==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 28-DEC-07 2JZ6 . COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L28; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; . AUTHOR Y.WU,K.K.SINGARAPU,V.GUIDO,A.YEE,D.SUKUMARAN,C.H.ARROWSMITH, . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6967.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 35 45.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 14.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 16 20.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A Q 0 0 233 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-171.9 -25.0 -3.4 -17.0 2 2 A G + 0 0 64 2,-0.2 0, 0.0 0, 0.0 0, 0.0 0.178 360.0 77.8 118.6 -14.8 -23.6 0.0 -16.2 3 3 A H + 0 0 180 1,-0.1 2,-1.1 3,-0.0 3,-0.0 0.661 69.9 89.1 -97.2 -23.3 -26.2 1.2 -13.7 4 4 A M + 0 0 118 1,-0.2 -2,-0.2 2,-0.0 -1,-0.1 -0.679 51.2 168.2 -75.7 99.8 -24.7 -0.9 -10.9 5 5 A I + 0 0 142 -2,-1.1 2,-1.5 1,-0.1 -1,-0.2 0.278 36.0 112.4-103.4 9.6 -22.3 1.6 -9.5 6 6 A M + 0 0 153 2,-0.0 2,-0.3 -3,-0.0 -1,-0.1 -0.658 45.8 143.5 -86.1 88.5 -21.4 -0.1 -6.3 7 7 A A - 0 0 64 -2,-1.5 2,-0.6 0, 0.0 -2,-0.0 -0.887 53.9-109.6-127.1 157.7 -17.8 -1.0 -6.9 8 8 A K + 0 0 127 -2,-0.3 2,-0.2 9,-0.1 -2,-0.0 -0.779 51.1 151.1 -91.1 122.0 -14.6 -1.2 -4.9 9 9 A R - 0 0 125 -2,-0.6 2,-0.5 7,-0.2 7,-0.2 -0.691 53.2 -54.4-135.8-174.1 -12.2 1.6 -5.7 10 10 A C > - 0 0 1 5,-3.3 4,-1.8 -2,-0.2 45,-0.2 -0.586 37.3-159.2 -72.4 119.7 -9.4 3.6 -4.2 11 11 A E T 4 S+ 0 0 87 43,-2.8 -1,-0.2 -2,-0.5 44,-0.1 0.535 89.6 53.9 -76.1 -5.5 -10.8 5.3 -1.0 12 12 A V T 4 S+ 0 0 59 42,-0.5 -1,-0.2 3,-0.1 43,-0.1 0.892 128.0 7.8 -93.2 -51.2 -7.9 7.8 -1.3 13 13 A C T 4 S- 0 0 62 2,-0.2 -2,-0.2 43,-0.0 3,-0.1 0.523 92.8-121.1-114.1 -12.6 -8.2 9.2 -4.9 14 14 A G < + 0 0 41 -4,-1.8 -3,-0.1 1,-0.3 2,-0.1 0.219 68.1 129.3 93.4 -16.6 -11.5 7.7 -6.0 15 15 A K - 0 0 146 -6,-0.1 -5,-3.3 1,-0.1 -1,-0.3 -0.360 60.1-110.8 -75.0 153.6 -10.0 5.9 -9.0 16 16 A A - 0 0 61 -7,-0.2 2,-1.3 -3,-0.1 -7,-0.2 -0.460 