==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=10-MAR-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-DEC-07 2JZ5 . COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN VPA0419; . SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS RIMD 2210633; . AUTHOR K.K.SINGARAPU,D.K.SUKUMARAN,A.ELETSKI,D.PARISH,L.ZHAO, . 91 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6419.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 56 61.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 12 13.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 10 11.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 30.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 160 0, 0.0 2,-0.1 0, 0.0 3,-0.0 0.000 360.0 360.0 360.0 144.2 9.6 -5.4 -18.0 2 2 A G - 0 0 54 1,-0.1 2,-0.5 0, 0.0 0, 0.0 -0.176 360.0 -63.0-103.7-159.3 13.3 -4.6 -17.8 3 3 A E - 0 0 132 -2,-0.1 2,-0.3 6,-0.0 -1,-0.1 -0.813 56.2-167.5 -93.0 129.7 15.7 -4.3 -14.9 4 4 A I - 0 0 96 -2,-0.5 2,-2.0 2,-0.1 0, 0.0 -0.750 33.4-101.5-118.6 162.1 14.8 -1.5 -12.5 5 5 A G S S+ 0 0 82 -2,-0.3 2,-0.3 4,-0.0 -2,-0.0 -0.397 80.0 111.9 -85.2 62.0 16.6 0.3 -9.7 6 6 A F - 0 0 64 -2,-2.0 3,-0.1 1,-0.2 -2,-0.1 -0.876 64.3-137.5-124.2 161.7 14.9 -1.6 -6.8 7 7 A I S S+ 0 0 145 -2,-0.3 2,-0.4 1,-0.3 -1,-0.2 0.958 96.7 32.1 -78.1 -66.7 16.1 -4.1 -4.2 8 8 A I S S- 0 0 34 54,-0.1 -1,-0.3 1,-0.1 54,-0.1 -0.780 80.0-168.6 -91.5 134.4 13.1 -6.4 -4.4 9 9 A K - 0 0 92 -2,-0.4 -1,-0.1 1,-0.3 -2,-0.0 -0.167 40.1 -47.0-102.6-163.8 11.4 -6.7 -7.7 10 10 A E + 0 0 133 -2,-0.1 -1,-0.3 1,-0.0 2,-0.3 -0.221 68.2 155.2 -61.5 163.9 8.1 -8.3 -8.8 11 11 A G - 0 0 30 3,-0.5 -1,-0.0 -3,-0.1 -3,-0.0 -0.913 55.5 -87.3-170.5-168.9 7.4 -11.8 -7.5 12 12 A D S S+ 0 0 125 -2,-0.3 59,-0.1 1,-0.1 -1,-0.1 0.720 127.3 25.2 -93.5 -27.2 4.8 -14.4 -6.7 13 13 A E S S+ 0 0 34 52,-0.1 52,-2.3 58,-0.1 2,-0.5 0.104 102.0 105.5-121.0 17.4 4.3 -13.2 -3.1 14 14 A V E +A 64 0A 7 50,-0.3 -3,-0.5 48,-0.0 2,-0.4 -0.885 40.6 172.7-105.5 125.4 5.4 -9.6 -3.7 15 15 A A E -A 63 0A 11 48,-2.2 48,-3.0 -2,-0.5 2,-0.4 -0.988 11.1-162.4-134.3 125.6 2.8 -6.8 -3.9 16 16 A D E -A 62 0A 46 -2,-0.4 2,-0.4 46,-0.3 46,-0.3 -0.827 6.2-150.5-108.2 146.0 3.5 -3.1 -4.1 17 17 A V E -A 61 0A 31 44,-2.6 44,-2.1 -2,-0.4 2,-0.6 -0.947 6.8-151.5-113.3 