==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 14-DEC-07 2JYL . COMPND 2 MOLECULE: CAPSID PROTEIN P24 (CA); . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR H.C.WONG,R.SHIN,N.R.KRISHNA . 84 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7015.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 58.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 40.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 148 A T 0 0 159 0, 0.0 2,-0.2 0, 0.0 26,-0.0 0.000 360.0 360.0 360.0 20.1 -14.3 5.0 -5.0 2 149 A S > - 0 0 60 1,-0.1 3,-0.6 25,-0.0 4,-0.5 -0.535 360.0-108.9-101.6 169.7 -12.3 6.4 -2.1 3 150 A I G > S+ 0 0 39 1,-0.2 3,-0.9 2,-0.2 22,-0.1 0.753 116.7 68.2 -67.5 -24.4 -8.7 6.0 -1.2 4 151 A L G 3 S+ 0 0 130 1,-0.3 -1,-0.2 3,-0.0 17,-0.0 0.884 90.0 60.8 -61.2 -39.9 -9.9 3.8 1.6 5 152 A D G < S+ 0 0 108 -3,-0.6 2,-1.4 1,-0.1 -1,-0.3 0.772 86.1 88.6 -58.0 -26.0 -11.0 1.2 -0.9 6 153 A I < + 0 0 2 -3,-0.9 2,-0.3 -4,-0.5 -1,-0.1 -0.633 62.7 150.1 -78.7 94.2 -7.3 1.1 -1.9 7 154 A R - 0 0 161 -2,-1.4 2,-1.3 40,-0.0 40,-0.2 -0.830 56.7 -97.2-124.9 163.2 -6.0 -1.5 0.4 8 155 A Q - 0 0 10 38,-0.8 6,-0.1 -2,-0.3 43,-0.1 -0.682 45.9-150.9 -83.6 95.2 -3.2 -4.1 0.3 9 156 A G - 0 0 16 -2,-1.3 39,-0.1 4,-0.2 8,-0.1 -0.127 14.4-126.4 -61.7 161.8 -5.0 -7.2 -0.8 10 157 A P S S+ 0 0 135 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.950 111.1 23.3 -75.0 -53.3 -3.7 -10.7 0.3 11 158 A K S S+ 0 0 203 2,-0.1 -2,-0.1 0, 0.0 -3,-0.0 0.608 109.2 97.2 -86.8 -14.8 -3.5 -12.2 -3.2 12 159 A E S S- 0 0 56 1,-0.1 2,-0.1 2,-0.0 0, 0.0 -0.608 76.9-125.2 -79.8 133.1 -3.2 -8.7 -4.7 13 160 A P > - 0 0 67 0, 0.0 4,-1.8 0, 0.0 3,-0.3 -0.335 18.5-115.7 -75.0 158.4 0.3 -7.5 -5.4 14 161 A F H > S+ 0 0 14 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.824 115.4 61.2 -61.5 -33.0 1.7 -4.3 -4.0 15 162 A R H > S+ 0 0 202 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.916 105.9 44.7 -59.7 -45.9 2.0 -3.0 -7.6 16 163 A D H > S+ 0 0 88 -3,-0.3 4,-2.1 1,-0.2 -1,-0.2 0.858 113.1 52.6 -66.2 -36.4 -1.7 -3.4 -8.1 17 164 A Y H X S+ 0 0 0 -4,-1.8 4,-2.4 2,-0.2 -2,-0.2 0.886 111.2 45.5 -66.0 -41.0 -2.3 -1.8 -4.7 18 165 A V H X S+ 0 0 16 -4,-2.8 4,-3.3 2,-0.2 5,-0.3 0.893 110.2 54.4 -68.7 -41.4 -0.1 1.2 -5.6 19 166 A D H X S+ 0 0 82 -4,-2.5 4,-1.4 1,-0.2 -2,-0.2 0.905 112.0 44.5 -58.1 -43.8 -1.8 1.5 -8.9 20 167 A R H X S+ 0 0 140 -4,-2.1 4,-2.8 2,-0.2 5,-0.3 0.912 112.9 51.0 -66.8 -44.5 -5.1 1.7 -7.2 21 168 A F H X S+ 0 0 3 -4,-2.4 4,-2.2 1,-0.2 -2,-0.2 0.919 117.0 39.2 -58.6 -47.4 -3.8 4.1 -4.5 22 169 A Y H X S+ 0 0 96 -4,-3.3 4,-1.9 2,-0.2 -1,-0.2 0.709 113.2 58.6 -75.3 -21.7 -2.4 6.4 -7.2 23 170 A K H < S+ 0 0 109 -4,-1.4 -2,-0.2 -5,-0.3 4,-0.2 0.908 112.6 37.3 -72.8 -44.3 -5.5 5.8 -9.3 24 171 A T H X S+ 0 0 19 -4,-2.8 4,-0.8 2,-0.2 3,-0.4 0.866 114.0 56.8 -74.4 -38.7 -7.8 7.1 -6.7 25 172 A L H >X S+ 0 0 33 -4,-2.2 3,-1.0 -5,-0.3 4,-0.6 0.930 112.5 40.8 -57.3 -48.7 -5.4 9.8 -5.6 26 173 A R H 3< S+ 0 0 217 -4,-1.9 -1,-0.3 1,-0.2 -2,-0.2 0.560 102.1 74.5 -76.1 -8.8 -5.4 11.2 -9.1 27 174 A A H 34 S- 0 0 63 -3,-0.4 -1,-0.2 -4,-0.2 -2,-0.2 0.754 131.4 -15.1 -73.5 -25.5 -9.1 10.5 -9.2 28 175 A E H << S- 0 0 165 -3,-1.0 -2,-0.2 -4,-0.8 -1,-0.2 -0.013 74.6-159.8-172.8 46.5 -9.6 13.5 -7.0 29 176 A Q < + 0 0 140 -4,-0.6 2,-0.3 5,-0.0 -3,-0.1 -0.123 53.9 98.2 -40.6 99.5 -6.3 14.5 -5.5 30 177 A A + 0 0 74 -2,-0.1 2,-0.3 -5,-0.0 -2,-0.1 -0.922 38.7 168.8 179.6 159.4 -7.6 16.5 -2.5 31 178 A S > - 0 0 84 -2,-0.3 3,-0.8 1,-0.0 4,-0.2 -0.967 51.1 -96.6-173.0 166.4 -8.4 16.3 1.2 32 179 A Q T 3 S+ 0 0 196 -2,-0.3 4,-0.1 1,-0.3 3,-0.0 0.631 125.9 13.2 -68.5 -13.6 -9.3 18.3 4.2 33 180 A E T 3> + 0 0 126 2,-0.1 4,-3.2 1,-0.0 -1,-0.3 -0.310 69.6 154.6-161.8 65.1 -5.6 18.2 5.0 34 181 A V T <4 S+ 0 0 60 -3,-0.8 5,-0.3 2,-0.2 -2,-0.1 0.878 82.0 52.8 -62.7 -38.9 -3.5 17.0 2.1 35 182 A K T 4 S+ 0 0 208 1,-0.2 -1,-0.2 -4,-0.2 4,-0.1 0.970 117.9 34.5 -60.1 -57.0 -0.6 18.9 3.5 36 183 A N T 4 S+ 0 0 136 2,-0.1 2,-0.8 -4,-0.1 -2,-0.2 0.823 106.5 84.0 -67.0 -32.1 -0.8 17.3 6.9 37 184 A A S < S- 0 0 29 -4,-3.2 2,-1.1 1,-0.1 3,-0.1 -0.652 75.8-149.8 -77.6 111.1 -2.0 14.1 5.2 38 185 A A >> - 0 0 48 -2,-0.8 4,-1.8 1,-0.2 3,-0.9 -0.724 1.0-156.4 -86.1 99.2 1.2 12.3 4.1 39 186 A T H >> S+ 0 0 69 -2,-1.1 