==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 13-DEC-07 2JYG . COMPND 2 MOLECULE: CAPSID PROTEIN P24 (CA); . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR H.C.WONG,R.SHIN,N.R.KRISHNA . 84 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6859.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 54.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 33 39.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 148 A T 0 0 135 0, 0.0 2,-0.1 0, 0.0 26,-0.1 0.000 360.0 360.0 360.0 11.5 -15.4 5.1 5.7 2 149 A S - 0 0 62 1,-0.1 3,-0.4 25,-0.0 4,-0.2 -0.329 360.0-110.4 -90.0 175.0 -12.2 5.1 7.7 3 150 A I S > S+ 0 0 34 1,-0.2 3,-0.9 2,-0.2 22,-0.1 0.668 113.5 71.7 -78.1 -18.4 -8.7 4.5 6.5 4 151 A L T 3 S+ 0 0 127 1,-0.3 -1,-0.2 3,-0.0 17,-0.0 0.846 89.8 59.0 -64.3 -34.8 -8.7 1.2 8.4 5 152 A D T 3 S+ 0 0 107 -3,-0.4 2,-1.2 1,-0.1 -1,-0.3 0.705 87.2 90.1 -66.2 -19.7 -11.1 -0.2 5.9 6 153 A I < + 0 0 2 -3,-0.9 2,-0.3 -4,-0.2 -1,-0.1 -0.694 60.8 142.3 -83.3 98.3 -8.4 0.5 3.4 7 154 A R - 0 0 114 -2,-1.2 2,-1.4 40,-0.0 40,-0.2 -0.818 62.4 -84.8-131.8 171.0 -6.4 -2.7 3.4 8 155 A Q - 0 0 18 38,-0.7 6,-0.1 -2,-0.3 43,-0.1 -0.655 51.2-150.7 -81.5 93.5 -4.6 -4.9 0.9 9 156 A G - 0 0 25 -2,-1.4 39,-0.1 4,-0.3 8,-0.1 -0.103 12.4-127.1 -59.8 161.9 -7.4 -7.1 -0.5 10 157 A P S S+ 0 0 141 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.980 108.6 22.5 -74.9 -63.4 -6.7 -10.6 -1.7 11 158 A K S S+ 0 0 202 2,-0.1 -2,-0.1 0, 0.0 0, 0.0 0.666 112.4 92.2 -77.2 -17.7 -8.2 -10.5 -5.2 12 159 A E S S- 0 0 55 1,-0.1 2,-0.0 2,-0.0 0, 0.0 -0.640 77.1-130.3 -82.5 133.3 -7.8 -6.7 -5.0 13 160 A P > - 0 0 68 0, 0.0 4,-1.5 0, 0.0 -4,-0.3 -0.174 23.4-107.2 -74.9 172.2 -4.6 -5.3 -6.5 14 161 A F H > S+ 0 0 16 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.769 118.1 60.8 -70.5 -27.0 -2.3 -2.9 -4.8 15 162 A R H > S+ 0 0 186 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.924 105.7 44.8 -65.3 -46.6 -3.4 -0.2 -7.1 16 163 A D H > S+ 0 0 93 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.847 113.2 53.1 -65.4 -34.9 -7.0 -0.5 -6.0 17 164 A Y H X S+ 0 0 0 -4,-1.5 4,-2.4 2,-0.2 -2,-0.2 0.901 109.6 