29.0-105.6 -82.2 153.8 -10.6 2.2 -9.6 17 17 A P + 0 0 15 0, 0.0 3,-0.1 0, 0.0 -1,-0.1 -0.652 51.4 159.4 -80.1 91.3 -8.0 -0.6 -9.2 18 18 A R + 0 0 201 -2,-1.3 2,-0.3 1,-0.2 19,-0.1 0.212 58.5 56.8-101.6 13.6 -7.3 -1.3 -12.9 19 19 A S + 0 0 64 18,-0.3 38,-0.3 1,-0.1 -1,-0.2 -0.804 44.6 138.5-149.9 101.7 -3.9 -2.9 -12.4 20 20 A G + 0 0 32 -2,-0.3 2,-1.6 -3,-0.1 17,-0.2 0.036 30.9 125.7-129.4 25.6 -3.3 -5.9 -10.2 21 21 A N + 0 0 157 16,-0.1 2,-0.3 2,-0.1 -1,-0.0 -0.610 41.3 106.2 -88.3 76.4 -0.9 -7.9 -12.3 22 22 A T - 0 0 115 -2,-1.6 2,-0.6 2,-0.0 -3,-0.0 -0.817 58.3-145.8-155.3 112.5 1.9 -8.4 -9.8 23 23 A V - 0 0 124 -2,-0.3 2,-0.1 1,-0.0 -2,-0.1 -0.712 22.0-155.7 -82.2 118.7 2.8 -11.6 -8.0 24 24 A S - 0 0 66 -2,-0.6 2,-0.3 49,-0.0 -2,-0.0 -0.472 4.4-147.2 -91.9 165.1 4.1 -10.7 -4.5 25 25 A H + 0 0 130 -2,-0.1 49,-0.2 1,-0.1 -1,-0.0 -0.969 66.3 17.9-137.3 148.2 6.3 -12.9 -2.4 26 26 A S S S+ 0 0 75 -2,-0.3 -1,-0.1 47,-0.1 -2,-0.0 0.487 92.6 103.7 75.3 6.3 6.9 -13.7 1.3 27 27 A D + 0 0 30 2,-0.1 3,-0.1 1,-0.1 -2,-0.1 0.981 32.5 162.5 -78.0 -65.3 3.5 -12.3 2.3 28 28 A K + 0 0 190 1,-0.2 2,-0.1 0, 0.0 -1,-0.1 0.709 37.6 147.1 43.9 28.8 1.3 -15.4 2.9 29 29 A K - 0 0 72 2,-0.0 2,-0.3 4,-0.0 -1,-0.2 -0.437 35.1-166.2 -90.4 160.1 -0.9 -12.8 4.7 30 30 A S + 0 0 73 -2,-0.1 2,-0.7 -3,-0.1 4,-0.1 -0.759 20.9 168.8-153.0 100.3 -4.7 -12.9 4.9 31 31 A E S S- 0 0 69 2,-0.4 9,-0.1 -2,-0.3 -2,-0.0 -0.670 101.9 -44.1-101.8 71.6 -6.8 -10.0 6.1 32 32 A R S S- 0 0 185 -2,-0.7 -1,-0.1 2,-0.0 -2,-0.1 0.913 110.5 -74.5 58.5 48.7 -9.9 -11.8 4.9 33 33 A W S S- 0 0 195 2,-0.0 -2,-0.4 0, 0.0 2,-0.3 -0.022 74.9 -51.5 61.5-169.7 -7.9 -12.6 1.8 34 34 A F - 0 0 110 -4,-0.1 5,-0.1 5,-0.1 -2,-0.0 -0.708 48.4-128.1-100.8 153.6 -7.1 -10.2 -1.0 35 35 A R B > -A 38 0A 100 3,-1.3 3,-1.1 -2,-0.3 2,-0.8 -0.648 45.5 -77.7 -96.4 156.2 -9.6 -7.9 -2.9 36 36 A P T 3 S- 0 0 99 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 -0.373 108.7 -31.0 -57.1 98.3 -9.8 -7.7 -6.7 37 37 A N T 3 S+ 0 0 75 -2,-0.8 2,-0.5 1,-0.2 