==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CYTOKINE 19-DEC-07 2JYU . COMPND 2 MOLECULE: GRANULIN-5; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR D.TOLKATCHEV,P.WANG,Z.CHEN,P.XU,F.NI . 67 1 4 4 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6515.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 18 26.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 8 11.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 7.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A V 0 0 122 0, 0.0 2,-1.0 0, 0.0 8,-0.2 0.000 360.0 360.0 360.0 73.1 14.5 3.9 -5.2 2 2 A P + 0 0 124 0, 0.0 3,-0.1 0, 0.0 6,-0.0 -0.651 360.0 134.9 -80.8 100.1 17.7 5.5 -3.8 3 3 A a > - 0 0 4 -2,-1.0 4,-0.5 1,-0.7 3,-0.2 -0.448 68.9 -86.5-145.3 65.8 19.1 3.1 -1.3 4 4 A D T 4 - 0 0 102 1,-0.2 -1,-0.7 2,-0.1 18,-0.0 0.008 46.9 -90.5 58.5-170.8 22.9 2.8 -1.9 5 5 A N T 4 S+ 0 0 150 -3,-0.1 3,-0.2 3,-0.1 -1,-0.2 0.247 109.3 78.2-119.7 8.1 24.4 0.4 -4.4 6 6 A V T 4 S+ 0 0 94 1,-0.3 2,-0.4 -3,-0.2 -2,-0.1 0.935 109.2 7.5 -82.0 -52.8 24.8 -2.6 -2.1 7 7 A S S < S+ 0 0 57 -4,-0.5 -1,-0.3 16,-0.1 2,-0.1 -0.909 73.5 179.8-138.3 108.6 21.2 -3.9 -2.0 8 8 A S - 0 0 79 -2,-0.4 17,-0.1 -3,-0.2 -3,-0.1 -0.256 30.8-110.7 -95.0-175.0 18.5 -2.4 -4.2 9 9 A b - 0 0 14 -8,-0.2 4,-0.3 4,-0.1 6,-0.1 -0.886 33.6-170.1-125.6 100.3 14.8 -3.2 -4.6 10 10 A P + 0 0 96 0, 0.0 4,-0.0 0, 0.0 0, 0.0 -0.358 51.3 8.3 -84.2 166.3 13.7 -4.9 -7.9 11 11 A S S S- 0 0 117 1,-0.2 2,-2.0 -2,-0.1 -2,-0.0 -0.018 124.5 -21.6 57.5-167.6 10.2 -5.6 -9.1 12 12 A S S S+ 0 0 108 2,-0.0 2,-0.3 0, 0.0 -1,-0.2 -0.508 104.8 114.5 -74.3 82.1 7.2 -4.1 -7.3 13 13 A D - 0 0 62 -2,-2.0 2,-0.4 -4,-0.3 -4,-0.1 -0.848 57.5-122.3-141.7 176.8 8.9 -3.5 -3.9 14 14 A T E -A 26 0A 62 12,-0.5 12,-2.5 -2,-0.3 2,-0.5 -0.974 21.8-121.1-129.6 142.5 10.0 -0.8 -1.6 15 15 A a E -A 25 0A 25 -2,-0.4 2,-0.3 10,-0.2 10,-0.2 -0.705 31.1-167.5 -84.9 122.6 13.4 0.1 -0.1 16 16 A C E -A 24 0A 39 8,-2.3 8,-2.5 -2,-0.5 2,-0.2 -0.827 13.8-128.3-111.0 149.4 13.5 -0.0 3.7 17 17 A Q E -A 23 0A 134 -2,-0.3 6,-0.2 6,-0.2 2,-0.2 -0.524 20.9-159.7 -92.5 161.6 16.2 1.3 6.0 18 18 A L - 0 0 96 4,-0.9 3,-0.2 -2,-0.2 -1,-0.1 -0.509 30.9-105.4-124.5-167.0 18.0 -0.6 8.8 19 19 A T S S+ 0 0 131 -2,-0.2 4,-0.1 1,-0.1 -2,-0.0 -0.064 106.4 64.3-115.6 30.7 20.0 0.1 12.0 20 20 A S S S- 0 0 103 2,-0.4 -1,-0.1 0, 0.0 3,-0.1 0.119 116.7 -96.5-137.1 18.3 23.4 -0.8 10.6 21 21 A G S S+ 0 0 71 1,-0.3 2,-0.3 -3,-0.2 -2,-0.1 0.660 92.6 114.4 73.0 15.4 23.9 1.8 7.9 22 22 A E - 0 0 99 -16,-0.0 -4,-0.9 -18,-0.0 2,-0.4 -0.908 57.2-140.9-120.8 147.8 22.6 -0.7 5.3 23 23 A W E +A 17 0A 84 -2,-0.3 -6,-0.2 -6,-0.2 2,-0.2 -0.865 22.8 176.1-109.4 141.1 19.4 -0.7 3.2 24 24 A G E -A 16 0A 15 -8,-2.5 -8,-2.3 -2,-0.4 2,-0.3 -0.673 31.6 -88.3-130.3-174.8 17.3 -3.7 2.3 25 25 A b E -A 15 0A 52 -10,-0.2 -10,-0.2 -2,-0.2 -16,-0.1 -0.787 33.4-127.1-102.3 143.5 14.1 -4.7 0.6 26 26 A C E -A 14 0A 31 -12,-2.5 -12,-0.5 -2,-0.3 -11,-0.0 -0.762 5.5-154.9 -91.5 127.8 10.7 -4.8 2.2 27 27 A P S S+ 0 0 113 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.324 88.8 62.8 -81.5 8.8 8.7 -8.0 1.9 28 28 A I + 0 0 115 -14,-0.1 2,-1.1 2,-0.1 -15,-0.1 -0.455 54.8 151.3-132.0 61.3 5.4 -6.1 2.3 29 29 A P + 0 0 46 0, 0.0 2,-0.2 0, 0.0 -1,-0.0 -0.331 55.4 71.8 -88.8 53.5 5.2 -3.7 -0.7 30 30 A E + 0 0 144 -2,-1.1 -2,-0.1 2,-0.1 -17,-0.0 -0.737 50.9 75.0-145.7-166.9 1.4 -3.6 -0.7 31 31 A A - 0 0 83 -2,-0.2 2,-0.1 2,-0.0 15,-0.0 0.460 67.1-104.2 66.9 146.3 -1.7 -2.3 1.2 32 32 A V - 0 0 30 11,-0.2 14,-0.1 2,-0.1 11,-0.1 -0.225 19.8-167.4 -92.1-175.2 -2.8 1.3 1.1 33 33 A C + 0 0 110 9,-0.1 2,-0.5 -2,-0.1 10,-0.1 0.167 49.1 114.8-159.8 16.0 -2.6 4.1 3.7 34 34 A c + 0 0 22 11,-0.3 11,-0.3 1,-0.2 10,-0.1 -0.848 19.5 117.0-101.5 129.7 -4.9 6.8 2.4 35 35 A S >> - 0 0 32 -2,-0.5 4,-1.1 8,-0.1 5,-0.7 0.344 56.3-140.9-157.2 -29.7 -8.0 7.8 4.4 36 36 A D T 45S- 0 0 119 1,-0.2 -2,-0.1 2,-0.2 4,-0.0 0.938 78.3 -51.7 55.3 51.6 -7.6 11.4 5.4 37 37 A H T 45S- 0 0 175 1,-0.1 -1,-0.2 2,-0.1 -3,-0.0 0.815 105.1 -63.8 55.9 31.6 -9.1 10.8 8.9 38 38 A Q T 45S+ 0 0 127 -3,-0.3 -2,-0.2 3,-0.2 -1,-0.1 0.974 101.2 122.2 55.9 87.3 -12.0 9.1 7.0 39 39 A H T <5S- 0 0 164 -4,-1.1 -3,-0.1 2,-0.1 -2,-0.1 0.464 83.9 -1.4-142.7 -33.3 -13.6 12.0 5.0 40 40 A C S - 0 0 50 0, 0.0 3,-0.9 0, 0.0 -8,-0.2 0.309 50.4 -68.6 -67.5-157.5 -11.3 5.1 3.5 43 43 A Q T 3 S+ 0 0 129 1,-0.2 -11,-0.2 -10,-0.1 -8,-0.1 0.151 117.6 85.9 -85.2 20.1 -8.8 2.2 3.5 44 44 A G T 3 S+ 0 0 40 -10,-0.1 2,-0.3 11,-0.0 -1,-0.2 0.636 93.7 32.0 -93.2 -16.8 -11.0 0.4 1.0 45 45 A Y S < S- 0 0 109 -3,-0.9 -11,-0.3 -11,-0.3 2,-0.3 -0.817 82.8-105.5-133.3 172.7 -9.4 2.1 -2.0 46 46 A T E -B 54 0B 33 8,-0.8 8,-2.1 -2,-0.3 2,-1.0 -0.738 29.6-115.5-102.5 151.0 -6.1 3.5 -3.2 47 47 A c E -B 53 0B 75 -2,-0.3 2,-0.4 6,-0.2 6,-0.2 -0.737 39.8-179.1 -88.3 102.5 -5.1 7.2 -3.5 48 48 A V - 0 0 86 -2,-1.0 3,-0.2 4,-0.7 2,-0.1 -0.821 24.3-121.1-105.0 142.2 -4.5 7.8 -7.2 49 49 A A S S+ 0 0 80 -2,-0.4 3,-0.2 1,-0.2 -1,-0.0 -0.459 87.9 21.2 -79.1 151.4 -3.4 11.2 -8.6 50 50 A E S S+ 0 0 205 1,-0.2 2,-0.3 -2,-0.1 -1,-0.2 0.989 127.8 24.5 55.3 72.3 -5.5 13.0 -11.3 51 51 A G S S- 0 0 59 -3,-0.2 2,-0.3 0, 0.0 -1,-0.2 -0.854 100.6 -63.2 153.4-113.5 -8.8 11.3 -10.6 52 52 A Q - 0 0 159 -2,-0.3 -4,-0.7 -3,-0.2 2,-0.3 -0.896 56.5 -61.7-158.4-174.9 -10.1 9.7 -7.5 53 53 A d E +B 47 0B 26 -2,-0.3 2,-0.3 -6,-0.2 -6,-0.2 -0.659 56.6 152.5 -85.5 135.2 -9.6 6.8 -5.0 54 54 A Q E -B 46 0B 135 -8,-2.1 -8,-0.8 -2,-0.3 2,-0.2 -0.973 31.5-134.2-160.8 145.8 -9.9 3.3 -6.3 55 55 A K - 0 0 76 -2,-0.3 -10,-0.1 -10,-0.2 3,-0.0 -0.535 8.6-169.0 -99.7 168.1 -8.5 -0.2 -5.4 56 56 A L S S+ 0 0 154 -2,-0.2 2,-0.1 3,-0.0 -1,-0.1 0.518 70.2 51.8-127.9 -22.1 -7.0 -2.9 -7.6 57 57 A A S S+ 0 0 54 1,-0.1 -2,-0.1 2,-0.0 0, 0.0 -0.320 72.9 66.4-106.0-169.7 -6.9 -5.9 -5.3 58 58 A A + 0 0 67 1,-0.2 2,-0.3 -2,-0.1 3,-0.2 0.978 62.2 173.9 56.3 85.5 -9.3 -7.6 -3.0 59 59 A A + 0 0 82 1,-0.2 -1,-0.2 -3,-0.0 -3,-0.0 -0.923 55.0 12.3-124.8 149.8 -11.9 -9.2 -5.3 60 60 A L S S+ 0 0 174 -2,-0.3 -1,-0.2 1,-0.1 -2,-0.1 0.839 75.5 143.6 56.8 34.7 -14.8 -11.5 -4.7 61 61 A E S S- 0 0 147 -3,-0.2 -1,-0.1 1,-0.0 -2,-0.0 0.019 76.2 -94.1 -92.1 27.5 -14.4 -10.9 -1.0 62 62 A H - 0 0 141 1,-0.1 3,-0.4 2,-0.1 -1,-0.0 0.975 43.0-169.5 58.1 87.8 -18.2 -11.0 -0.5 63 63 A H S S+ 0 0 192 1,-0.2 -1,-0.1 2,-0.1 -2,-0.0 0.320 72.6 85.5 -87.5 7.9 -19.4 -7.4 -0.8 64 64 A H S S+ 0 0 186 0, 0.0 -1,-0.2 0, 0.0 2,-0.1 -0.108 78.5 79.1 -99.2 34.4 -22.8 -8.5 0.4 65 65 A H + 0 0 136 -3,-0.4 -2,-0.1 2,-0.0 -3,-0.0 -0.026 45.9 92.3-113.7-143.0 -21.8 -8.2 4.1 66 66 A H 0 0 184 1,-0.1 -3,-0.0 -2,-0.1 0, 0.0 0.306 360.0 360.0 65.5 158.8 -21.5 -5.4 6.6 67 67 A H 0 0 255 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.775 360.0 360.0-156.7 360.0 -24.2 -4.2 8.9