==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER HYDROLASE 19-DEC-07 2JYS . COMPND 2 MOLECULE: PROTEASE/REVERSE TRANSCRIPTASE; . SOURCE 2 ORGANISM_SCIENTIFIC: SIMIAN FOAMY VIRUS TYPE 1; . AUTHOR M.J.HARTL,B.M.WOEHRL,P.ROESCH,K.SCHWEIMER . 91 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6609.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 56.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 9 9.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 26 28.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 3.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 6.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 4 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 8 A Q 0 0 221 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 98.8 -13.8 -24.8 -24.9 2 9 A P - 0 0 59 0, 0.0 13,-0.2 0, 0.0 2,-0.1 -0.364 360.0-124.8 -70.2 147.6 -14.1 -24.1 -21.2 3 10 A L E -A 14 0A 34 11,-3.5 11,-3.2 -2,-0.1 2,-0.4 -0.445 21.6-114.2 -88.8 167.5 -16.9 -25.8 -19.2 4 11 A E E +A 13 0A 122 9,-0.2 56,-1.3 -2,-0.1 2,-0.3 -0.836 40.0 163.2-104.4 139.6 -19.5 -24.0 -17.1 5 12 A A E -AB 12 59A 6 7,-2.1 7,-2.7 -2,-0.4 2,-0.5 -0.997 26.9-143.6-151.3 152.8 -19.6 -24.3 -13.3 6 13 A E E -AB 11 58A 58 52,-2.0 52,-2.5 -2,-0.3 2,-0.5 -0.959 14.2-170.4-123.8 120.4 -21.2 -22.5 -10.3 7 14 A I E > S-AB 10 57A 2 3,-3.0 3,-3.8 -2,-0.5 50,-0.2 -0.919 75.9 -17.5-111.7 128.5 -19.4 -22.2 -7.0 8 15 A K T 3 S- 0 0 96 48,-1.8 -1,-0.2 -2,-0.5 49,-0.1 0.839 130.8 -52.9 50.8 29.6 -21.2 -20.8 -3.9 9 16 A G T 3 S+ 0 0 51 1,-0.3 2,-0.4 -3,-0.1 -1,-0.3 0.308 113.6 127.8 89.4 -12.1 -23.7 -19.4 -6.4 10 17 A T E < -A 7 0A 61 -3,-3.8 -3,-3.0 -4,-0.0 2,-0.6 -0.636 53.2-143.6 -80.6 130.0 -20.9 -17.8 -8.4 11 18 A K E +A 6 0A 128 -2,-0.4 2,-0.3 -5,-0.3 -5,-0.2 -0.814 35.3 147.6 -96.6 125.4 -20.9 -18.6 -12.1 12 19 A L E -A 5 0A 64 -7,-2.7 -7,-2.1 -2,-0.6 2,-0.2 -0.937 47.1 -94.1-147.2 169.8 -17.5 -19.1 -13.7 13 20 A K E -A 4 0A 142 -2,-0.3 63,-0.9 -9,-0.2 2,-0.3 -0.563 