.873 109.6 17.4 -39.3 -47.7 42.9 3.1 7.3 42 42 A A H > S+ 0 0 29 -3,-0.2 4,-0.8 2,-0.2 -1,-0.3 0.626 114.2 76.6 -99.7 -20.1 45.7 2.7 4.9 43 43 A A H >X S+ 0 0 0 -4,-0.6 4,-1.1 1,-0.2 3,-0.7 0.912 97.4 47.7 -57.4 -43.5 43.5 2.6 1.8 44 44 A L H >X>S+ 0 0 34 -4,-2.7 4,-2.0 1,-0.2 3,-1.7 0.975 97.5 66.5 -61.6 -58.3 43.1 6.4 2.0 45 45 A D H 3X5S+ 0 0 66 -4,-0.6 4,-0.7 -5,-0.4 -1,-0.2 0.740 111.7 39.3 -35.2 -29.4 46.8 7.1 2.5 46 46 A T H <<5S+ 0 0 41 -4,-0.8 -1,-0.3 -3,-0.7 -2,-0.2 0.718 109.5 58.2 -96.4 -26.6 47.2 5.8 -1.1 47 47 A I H <<5S- 0 0 0 -3,-1.7 -2,-0.2 -4,-1.1 -3,-0.1 0.861 140.4 -29.7 -73.0 -36.2 44.0 7.3 -2.7 48 48 A Q H <5S+ 0 0 107 -4,-2.0 -3,-0.2 -26,-0.0 -2,-0.2 0.104 130.4 62.4-174.5 39.6 44.9 10.9 -1.9 49 49 A Y << + 0 0 135 -4,-0.7 3,-0.3 -5,-0.6 -3,-0.1 -0.070 46.3 136.4-166.1 48.4 47.0 11.1 1.3 50 50 A S + 0 0 76 1,-0.2 -4,-0.1 -4,-0.2 -5,-0.1 -0.158 66.0 66.1 -94.9 39.5 50.3 9.2 0.7 51 51 A K 0 0 209 -2,-0.1 -1,-0.2 -3,-0.0 -5,-0.0 -0.284 360.0 360.0-156.1 60.3 52.4 12.0 2.4 52 52 A H 0 0 235 -3,-0.3 -2,-0.1 -7,-0.0 -7,-0.0 0.589 360.0 360.0-125.1 360.0 51.6 12.3 6.1