46.8 -66.5 -43.2 -5.8 -0.5 -2.4 18 165 A V H X S+ 0 0 18 -4,-2.5 4,-2.8 2,-0.2 5,-0.3 0.909 110.7 52.8 -64.8 -43.9 -3.8 2.7 -2.9 19 166 A D H X S+ 0 0 90 -4,-2.5 4,-1.5 1,-0.2 -1,-0.2 0.905 110.9 47.5 -57.6 -43.9 -6.7 4.3 -4.6 20 167 A R H X S+ 0 0 123 -4,-2.1 4,-2.5 2,-0.2 5,-0.3 0.907 110.5 52.0 -63.5 -44.2 -8.9 3.4 -1.6 21 168 A F H X S+ 0 0 2 -4,-2.4 4,-2.2 1,-0.2 -2,-0.2 0.917 115.4 40.3 -58.3 -47.1 -6.3 4.6 0.8 22 169 A Y H X S+ 0 0 78 -4,-2.8 4,-1.8 2,-0.2 -1,-0.2 0.700 111.4 60.4 -74.6 -20.9 -6.1 8.0 -0.9 23 170 A K H < S+ 0 0 118 -4,-1.5 -2,-0.2 -5,-0.3 -1,-0.2 0.915 112.0 36.3 -71.6 -45.3 -9.9 7.9 -1.4 24 171 A T H >X S+ 0 0 9 -4,-2.5 3,-1.4 2,-0.2 4,-0.9 0.862 113.8 57.8 -74.6 -38.2 -10.5 7.8 2.4 25 172 A L H >< S+ 0 0 32 -4,-2.2 3,-0.8 1,-0.3 4,-0.3 0.911 112.1 40.9 -57.5 -45.0 -7.6 10.1 3.1 26 173 A R T 3< S+ 0 0 206 -4,-1.8 -1,-0.3 1,-0.2 -2,-0.2 0.336 106.4 68.6 -84.7 6.1 -9.1 12.7 0.9 27 174 A A T <4 S+ 0 0 60 -3,-1.4 -1,-0.2 -26,-0.1 -2,-0.2 0.612 127.1 1.0 -96.1 -18.1 -12.5 11.8 2.4 28 175 A E S << S- 0 0 144 -4,-0.9 -2,-0.2 -3,-0.8 -3,-0.1 -0.005 77.3-169.7-160.6 35.5 -11.6 13.2 5.8 29 176 A Q + 0 0 106 -4,-0.3 2,-0.3 -5,-0.0 -3,-0.1 -0.081 49.3 98.6 -38.0 97.3 -8.1 14.6 5.4 30 177 A A + 0 0 69 -5,-0.1 2,-0.3 4,-0.0 -2,-0.1 -0.916 37.5 164.4 180.0 157.1 -7.4 15.2 9.0 31 178 A S > - 0 0 86 -2,-0.3 3,-0.9 1,-0.0 4,-0.2 -0.921 51.5-103.0-178.3 155.5 -5.7 13.8 12.1 32 179 A Q T 3 S+ 0 0 189 1,-0.3 4,-0.1 -2,-0.3 -1,-0.0 0.636 124.7 11.1 -62.1 -13.3 -4.5 14.6 15.6 33 180 A E T 3> S+ 0 0 114 2,-0.1 4,-2.3 1,-0.0 -1,-0.3 -0.299 70.1 156.2-164.9 66.8 -1.0 14.7 13.9 34 181 A V T <4 S+ 0 0 53 -3,-0.9 5,-0.2 2,-0.2 -2,-0.1 0.893 82.3 52.6 -62.8 -41.2 -1.2 14.6 10.2 35 182 A K T 4 S+ 0 0 209 1,-0.2 -1,-0.2 -4,-0.2 -2,-0.1 0.969 114.9 38.8 -58.2 -57.6 2.2 16.2 10.0 36 183 A N T 4 S+ 0 0 130 2,-0.1 -1,-0.2 -4,-0.1 -2,-0.2 0.801 107.5 87.2 -62.7 -29.3 3.8 13.6 12.3 37 184 A A < - 0 0 40 -4,-2.3 2,-0.4 1,-0.0 3,-0.1 -0.306 69.5-150.2 -69.8 156.1 1.7 11.1 10.5 38 185 A A >> - 0 0 39 1,-0.2 4,-2.0 -2,-0.0 3,-1.1 -0.873 6.2-160.4-135.0 99.7 3.0 9.4 7.3 39 186 A T H >> S+ 0 0 66 -2,-0.4 