39.0-169.2 -87.3 153.9 -15.8 -21.1 -16.5 14 21 A A E -Ac 3 76A 1 -11,-3.2 -11,-3.5 -2,-0.2 2,-0.4 -0.885 14.2-135.2-136.4 168.8 -14.0 -24.4 -15.7 15 22 A H E - c 0 77A 75 61,-1.8 63,-2.5 -2,-0.3 2,-0.5 -0.987 13.7-136.3-131.1 131.4 -11.7 -26.8 -17.5 16 23 A W E + c 0 78A 69 -2,-0.4 2,-0.4 61,-0.2 63,-0.2 -0.711 27.4 173.0 -86.3 126.9 -11.9 -30.6 -17.5 17 24 A D > - 0 0 63 61,-2.2 3,-1.7 -2,-0.5 -2,-0.0 -0.860 22.5-168.3-137.7 103.9 -8.5 -32.3 -17.1 18 25 A S T 3 S+ 0 0 67 -2,-0.4 -1,-0.1 1,-0.3 63,-0.1 0.843 89.6 68.8 -59.6 -29.2 -8.3 -36.1 -16.6 19 26 A G T 3 S+ 0 0 78 -3,-0.1 2,-0.4 60,-0.1 -1,-0.3 0.829 87.6 79.1 -60.3 -27.4 -4.7 -35.6 -15.6 20 27 A A < - 0 0 27 -3,-1.7 61,-0.3 58,-0.2 -3,-0.1 -0.672 59.6-171.9 -84.0 131.2 -6.0 -33.9 -12.4 21 28 A T S S+ 0 0 113 -2,-0.4 2,-0.4 58,-0.2 -1,-0.1 0.591 73.6 43.0 -96.7 -11.6 -7.2 -36.4 -9.8 22 29 A I S S- 0 0 41 56,-0.1 -1,-0.1 59,-0.1 46,-0.1 -0.983 93.4-102.1-134.2 145.5 -8.7 -33.7 -7.5 23 30 A T E -d 68 0A 0 44,-0.6 46,-1.6 -2,-0.4 2,-0.5 -0.364 36.5-153.2 -63.6 141.0 -10.7 -30.6 -8.4 24 31 A C E +dE 69 77A 27 53,-2.5 53,-4.1 44,-0.3 46,-0.2 -0.963 16.6 175.6-121.5 128.4 -8.6 -27.4 -8.3 25 32 A V E -d 70 0A 2 44,-2.5 46,-1.3 -2,-0.5 2,-0.2 -0.867 34.9 -96.4-127.8 163.3 -10.1 -23.9 -7.6 26 33 A P E > -d 71 0A 11 0, 0.0 3,-3.4 0, 0.0 4,-0.5 -0.548 32.3-118.6 -79.1 139.0 -8.7 -20.4 -7.1 27 34 A E G >> S+ 0 0 111 44,-1.1 3,-2.3 1,-0.3 4,-2.0 0.800 107.2 85.2 -46.9 -24.7 -8.0 -19.1 -3.6 28 35 A A G 34 S+ 0 0 77 43,-0.3 -1,-0.3 1,-0.3 4,-0.2 0.805 94.1 43.3 -50.5 -24.5 -10.6 -16.5 -4.5 29 36 A F G <4 S+ 0 0 19 -3,-3.4 -1,-0.3 1,-0.1 -2,-0.2 0.561 120.0 41.2 -97.9 -8.9 -13.1 -19.1 -3.4 30 37 A L T X4 S+ 0 0 10 -3,-2.3 3,-1.6 -4,-0.5 -2,-0.2 0.367 81.3 101.7-116.5 2.8 -11.1 -20.1 -0.3 31 38 A E T 3< S+ 0 0 149 -4,-2.0 -3,-0.1 1,-0.3 -2,-0.1 0.929 102.7 22.8 -53.8 -42.9 -10.1 -16.6 0.8 32 39 A D T 3 S+ 0 0 138 -4,-0.2 -1,-0.3 -5,-0.2 2,-0.1 0.057 116.0 88.3-110.8 25.4 -12.8 -16.7 3.5 33 40 A E < - 0 0 