134.9 1.2 -0.2 -3.3 18 18 A T E -A 60 0A 55 -2,-0.4 2,-0.3 42,-0.2 42,-0.2 -0.918 17.0-170.5-110.8 110.6 1.7 3.1 -5.1 19 19 A I E -A 59 0A 9 40,-1.8 40,-1.5 -2,-0.6 2,-0.4 -0.784 6.6-159.9-106.7 144.9 0.5 6.1 -3.0 20 20 A F E +A 58 0A 130 -2,-0.3 2,-0.3 38,-0.2 38,-0.2 -0.980 26.7 132.3-125.1 137.0 0.1 9.7 -4.2 21 21 A A - 0 0 9 36,-2.2 66,-0.0 -2,-0.4 6,-0.0 -0.972 62.0 -96.9-169.6 167.8 -0.0 12.8 -2.0 22 22 A E S S+ 0 0 103 69,-0.3 2,-0.3 -2,-0.3 -1,-0.1 0.897 103.6 28.3 -59.7 -45.1 1.3 16.4 -1.5 23 23 A T > - 0 0 73 1,-0.1 4,-1.8 34,-0.1 5,-0.1 -0.843 69.5-128.5-124.3 156.7 4.0 15.4 1.0 24 24 A K H > S+ 0 0 45 -2,-0.3 4,-3.5 1,-0.2 5,-0.2 0.859 111.2 63.7 -65.2 -36.8 6.1 12.3 1.9 25 25 A D H > S+ 0 0 113 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.904 104.5 44.7 -52.7 -46.7 4.9 12.8 5.4 26 26 A A H > S+ 0 0 13 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.923 113.5 50.6 -65.4 -44.1 1.3 12.1 4.3 27 27 A L H X S+ 0 0 0 -4,-1.8 4,-3.3 1,-0.2 -2,-0.2 0.916 111.1 48.7 -57.3 -46.5 2.5 9.1 2.2 28 28 A E H X S+ 0 0 73 -4,-3.5 4,-2.8 2,-0.2 -1,-0.2 0.860 107.1 55.9 -63.4 -37.7 4.4 7.8 5.2 29 29 A S H X S+ 0 0 62 -4,-2.0 4,-0.7 -5,-0.2 -1,-0.2 0.910 115.7 37.0 -62.2 -43.8 1.4 8.2 7.4 30 30 A E H >X S+ 0 0 21 -4,-2.0 4,-1.3 2,-0.2 3,-0.8 0.906 115.2 54.6 -72.8 -43.8 -0.7 6.0 5.0 31 31 A L H 3X S+ 0 0 9 -4,-3.3 4,-2.9 1,-0.3 3,-0.4 0.888 101.7 58.9 -57.5 -42.1 2.2 3.7 4.2 32 32 A A H 3X S+ 0 0 54 -4,-2.8 4,-1.8 1,-0.3 -1,-0.3 0.823 104.4 51.5 -56.6 -33.3 2.6 3.0 8.0 33 33 A K H X S+ 0 0 0 -4,-2.5 4,-3.7 1,-0.2 3,-0.6 0.927 106.5 48.4 -65.2 -45.9 1.1 -6.2 6.5 39 39 A K H 3< S+ 0 0 116 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.749 107.0 58.9 -65.6 -24.2 2.4 -7.2 9.9 40 40 A S H 3< S+ 0 0 100 -4,-1.1 -1,-0.2 -5,-0.2 -2,-0.2 0.795 116.2 33.1 -74.2 -29.3 -1.1 -8.3 10.7 41 41 A V H << S+ 0 0 32 -4,-1.2 2,-0.3 -3,-0.6 -2,-0.2 0.869 139.2 6.6 -90.7 -45.5 -1.0 -10.7 7.8 42 42 A C >< - 0 0 9 -4,-3.7 3,-1.3 -5,-0.2 -1,-0.3 -0.900 50.5-169.7-147.1 109.2 2.6 -11.7 7.9 43 43 A A T 3 S+ 0 0 86 -2,-0.3 -1,-0.1 1,-0.3 -4,-0.1 0.812 93.7 60.0 -64.8 -28.9 5.1 -10.6 10.6 44 44 A G T 3 S+ 0 0 40 -5,-0.1 -1,-0.3 2,-0.1 2,-0.2 0.075 77.9 137.4 -89.1 24.4 7.9 -12.0 8.4 45 45 A V < - 0 0 12 -3,-1.3 2,-0.4 -7,-0.1 20,-0.2 -0.477 41.3-153.5 -70.2 138.5 7.0 -9.6 5.6 46 46 A E E +B 64 0A 110 18,-2.2 18,-3.6 -2,-0.2 2,-0.3 -0.967 19.5 177.2-114.3 133.7 9.9 -8.0 3.8 47 47 A Y E -B 63 0A 88 -2,-0.4 2,-0.3 16,-0.2 16,-0.2 -0.972 17.2-165.6-140.8 149.0 9.3 -4.6 2.1 48 48 A N E -B 62 0A 30 14,-1.4 14,-1.3 -2,-0.3 2,-0.3 -0.849 10.5-152.6-124.1 167.2 11.2 -1.9 0.2 49 49 A V - 0 0 48 -2,-0.3 12,-0.2 12,-0.2 3,-0.1 -0.954 23.5-102.5-138.4 153.1 10.2 1.6 -0.7 50 50 A S - 0 0 15 -2,-0.3 2,-0.4 1,-0.2 -1,-0.1 -0.071 65.6 -61.6 -63.0 174.8 11.1 4.1 -3.5 51 51 A E - 0 0 152 1,-0.1 2,-0.6 8,-0.0 -1,-0.2 -0.473 56.9-144.6 -67.1 118.5 13.6 6.9 -2.9 52 52 A L + 0 0 73 -2,-0.4 2,-0.2 -3,-0.1 -1,-0.1 -0.775 38.1 137.3 -93.7 118.9 12.2 9.0 -0.2 53 53 A T > - 0 0 66 -2,-0.6 3,-0.6 3,-0.0 -29,-0.2 -0.704 68.8 -88.3-139.2-170.6 12.9 12.7 -0.5 54 54 A E T 3 S+ 0 0 165 -2,-0.2 -30,-0.2 1,-0.2 -2,-0.0 0.732 126.3 51.5 -75.7 -22.2 11.2 16.1 -0.2 55 55 A E T 3 S+ 0 0 136 -32,-0.1 2,-1.1 -31,-0.0 -1,-0.2 0.242 78.5 109.3-103.2 12.6 10.1 15.8 -3.8 56 56 A S < + 0 0 10 -3,-0.6 -29,-0.2 1,-0.2 3,-0.1 -0.777 26.0 157.8 -89.6 98.2 8.6 12.3 -3.6 57 57 A K S S+ 0 0 90 -2,-1.1 -36,-2.2 1,-0.1 2,-0.3 0.318 72.4 46.8 -94.5 3.5 4.9 12.9 -4.0 58 58 A E E +A 20 0A 105 -38,-0.2 2,-0.3 -3,-0.1 -38,-0.2 -0.996 66.1 177.0-145.3 139.6 4.7 9.3 -5.0 59 59 A L E -A 19 0A 0 -40,-1.5 -40,-1.8 -2,-0.3 2,-0.5 -0.997 18.8-150.2-145.4 148.6 6.2 6.1 -3.6 60 60 A T E +A 18 0A 18 -2,-0.3 2,-0.5 -42,-0.2 -42,-0.2 -0.932 18.4 179.9-121.8 106.0 6.0 2.5 -4.4 61 61 A A E -A 17 0A 0 -44,-2.1 -44,-2.6 -2,-0.5 2,-0.5 -0.929 9.2-160.7-110.6 123.4 6.4 0.1 -1.5 62 62 A R E -AB 16 48A 24 -14,-1.3 -14,-1.4 -2,-0.5 2,-0.6 -0.903 3.3-159.3-110.8 127.9 6.3 -3.6 -2.1 63 63 A F E -AB 15 47A 0 -48,-3.0 -48,-2.2 -2,-0.5 2,-0.4 -0.906 7.0-160.3-103.0 119.5 5.6 -6.1 0.6 64 64 A K E -AB 14 46A 33 -18,-3.6 -18,-2.2 -2,-0.6 -50,-0.3 -0.871 12.2-164.3-100.4 137.9 6.7 -9.7 -0.0 65 65 A F - 0 0 0 -52,-2.3 -52,-0.1 -2,-0.4 3,-0.1 -0.347 32.9-103.5-109.9-172.7 5.1 -12.4 2.0 66 66 A E S S+ 0 0 122 1,-0.2 2,-0.3 -2,-0.1 -1,-0.1 0.854 103.0 19.7 -84.0 -37.8 5.9 -16.0 2.8 67 67 A V S >> S- 0 0 77 -54,-0.1 4,-0.9 1,-0.1 3,-0.9 -0.929 76.5-118.4-131.4 157.6 3.3 -17.4 0.4 68 68 A S H 3> S+ 0 0 51 -2,-0.3 4,-2.0 1,-0.3 5,-0.1 0.725 111.6 