4,-2.3 -5,-0.3 3,-1.0 0.878 96.5 50.5 -37.4 -56.0 0.1 10.4 1.0 40 187 A E H 3> S+ 0 0 61 1,-0.3 4,-2.4 2,-0.2 -1,-0.3 0.886 108.2 52.6 -51.7 -43.5 2.9 8.0 1.6 41 188 A T H <> S+ 0 0 56 -3,-0.9 4,-2.8 1,-0.2 -1,-0.3 0.778 107.5 53.8 -63.8 -27.3 1.7 7.6 5.1 42 189 A L H < S+ 0 0 16 -4,-2.4 3,-1.0 -5,-0.2 -2,-0.2 0.925 119.2 44.7 -68.4 -46.5 1.4 2.6 4.4 45 192 A Q H 3< S+ 0 0 107 -4,-2.8 -2,-0.2 1,-0.3 -3,-0.2 0.892 117.1 44.9 -64.1 -41.4 -1.5 3.2 6.7 46 193 A N T 3< S+ 0 0 27 -4,-4.6 -38,-0.8 -5,-0.1 -1,-0.3 0.348 104.5 93.8 -83.5 5.8 -4.0 1.9 4.2 47 194 A A S < S- 0 0 9 -3,-1.0 -3,-0.1 1,-0.2 5,-0.1 -0.473 91.1 -76.1 -94.4 168.1 -1.5 -0.9 3.6 48 195 A N > - 0 0 42 -2,-0.2 4,-0.9 -39,-0.1 -1,-0.2 0.115 45.1-108.4 -52.1 175.9 -1.5 -4.3 5.3 49 196 A P H > S+ 0 0 84 0, 0.0 4,-2.1 0, 0.0 5,-0.2 0.960 117.1 43.7 -75.0 -55.8 -0.3 -4.7 8.9 50 197 A D H > S+ 0 0 95 1,-0.3 4,-3.0 2,-0.2 5,-0.3 0.924 114.1 51.6 -54.5 -48.4 3.0 -6.5 8.2 51 198 A C H > S+ 0 0 0 1,-0.3 4,-3.0 2,-0.2 -1,-0.3 0.859 107.0 55.6 -56.6 -36.4 3.7 -4.1 5.3 52 199 A K H X S+ 0 0 79 -4,-0.9 4,-2.1 2,-0.2 -1,-0.3 0.910 109.5 45.1 -62.3 -43.9 3.0 -1.4 7.8 53 200 A T H X S+ 0 0 96 -4,-2.1 4,-2.0 2,-0.2 -2,-0.2 0.915 115.3 46.5 -65.6 -45.2 5.7 -2.8 10.1 54 201 A I H X S+ 0 0 48 -4,-3.0 4,-1.9 1,-0.2 -2,-0.2 0.867 114.6 48.3 -64.3 -37.5 8.1 -3.2 7.3 55 202 A L H X S+ 0 0 8 -4,-3.0 4,-1.2 -5,-0.3 -1,-0.2 0.830 107.5 56.2 -70.9 -33.3 7.2 0.3 6.1 56 203 A K H < S+ 0 0 166 -4,-2.1 -2,-0.2 1,-0.2 -1,-0.2 0.881 110.9 43.5 -65.0 -39.5 7.7 1.6 9.6 57 204 A A H < S+ 0 0 87 -4,-2.0 -2,-0.2 -5,-0.1 -1,-0.2 0.834 104.7 69.7 -73.7 -34.1 11.2 0.1 9.6 58 205 A L H < S- 0 0 45 -4,-1.9 -2,-0.2 -5,-0.2 -3,-0.1 0.943 108.1 -90.3 -44.8 -84.9 11.8 1.5 6.2 59 206 A G >< - 0 0 25 -4,-1.2 2,-2.7 3,-0.0 3,-1.0 -0.870 29.4 -84.6 171.0 157.8 11.9 5.2 6.9 60 207 A P T 3 S+ 0 0 154 0, 0.0 -4,-0.1 0, 0.0 -19,-0.1 -0.301 125.5 21.6 -75.0 56.5 9.9 8.4 7.2 61 208 A G T 3 S+ 0 0 60 -2,-2.7 2,-0.1 -21,-0.1 -20,-0.0 0.399 82.2 170.1 147.4 50.8 10.1 8.9 3.4 62 209 A A < - 0 0 15 -3,-1.0 2,-0.2 -7,-0.1 -3,-0.0 -0.403 33.4-111.3 -80.2 159.5 10.9 5.7 1.6 63 210 A