73 -3,-1.6 -3,-0.1 -6,-0.2 22,-0.0 -0.383 68.0-129.4-108.8-169.2 -13.1 -20.6 3.6 34 41 A R - 0 0 197 -2,-0.1 20,-0.4 20,-0.1 2,-0.3 -0.964 17.1-121.2-149.6 129.3 -11.2 -23.2 5.7 35 42 A P - 0 0 42 0, 0.0 18,-0.3 0, 0.0 3,-0.1 -0.515 13.5-159.5 -70.8 124.4 -9.4 -26.4 4.5 36 43 A I S S+ 0 0 86 16,-1.0 2,-0.3 -2,-0.3 17,-0.1 0.886 78.0 8.4 -72.6 -36.1 -10.9 -29.5 6.2 37 44 A Q E -G 52 0B 117 15,-1.0 15,-3.1 2,-0.0 2,-0.3 -0.925 69.8-144.4-139.4 164.9 -7.7 -31.5 5.5 38 45 A T E -G 51 0B 75 -2,-0.3 2,-0.4 13,-0.3 13,-0.3 -0.881 7.3-144.6-128.8 162.5 -4.2 -30.9 4.2 39 46 A M E -G 50 0B 77 11,-3.2 11,-2.7 -2,-0.3 2,-0.5 -0.966 11.6-134.6-128.8 145.1 -1.7 -32.8 2.1 40 47 A L E -G 49 0B 111 -2,-0.4 2,-0.4 9,-0.3 9,-0.3 -0.841 22.9-175.4-100.6 128.7 2.1 -33.0 2.3 41 48 A I E -G 48 0B 75 7,-3.4 7,-3.4 -2,-0.5 2,-0.5 -0.974 14.1-147.5-125.0 133.3 4.0 -32.7 -1.0 42 49 A K E -G 47 0B 180 -2,-0.4 2,-0.3 5,-0.3 5,-0.3 -0.835 20.7-179.9-100.4 131.0 7.8 -33.1 -1.4 43 50 A T - 0 0 43 3,-2.5 -2,-0.0 -2,-0.5 0, 0.0 -0.849 41.1-112.2-125.1 163.3 9.6 -31.0 -4.0 44 51 A I S S+ 0 0 180 -2,-0.3 3,-0.1 1,-0.2 -1,-0.1 0.912 120.9 48.6 -61.6 -39.0 13.2 -30.7 -5.1 45 52 A H S S- 0 0 165 1,-0.2 2,-0.3 -3,-0.0 -1,-0.2 0.878 133.2 -61.9 -69.6 -34.3 13.3 -27.1 -3.8 46 53 A G - 0 0 29 2,-0.0 -3,-2.5 -5,-0.0 2,-0.5 -0.985 66.3 -57.5 172.9-172.1 11.8 -28.2 -0.5 47 54 A E E -G 42 0B 126 -2,-0.3 2,-0.4 -5,-0.3 -5,-0.3 -0.811 49.0-173.7 -97.0 129.1 8.7 -29.8 1.1 48 55 A K E -G 41 0B 114 -7,-3.4 -7,-3.4 -2,-0.5 2,-0.4 -0.927 13.1-145.7-122.0 147.0 5.3 -28.0 0.5 49 56 A Q E -G 40 0B 123 -2,-0.4 2,-0.5 -9,-0.3 -9,-0.3 -0.913 7.9-150.7-113.1 135.9 1.9 -28.8 1.9 50 57 A Q E -G 39 0B 79 -11,-2.7 -11,-3.2 -2,-0.4 2,-0.2 -0.887 13.4-137.7-106.7 128.9 -1.4 -28.3 -0.0 51 58 A D E -G 38 0B 61 -2,-0.5 2,-0.5 -13,-0.3 19,-0.4 -0.502 13.6-139.7 -81.0 152.4 -4.5 -27.5 1.9 52 59 A V E -G 37 0B 0 -15,-3.1 -16,-1.0 -2,-0.2 -15,-1.0 -0.936 15.1-167.9-115.3 132.0 -7.8 -29.2 0.9 53 60 A Y E - F 0 68A 