67.7 -66.2 -20.2 1.4 -16.0 -2.6 69 69 A A H 3> S+ 0 0 55 1,-0.2 4,-2.4 2,-0.2 -1,-0.3 0.888 95.6 53.7 -65.3 -39.2 -1.8 -16.6 -0.6 70 70 A E H <> S+ 0 0 36 -3,-0.9 4,-2.4 2,-0.2 -1,-0.2 0.840 105.7 54.6 -65.8 -33.8 -0.8 -13.8 1.9 71 71 A K H X S+ 0 0 35 -4,-0.9 4,-2.9 2,-0.2 5,-0.2 0.971 109.0 46.7 -59.2 -56.0 -0.3 -11.5 -1.1 72 72 A L H X S+ 0 0 92 -4,-2.0 4,-2.9 1,-0.2 -2,-0.2 0.889 111.5 51.8 -54.0 -45.2 -3.9 -12.1 -2.2 73 73 A I H X S+ 0 0 71 -4,-2.4 4,-2.8 2,-0.2 -1,-0.2 0.919 111.2 47.2 -59.3 -45.1 -5.2 -11.6 1.3 74 74 A F H X S+ 0 0 2 -4,-2.4 4,-2.6 2,-0.2 -2,-0.2 0.908 113.5 48.4 -63.5 -42.1 -3.4 -8.3 1.6 75 75 A E H X S+ 0 0 75 -4,-2.9 4,-1.0 2,-0.2 -2,-0.2 0.896 112.6 49.2 -64.1 -40.7 -4.7 -7.3 -1.9 76 76 A L H X S+ 0 0 119 -4,-2.9 4,-0.7 -5,-0.2 3,-0.3 0.912 113.8 44.9 -64.9 -44.5 -8.2 -8.4 -0.8 77 77 A K H >X S+ 0 0 109 -4,-2.8 4,-0.9 1,-0.2 3,-0.8 0.898 108.0 56.9 -68.4 -40.0 -8.0 -6.4 2.5 78 78 A T H 3X S+ 0 0 21 -4,-2.6 4,-3.6 1,-0.2 -1,-0.2 0.752 95.3 68.8 -65.5 -21.8 -6.6 -3.3 0.9 79 79 A R H 3< S+ 0 0 190 -4,-1.0 -1,-0.2 -3,-0.3 -2,-0.2 0.911 105.2 39.0 -60.5 -43.9 -9.6 -3.2 -1.5 80 80 A S H << S+ 0 0 90 -3,-0.8 -1,-0.2 -4,-0.7 -2,-0.2 0.627 121.6 46.7 -80.9 -13.4 -11.9 -2.3 1.4 81 81 A L H < S+ 0 0 78 -4,-0.9 -2,-0.2 1,-0.1 -3,-0.2 0.837 107.6 51.8 -94.4 -39.4 -9.2 -0.1 2.9 82 82 A A S < S+ 0 0 52 -4,-3.6 2,-0.1 -5,-0.1 -2,-0.1 0.186 91.8 95.8 -92.1 17.5 -8.1 1.9 -0.2 83 83 A R + 0 0 161 1,-0.1 -3,-0.0 -5,-0.1 3,-0.0 -0.432 57.2 57.3 -94.8-179.8 -11.6 2.9 -1.2 84 84 A L S S- 0 0 141 -2,-0.1 -1,-0.1 1,-0.1 -4,-0.0 0.992 94.1-116.6 54.1 80.1 -13.3 6.2 -0.3 85 85 A E - 0 0 174 1,-0.1 -1,-0.1 2,-0.1 -2,-0.1 -0.187 30.3-167.5 -51.3 134.5 -10.8 8.4 -1.9 86 86 A H + 0 0 81 5,-0.1 2,-1.2 -4,-0.1 -1,-0.1 0.250 53.5 107.2-118.9 8.0 -9.2 10.5 0.8 87 87 A H + 0 0 108 4,-0.2 -2,-0.1 1,-0.2 -66,-0.0 -0.781 36.1 127.1 -86.7 95.7 -7.3 13.1 -1.2 88 88 A H S S- 0 0 148 -2,-1.2 2,-0.2 0, 0.0 -1,-0.2 0.010 86.8 -98.2-142.5 21.9 -9.6 16.0 -0.4 89 89 A H S S+ 0 0 176 1,-0.2 -2,-0.1 -3,-0.1 -3,-0.0 0.064 123.9 79.9 74.2 -25.9 -7.1 18.6 0.9 90 90 A H 0 0 180 -2,-0.2 -1,-0.2 -4,-0.0 -3,-0.1 0.679 360.0 360.0 -70.7 -20.9 -8.1 17.5 4.4 91 91 A H 0 0 72 -5,-0.1 -69,-0.3 -69,-0.0 -4,-0.2 0.177 360.0 360.0-161.7 360.0 -5.7 14.9 3.3