20,-0.5 0.542 118.8 116.7 67.6 9.0 -6.8 -5.6 -7.6 38 38 A L E < -AB 35 56A 4 -3,-1.1 -3,-1.3 18,-0.1 2,-0.6 -0.933 45.5-169.4-117.0 122.8 -7.2 -3.8 -4.2 39 39 A Q E - B 0 55A 54 16,-1.3 16,-2.0 -2,-0.5 2,-0.7 -0.937 15.8-145.4-106.5 116.9 -4.7 -3.8 -1.4 40 40 A K E - B 0 54A 82 -2,-0.6 2,-0.4 14,-0.2 14,-0.2 -0.750 22.6-165.3 -74.5 116.2 -5.9 -2.5 1.9 41 41 A V E - B 0 53A 19 12,-2.0 12,-1.7 -2,-0.7 2,-0.9 -0.892 22.4-120.5-109.5 136.8 -2.8 -0.9 3.4 42 42 A R E + B 0 52A 117 -2,-0.4 26,-0.4 10,-0.2 10,-0.3 -0.656 44.2 174.4 -80.7 106.5 -2.6 0.1 7.0 43 43 A V E - B 0 51A 4 8,-2.9 8,-2.5 -2,-0.9 2,-0.5 -0.606 30.6-111.0-111.0 170.0 -2.0 3.8 7.1 44 44 A V E - B 0 50A 47 6,-0.2 6,-0.2 -2,-0.2 25,-0.1 -0.875 23.8-142.4-105.9 131.3 -1.8 6.5 9.8 45 45 A L E >> - B 0 49A 49 4,-3.7 3,-2.2 -2,-0.5 4,-1.1 -0.715 18.1-127.1 -90.5 144.2 -4.4 9.1 10.1 46 46 A P T 34 S+ 0 0 101 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.649 108.1 67.8 -64.1 -14.6 -3.4 12.7 11.1 47 47 A D T 34 S- 0 0 138 2,-0.1 -3,-0.0 1,-0.0 -2,-0.0 0.491 127.2 -94.9 -82.8 -4.0 -6.0 12.5 13.9 48 48 A G T <4 S+ 0 0 64 -3,-2.2 2,-0.3 1,-0.3 -4,-0.0 0.920 85.5 115.5 88.8 55.1 -3.8 9.9 15.6 49 49 A T E < -B 45 0A 76 -4,-1.1 -4,-3.7 2,-0.0 2,-0.5 -0.978 58.0-128.1-149.1 159.0 -5.3 6.7 14.4 50 50 A I E +B 44 0A 79 -2,-0.3 2,-0.4 -6,-0.2 -6,-0.2 -0.955 32.5 176.2-114.9 127.1 -4.4 3.6 12.3 51 51 A K E -B 43 0A 98 -8,-2.5 -8,-2.9 -2,-0.5 2,-0.6 -0.977 30.0-134.2-135.9 141.8 -6.7 2.6 9.5 52 52 A R E +B 42 0A 129 -2,-0.4 2,-0.3 -10,-0.3 -10,-0.2 -0.863 34.7 178.9 -91.3 120.4 -6.9 -0.0 6.7 53 53 A M E -B 41 0A 36 -12,-1.7 -12,-2.0 -2,-0.6 2,-0.8 -0.930 34.8-112.0-125.3 149.4 -8.0 1.6 3.5 54 54 A R E -B 40 0A 72 -2,-0.3 -43,-2.8 -14,-0.2 -42,-0.5 -0.694 42.5-178.1 -80.1 107.9 -8.4 0.3 -0.0 55 55 A V E -B 39 0A 1 -16,-2.0 -16,-1.3 -2,-0.8 2,-0.1 -0.915 23.3-125.2-115.4 135.0 -5.7 1.8 -2.1 56 56 A C E > -B 38 0A 3 -2,-0.4 4,-2.5 -18,-0.1 3,-0.5 -0.446 24.4-117.0 -74.9 149.6 -5.2 1.4 -5.8 57 57 A T H > S+ 0 0 47 -20,-0.5 