4,-2.9 1,-0.3 3,-0.9 0.901 97.9 51.5 -40.0 -58.7 0.4 8.4 4.8 40 187 A E H 3> S+ 0 0 53 1,-0.3 4,-2.4 2,-0.2 -1,-0.3 0.844 108.9 52.6 -49.0 -37.7 2.8 6.0 3.2 41 188 A T H <> S+ 0 0 54 -3,-1.1 4,-2.8 2,-0.2 -1,-0.3 0.842 109.2 48.9 -67.7 -34.9 3.4 4.7 6.7 42 189 A L H < S+ 0 0 13 -4,-2.4 3,-1.0 -5,-0.3 -2,-0.2 0.926 117.7 44.8 -65.9 -46.4 2.3 0.1 4.7 45 192 A Q H 3< S+ 0 0 128 -4,-2.8 -2,-0.2 1,-0.3 -1,-0.2 0.863 117.9 44.1 -65.0 -37.5 1.0 -0.4 8.2 46 193 A N T 3< S+ 0 0 21 -4,-4.1 -38,-0.7 -5,-0.1 -1,-0.3 0.324 103.5 94.7 -88.0 6.3 -2.5 -1.0 6.8 47 194 A A S < S- 0 0 4 -3,-1.0 5,-0.1 1,-0.2 -3,-0.1 -0.625 90.0 -83.2 -97.5 158.0 -0.9 -3.1 4.2 48 195 A N > - 0 0 69 -2,-0.2 4,-1.0 -39,-0.1 -1,-0.2 0.145 42.1-108.8 -47.4 174.0 -0.5 -6.9 4.3 49 196 A P H > S+ 0 0 83 0, 0.0 4,-2.3 0, 0.0 5,-0.2 0.945 116.1 49.1 -75.0 -52.1 2.5 -8.4 6.2 50 197 A D H > S+ 0 0 92 1,-0.3 4,-2.5 2,-0.2 3,-0.4 0.942 112.9 47.7 -51.2 -54.9 4.5 -9.6 3.2 51 198 A C H > S+ 0 0 0 1,-0.3 4,-2.9 2,-0.2 -1,-0.3 0.867 108.2 57.8 -54.5 -37.8 4.1 -6.2 1.5 52 199 A K H X S+ 0 0 84 -4,-1.0 4,-2.2 1,-0.2 -1,-0.3 0.909 107.3 46.3 -58.7 -44.2 5.2 -4.8 4.8 53 200 A T H X S+ 0 0 92 -4,-2.3 4,-2.0 -3,-0.4 -2,-0.2 0.893 112.3 50.1 -65.0 -41.6 8.4 -6.8 4.6 54 201 A I H X S+ 0 0 41 -4,-2.5 4,-1.9 1,-0.2 -2,-0.2 0.878 113.6 45.9 -63.9 -38.9 8.9 -5.7 1.0 55 202 A L H X S+ 0 0 8 -4,-2.9 4,-1.3 2,-0.2 -1,-0.2 0.826 109.6 55.2 -72.0 -33.2 8.3 -2.1 2.0 56 203 A K H < S+ 0 0 144 -4,-2.2 -2,-0.2 -5,-0.2 -1,-0.2 0.852 112.2 42.9 -67.0 -35.7 10.6 -2.6 5.0 57 204 A A H < S+ 0 0 86 -4,-2.0 -2,-0.2 -5,-0.1 -1,-0.2 0.814 109.5 62.3 -78.3 -32.7 13.3 -3.8 2.6 58 205 A L H < S- 0 0 50 -4,-1.9 -2,-0.2 -5,-0.2 -3,-0.1 0.971 110.1 -89.1 -53.9 -86.0 12.5 -1.0 0.1 59 206 A G >< - 0 0 22 -4,-1.3 2,-2.7 3,-0.0 3,-0.9 -0.905 31.8 -82.6 174.3 160.3 13.2 2.1 2.1 60 207 A P T 3 S+ 0 0 148 0, 0.0 -4,-0.1 0, 0.0 -19,-0.1 -0.301 125.8 18.7 -75.0 56.7 11.9 4.7 4.5 61 208 A G T 3 S+ 0 0 62 -2,-2.7 2,-0.1 -6,-0.2 -20,-0.0 0.429 82.3 174.7 143.7 54.7 10.4 6.6 1.6 62 209 A A < - 0 0 23 -3,-0.9 2,-0.1 -7,-0.1 -22,-0.0 -0.386 35.9-100.0 -79.6 160.2 10.0 4.5 -1.5 63 210 A T > - 