27 15,-2.1 15,-4.2 -2,-0.5 2,-0.8 -0.960 13.8-146.4-121.4 131.7 -11.2 -27.4 0.8 54 61 A Y E + F 0 67A 100 -2,-0.5 2,-0.3 -20,-0.4 13,-0.3 -0.809 33.3 164.9 -95.9 109.0 -14.6 -29.0 0.5 55 62 A L E - F 0 66A 9 11,-2.1 11,-2.0 -2,-0.8 2,-0.5 -0.771 33.1-127.4-120.6 168.4 -16.9 -26.7 -1.5 56 63 A T E + F 0 65A 43 -2,-0.3 -48,-1.8 9,-0.2 2,-0.3 -0.955 36.0 156.9-118.0 125.9 -20.2 -27.1 -3.3 57 64 A F E -BF 7 64A 5 7,-2.4 7,-2.2 -2,-0.5 2,-0.5 -0.987 41.7-110.7-145.2 155.2 -20.6 -26.1 -6.9 58 65 A K E -BF 6 63A 91 -52,-2.5 -52,-2.0 -2,-0.3 2,-0.9 -0.732 24.3-152.6 -89.0 129.2 -22.9 -26.9 -9.8 59 66 A V E S-B 5 0A 5 3,-3.4 -54,-0.2 -2,-0.5 -1,-0.0 -0.799 78.0 -29.5-103.3 97.8 -21.3 -28.9 -12.7 60 67 A Q S S- 0 0 83 -56,-1.3 -1,-0.2 -2,-0.9 -55,-0.1 0.926 132.9 -38.1 65.0 41.1 -23.1 -28.1 -15.9 61 68 A G S S+ 0 0 72 1,-0.2 2,-0.4 -3,-0.1 -1,-0.2 0.851 118.6 116.4 78.2 32.9 -26.4 -27.5 -14.0 62 69 A R - 0 0 110 2,-0.1 -3,-3.4 0, 0.0 -1,-0.2 -0.897 65.7-131.1-137.6 108.6 -25.7 -30.4 -11.6 63 70 A K E + F 0 58A 151 -2,-0.4 2,-0.3 -5,-0.3 -5,-0.2 -0.362 41.7 161.6 -58.1 122.5 -25.2 -29.7 -7.8 64 71 A V E - F 0 57A 30 -7,-2.2 -7,-2.4 -2,-0.2 2,-0.4 -0.985 26.0-153.9-147.7 134.2 -22.0 -31.5 -6.8 65 72 A E E + F 0 56A 87 -2,-0.3 2,-0.3 -9,-0.2 -9,-0.2 -0.881 26.5 149.2-110.6 140.5 -19.7 -31.1 -3.8 66 73 A A E - F 0 55A 16 -11,-2.0 -11,-2.1 -2,-0.4 2,-0.3 -0.991 48.7 -90.3-160.1 162.8 -16.0 -32.1 -3.8 67 74 A E E - F 0 54A 53 -2,-0.3 -44,-0.6 -13,-0.3 2,-0.3 -0.614 44.1-172.6 -80.9 136.3 -12.7 -31.1 -2.2 68 75 A V E -dF 23 53A 0 -15,-4.2 -15,-2.1 -2,-0.3 2,-0.3 -0.949 17.3-131.9-129.5 150.9 -10.7 -28.5 -4.2 69 76 A L E -d 24 0A 17 -46,-1.6 -44,-2.5 -2,-0.3 2,-0.3 -0.737 27.7-111.3-100.4 150.2 -7.2 -27.1 -3.8 70 77 A A E +d 25 0A 24 -19,-0.4 -19,-0.1 -2,-0.3 -1,-0.0 -0.604 42.5 174.0 -80.0 135.6 -6.4 -23.3 -3.8 71 78 A S E -d 26 0A 17 -46,-1.3 -44,-1.1 -2,-0.3 -43,-0.3 -0.993 43.3-123.3-142.9 150.2 -4.5 -22.1 -6.9 72 79 A P S S+ 0 0 105 0, 0.0 -2,-0.0 0, 0.0 -1,-0.0 0.442 77.7 115.1 -70.8 2.3 -3.3 -18.8 -8.3 73 80 A Y S S- 0 0 124 -48,-0.1 -2,-0.1 1,-0.1 -46,-0.1 -0.128 71.3-130.4 -66.0 171.2 -5.1 -19.6 -11.5 74 81 A D S S+ 0 0 158 -48,-0.1 2,-0.2 2,-0.1 -1,-0.1 0.137 84.2 38.3-111.0 20.5 -8.1 -17.5 -12.6 75 82 A Y S S- 0 0 61 -63,-0.1 2,-0.3 -4,-0.0 -61,-0.2 -0.681 86.6 -90.5-145.5-159.9 -10.5 -20.4 -13.3 76 83 A I E -c 14 0A 2 -63,-0.9 -61,-1.8 -2,-0.2 2,-0.5 -0.909 22.6-143.8-125.2 154.4 -11.5 -23.8 -11.9 77 84 A L E -cE 15 24A 17 -53,-4.1 -53,-2.5 -2,-0.3 2,-0.4 -0.960 12.3-159.9-120.0 126.5 -10.1 -27.3 -12.6 78 85 A L E -c 16 0A 3 -63,-2.5 -61,-2.2 -2,-0.5 -58,-0.2 -0.835 8.8-145.1-105.6 142.0 -12.5 -30.4 -12.6 79 86 A N > - 0 0 10 -2,-0.4 4,-2.0 -63,-0.2 -61,-0.2 -0.654 21.2-120.4-102.3 161.8 -11.2 -34.0 -12.3 80 87 A P T 4 S+ 0 0 21 0, 0.0 7,-0.2 0, 0.0 -59,-0.1 0.724 111.7 58.3 -71.6 -21.6 -12.6 -37.1 -13.9 81 88 A S T 4 S+ 0 0 91 -61,-0.3 -60,-0.1 1,-0.1 -59,-0.1 0.862 110.4 41.2 -77.8 -34.1 -13.3 -38.7 -10.5 82 89 A D T 4 S+ 0 0 18 1,-0.2 3,-0.2 -3,-0.1 -1,-0.1 0.900 122.8 39.3 -80.0 -40.7 -15.6 -35.8 -9.4 83 90 A V X + 0 0 0 -4,-2.0 4,-0.7 1,-0.2 -1,-0.2 -0.559 67.3 151.2-109.3 70.0 -17.3 -35.5 -12.8 84 91 A P H > S+ 0 0 68 0, 0.0 4,-0.7 0, 0.0 -1,-0.2 0.729 71.3 59.0 -70.5 -22.2 -17.7 -39.2 -13.9 85 92 A W H >4 S+ 0 0 57 -3,-0.2 3,-0.6 1,-0.2 -2,-0.1 0.845 91.4 68.2 -77.3 -31.7 -20.8 -38.4 -15.9 86 93 A L H 34 S+ 0 0 48 1,-0.3 -1,-0.2 -3,-0.2 -70,-0.0 0.915 95.5 56.2 -54.2 -41.0 -18.9 -35.9 -18.1 87 94 A M H 3< S+ 0 0 122 -4,-0.7 2,-0.3 -7,-0.2 -1,-0.3 0.895 102.8 65.6 -60.1 -36.6 -17.0 -38.9 -19.6 88 95 A K S << S- 0 0 164 -4,-0.7 0, 0.0 -3,-0.6 0, 0.0 -0.628 99.5-105.4 -86.9 145.1 -20.3 -40.5 -20.6 89 96 A K - 0 0 192 -2,-0.3 2,-0.1 1,-0.1 -1,-0.1 -0.408 39.8-106.1 -68.9 144.9 -22.5 -38.8 -23.2 90 97 A P 0 0 112 0, 0.0 -1,-0.1 0, 0.0 -4,-0.0 -0.384 360.0 360.0 -70.1 145.1 -25.6 -37.0 -21.8 91 98 A L 0 0 221 -2,-0.1 -2,-0.0 0, 0.0 0, 0.0 0.743 360.0 360.0-111.6 360.0 -29.0 -38.7 -22.4