4,-2.8 -38,-0.3 5,-0.2 0.804 116.1 61.4 -56.0 -31.0 -1.9 0.2 -7.1 58 58 A S H > S+ 0 0 73 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.951 109.4 39.6 -59.1 -49.2 -1.6 3.5 -9.0 59 59 A C H > S+ 0 0 5 -3,-0.5 4,-2.2 1,-0.2 5,-0.5 0.865 115.2 53.9 -69.1 -37.0 -1.7 5.4 -5.7 60 60 A L H < S+ 0 0 38 -4,-2.5 -2,-0.2 2,-0.2 -1,-0.2 0.884 112.1 43.8 -63.3 -41.3 0.5 2.7 -4.0 61 61 A K H < S+ 0 0 156 -4,-2.8 -2,-0.2 -5,-0.2 -1,-0.2 0.882 113.7 49.3 -73.6 -39.7 3.1 3.1 -6.7 62 62 A S H < S- 0 0 77 -4,-2.3 -2,-0.2 -5,-0.2 -1,-0.2 0.851 88.3-161.5 -68.9 -32.9 3.0 6.9 -6.7 63 63 A G < + 0 0 18 -4,-2.2 4,-0.1 -5,-0.2 -3,-0.1 0.698 46.8 130.2 62.2 21.7 3.3 6.8 -2.9 64 64 A K + 0 0 142 -5,-0.5 2,-0.2 2,-0.1 -1,-0.1 0.175 46.0 99.6 -92.3 19.1 1.9 10.4 -2.6 65 65 A V S S- 0 0 22 -6,-0.3 2,-0.9 -5,-0.1 -53,-0.0 -0.594 91.8 -89.2-102.7 162.7 -0.6 9.3 0.0 66 66 A K + 0 0 154 -2,-0.2 2,-0.3 2,-0.1 -22,-0.1 -0.631 64.3 179.0 -70.9 106.7 -0.5 9.6 3.8 67 67 A K - 0 0 125 -2,-0.9 -24,-0.1 -24,-0.2 -25,-0.0 -0.801 44.3-165.4-121.5 152.0 1.2 6.3 4.5 68 68 A Y - 0 0 145 -26,-0.4 -25,-0.1 -2,-0.3 -1,-0.1 0.143 67.6 -93.8-114.3 15.5 2.4 4.4 7.6 69 69 A V + 0 0 114 1,-0.1 -27,-0.1 -25,-0.1 -26,-0.0 0.946 58.0 167.4 67.1 91.8 4.5 2.1 5.3 70 70 A G + 0 0 38 -29,-0.0 2,-0.5 1,-0.0 -28,-0.1 0.026 49.0 91.4-120.3 25.1 2.5 -1.0 4.5 71 71 A Q + 0 0 137 1,-0.1 -30,-0.0 -30,-0.1 -1,-0.0 -0.980 35.8 164.8-127.0 119.5 4.7 -2.4 1.8 72 72 A V + 0 0 118 -2,-0.5 -1,-0.1 -3,-0.0 -3,-0.0 0.056 22.2 152.8-122.0 22.5 7.4 -4.8 2.6 73 73 A S - 0 0 57 1,-0.1 -47,-0.1 2,-0.1 -2,-0.1 -0.214 41.3-144.6 -57.4 142.4 8.2 -6.1 -0.9 74 74 A E S S+ 0 0 146 -49,-0.2 2,-0.4 2,-0.0 -1,-0.1 0.608 77.7 80.9 -87.2 -12.7 11.7 -7.4 -1.4 75 75 A V - 0 0 100 1,-0.2 -2,-0.1 0, 0.0 0, 0.0 -0.797 62.7-158.1 -98.7 134.6 11.9 -6.1 -5.0 76 76 A G 0 0 76 -2,-0.4 -1,-0.2 1,-0.2 -3,-0.1 0.987 360.0 360.0 -70.4 -63.2 12.7 -2.5 -5.7 77 77 A S 0 0 166 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 -0.555 360.0 360.0-156.8 360.0 11.3 -2.3 -9.2