0 0 92 1,-0.1 4,-3.0 -2,-0.1 3,-0.4 -0.436 27.6-113.3 -80.0 155.0 8.3 5.7 -4.6 64 211 A L H > S+ 0 0 87 1,-0.3 4,-3.0 2,-0.2 5,-0.3 0.898 122.0 51.6 -51.8 -44.6 4.8 4.8 -5.5 65 212 A E H > S+ 0 0 143 1,-0.2 4,-1.6 2,-0.2 -1,-0.3 0.844 111.7 47.3 -61.5 -35.1 6.2 2.8 -8.4 66 213 A E H > S+ 0 0 101 -3,-0.4 4,-2.0 2,-0.2 -2,-0.2 0.862 111.9 49.9 -73.6 -38.2 8.5 1.1 -6.0 67 214 A M H X S+ 0 0 7 -4,-3.0 4,-2.1 2,-0.2 -2,-0.2 0.931 116.5 40.0 -65.5 -48.2 5.8 0.4 -3.6 68 215 A M H X S+ 0 0 50 -4,-3.0 4,-2.7 2,-0.2 -1,-0.2 0.808 113.4 56.5 -70.6 -31.1 3.5 -1.1 -6.2 69 216 A T H X S+ 0 0 65 -4,-1.6 4,-0.9 -5,-0.3 -2,-0.2 0.875 110.3 43.8 -67.4 -39.1 6.4 -2.8 -7.9 70 217 A A H X S+ 0 0 10 -4,-2.0 4,-1.0 2,-0.2 -2,-0.2 0.888 113.8 50.6 -72.2 -41.1 7.3 -4.6 -4.6 71 218 A C H >< S+ 0 0 13 -4,-2.1 3,-0.9 1,-0.2 -2,-0.2 0.922 109.0 51.5 -61.7 -45.4 3.6 -5.4 -3.9 72 219 A Q H 3< S+ 0 0 148 -4,-2.7 -1,-0.2 1,-0.3 -2,-0.2 0.776 106.0 56.8 -61.8 -27.1 3.3 -6.8 -7.4 73 220 A G H 3< S+ 0 0 30 -4,-0.9 -1,-0.3 -5,-0.1 -2,-0.2 0.746 81.8 114.0 -75.2 -25.4 6.4 -8.9 -6.6 74 221 A V S << S+ 0 0 56 -4,-1.0 -3,-0.0 -3,-0.9 -23,-0.0 -0.130 74.1 9.6 -47.5 140.7 4.6 -10.4 -3.6 75 222 A G S S- 0 0 50 2,-0.1 0, 0.0 1,-0.0 0, 0.0 0.163 128.5 -11.9 69.8 166.7 4.0 -14.1 -4.1 76 223 A G S S- 0 0 87 1,-0.1 -2,-0.1 2,-0.0 -1,-0.0 -0.068 82.7-153.8 -37.2 98.0 5.4 -16.3 -6.8 77 224 A P - 0 0 108 0, 0.0 2,-0.2 0, 0.0 -4,-0.1 -0.192 16.1-175.0 -75.0 170.7 6.7 -13.5 -9.1 78 225 A G + 0 0 74 3,-0.0 3,-0.1 -2,-0.0 -2,-0.0 -0.743 37.0 95.5-172.4 119.4 7.2 -13.8 -12.8 79 226 A H + 0 0 184 1,-0.5 0, 0.0 -2,-0.2 0, 0.0 0.029 51.0 93.6-164.2 -72.9 8.7 -11.4 -15.4 80 227 A K + 0 0 181 1,-0.0 -1,-0.5 2,-0.0 2,-0.2 -0.069 46.7 145.4 -41.0 134.6 12.3 -12.0 -16.4 81 228 A A + 0 0 87 -3,-0.1 2,-0.3 2,-0.0 -1,-0.0 -0.586 15.4 103.3 179.5 112.2 12.5 -14.2 -19.4 82 229 A R - 0 0 212 -2,-0.2 2,-0.3 0, 0.0 -2,-0.0 -0.955 50.4-113.0 179.6 169.0 14.9 -14.2 -22.3 83 230 A V 0 0 142 -2,-0.3 -2,-0.0 1,-0.1 0, 0.0 -0.916 360.0 360.0-122.4 148.5 18.0 -15.8 -23.8 84 231 A L 0 0 220 -2,-0.3 -1,-0.1 0, 0.0 0, 0.0 0.481 360.0 360.0-111.9 360.0 21.5 -14.5 -24.3