T >> - 0 0 85 -2,-0.1 4,-3.0 1,-0.1 3,-0.8 -0.571 25.8-109.4 -91.5 155.9 10.8 5.4 -2.2 64 211 A L H 3> S+ 0 0 55 1,-0.3 4,-3.1 2,-0.2 5,-0.3 0.865 123.3 55.6 -48.1 -40.6 8.3 3.4 -4.1 65 212 A E H 3> S+ 0 0 158 1,-0.2 4,-1.9 2,-0.2 -1,-0.3 0.891 110.1 44.2 -60.1 -42.0 11.1 1.0 -4.9 66 213 A E H <> S+ 0 0 93 -3,-0.8 4,-2.1 2,-0.2 -2,-0.2 0.866 113.7 50.9 -70.4 -38.2 11.8 0.6 -1.2 67 214 A M H X S+ 0 0 5 -4,-3.0 4,-2.2 2,-0.2 -2,-0.2 0.902 114.3 42.9 -65.4 -43.4 8.1 0.2 -0.4 68 215 A M H X S+ 0 0 69 -4,-3.1 4,-2.7 -5,-0.2 -2,-0.2 0.826 112.3 54.6 -71.6 -33.4 7.7 -2.4 -3.1 69 216 A T H X S+ 0 0 78 -4,-1.9 4,-0.7 -5,-0.3 -2,-0.2 0.876 112.0 43.3 -67.0 -39.4 10.9 -4.1 -2.0 70 217 A A H X S+ 0 0 8 -4,-2.1 4,-1.7 2,-0.2 3,-0.4 0.893 113.7 50.8 -72.3 -41.8 9.7 -4.4 1.6 71 218 A C H < S+ 0 0 7 -4,-2.2 3,-0.2 1,-0.3 -2,-0.2 0.913 107.6 53.5 -61.2 -44.0 6.2 -5.5 0.5 72 219 A Q H < S+ 0 0 153 -4,-2.7 -1,-0.3 1,-0.2 -2,-0.2 0.757 107.3 53.8 -61.6 -25.0 7.8 -8.1 -1.7 73 220 A G H < S+ 0 0 59 -4,-0.7 -1,-0.2 -3,-0.4 -2,-0.2 0.845 82.4 110.4 -77.4 -36.6 9.6 -9.2 1.4 74 221 A V S < S- 0 0 35 -4,-1.7 -3,-0.0 -3,-0.2 -23,-0.0 -0.006 75.5-110.9 -39.3 142.1 6.4 -9.6 3.4 75 222 A G + 0 0 61 1,-0.1 -1,-0.0 3,-0.0 -25,-0.0 0.236 53.2 134.0 -63.4-166.1 5.7 -13.2 4.2 76 223 A G + 0 0 66 2,-0.0 2,-0.5 0, 0.0 -1,-0.1 -0.982 56.1 6.3 158.0-146.5 2.8 -15.2 2.6 77 224 A P + 0 0 123 0, 0.0 5,-0.0 0, 0.0 2,-0.0 -0.600 61.2 148.4 -75.0 119.7 2.2 -18.6 1.0 78 225 A G + 0 0 70 -2,-0.5 2,-0.3 0, 0.0 -2,-0.0 -0.466 42.0 63.8-153.2 72.0 5.3 -20.8 1.2 79 226 A H S S- 0 0 167 1,-0.2 4,-0.2 -2,-0.0 0, 0.0 -0.965 73.2-111.0-175.4 174.3 4.5 -24.4 1.5 80 227 A K S S+ 0 0 194 -2,-0.3 -1,-0.2 2,-0.1 3,-0.1 0.950 87.0 89.4 -84.5 -63.8 3.0 -27.4 -0.3 81 228 A A S S- 0 0 67 1,-0.2 3,-0.1 3,-0.0 0, 0.0 -0.117 98.3-104.7 -39.9 108.3 -0.1 -28.1 1.9 82 229 A R - 0 0 240 1,-0.1 -1,-0.2 2,-0.1 -2,-0.1 -0.138 40.9-110.9 -43.0 120.8 -2.6 -25.9 0.1 83 230 A V 0 0 104 1,-0.2 -1,-0.1 -4,-0.2 -4,-0.0 -0.244 360.0 360.0 -57.3 144.2 -3.1 -22.9 2.3 84 231 A L 0 0 210 -3,-0.1 -1,-0.2 0, 0.0 -2,-0.1 0.547 360.0 360.0 -40.5 360.0 -6.5 -22.7 3.9