==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 22-JAN-08 2JZZ . COMPND 2 MOLECULE: UBIQUITIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR T.MANOLIKAS,T.HERRMANN,B.H.MEIER . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5152.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 60.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 14.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 15.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 71 0, 0.0 2,-0.3 0, 0.0 61,-0.0 0.000 360.0 360.0 360.0 159.8 -10.6 -7.5 3.8 2 2 A Q - 0 0 117 14,-0.3 61,-0.6 12,-0.0 2,-0.3 -0.965 360.0-169.7-131.9 161.3 -7.0 -8.2 2.7 3 3 A I E -Ab 15 63A 4 12,-2.3 12,-2.7 -2,-0.3 2,-0.2 -0.892 24.2-108.1-136.4 163.1 -5.1 -7.3 -0.4 4 4 A F E -A 14 0A 92 59,-0.6 63,-0.9 -2,-0.3 2,-0.3 -0.570 23.1-165.4 -81.1 162.8 -1.7 -8.3 -1.9 5 5 A V E -A 13 0A 0 8,-1.9 8,-2.0 61,-0.2 2,-0.5 -0.921 14.0-143.3-144.3 122.8 1.4 -6.1 -2.0 6 6 A K + 0 0 129 -2,-0.3 63,-2.4 6,-0.2 2,-0.3 -0.776 52.5 111.8 -79.5 124.8 4.4 -6.9 -4.3 7 7 A T - 0 0 37 -2,-0.5 5,-0.4 61,-0.2 6,-0.1 -0.934 61.5 -0.8-170.0 178.6 7.6 -6.0 -2.4 8 8 A L S S- 0 0 131 -2,-0.3 2,-0.3 1,-0.1 3,-0.1 0.139 98.8 -62.7 34.2-119.2 10.7 -7.3 -0.7 9 9 A T S S+ 0 0 131 1,-0.1 -1,-0.1 2,-0.0 -3,-0.0 -0.948 88.9 94.8-157.8 153.8 10.7 -11.2 -0.9 10 10 A G S S- 0 0 58 -2,-0.3 -1,-0.1 3,-0.0 -2,-0.0 0.582 103.8 -71.0 122.1 47.9 8.4 -13.9 0.5 11 11 A K S S- 0 0 207 -3,-0.1 -3,-0.1 2,-0.1 -5,-0.0 0.726 101.4 -43.9 43.4 49.5 5.9 -14.7 -2.3 12 12 A T S S- 0 0 52 -5,-0.4 2,-0.2 -8,-0.1 -6,-0.2 0.666 70.1-107.8 68.3 130.3 4.0 -11.3 -2.1 13 13 A I E -A 5 0A 41 -8,-2.0 -8,-1.9 -6,-0.1 2,-0.3 -0.601 27.0-135.8 -89.2 142.7 3.0 -9.9 1.3 14 14 A T E -A 4 0A 52 -2,-0.2 2,-0.5 -10,-0.2 -10,-0.2 -0.825 17.4-159.4-108.0 142.4 -0.7 -10.0 2.3 15 15 A L E -A 3 0A 0 -12,-2.7 -12,-2.3 -2,-0.3 2,-1.4 -0.971 13.3-141.3-142.7 107.5 -2.2 -6.9 3.9 16 16 A E + 0 0 129 -2,-0.5 2,-0.4 -14,-0.3 -14,-0.3 -0.595 44.6 142.7 -83.4 86.6 -5.3 -6.8 6.0 17 17 A V - 0 0 0 -2,-1.4 -2,-0.1 4,-0.0 9,-0.0 -0.975 38.0-139.6-128.8 145.0 -7.1 -3.5 5.0 18 18 A E > - 0 0 74 -2,-0.4 3,-1.6 44,-0.0 2,-1.5 -0.569 32.8-102.2 -98.2 156.0 -10.9 -2.8 4.6 19 19 A P T 3 S+ 0 0 47 0, 0.0 41,-0.1 0, 0.0 36,-0.0 -0.125 116.7 56.1 -78.7 44.3 -12.6 -0.7 1.9 20 20 A S T 3 S+ 0 0 73 -2,-1.5 37,-0.1 36,-0.2 -3,-0.0 0.353 77.6 115.8-148.7 -5.1 -13.0 2.2 4.3 21 21 A D < - 0 0 22 -3,-1.6 35,-3.0 34,-0.1 2,-0.4 -0.073 63.1-118.3 -64.3 168.5 -9.3 2.9 5.5 22 22 A T B >> -C 55 0B 49 33,-0.2 4,-1.8 34,-0.1 3,-1.0 -0.902 19.3-123.8-111.2 142.0 -7.4 6.2 4.8 23 23 A I H 3> S+ 0 0 0 31,-1.7 4,-3.1 29,-0.5 5,-0.2 0.777 111.9 62.6 -64.6 -24.1 -4.1 6.0 2.7 24 24 A E H 3> S+ 0 0 121 28,-1.8 4,-1.8 1,-0.2 -1,-0.3 0.939 112.0 36.6 -54.9 -50.6 -2.3 7.6 5.6 25 25 A N H <> S+ 0 0 44 -3,-1.0 4,-2.8 27,-0.3 -2,-0.2 0.686 116.3 53.4 -78.9 -23.5 -3.2 4.6 7.8 26 26 A V H X S+ 0 0 0 -4,-1.8 4,-2.4 2,-0.2 5,-0.3 0.940 106.6 50.6 -76.3 -46.4 -2.8 2.1 5.0 27 27 A K H X S+ 0 0 46 -4,-3.1 4,-2.8 1,-0.2 5,-0.2 0.944 115.5 46.8 -52.9 -44.5 0.7 3.4 4.2 28 28 A A H X S+ 0 0 22 -4,-1.8 4,-3.2 -5,-0.2 5,-0.3 0.944 107.9 53.9 -51.1 -62.0 1.2 2.9 7.9 29 29 A K H X S+ 0 0 54 -4,-2.8 4,-1.7 1,-0.2 -1,-0.2 0.826 116.4 38.8 -46.1 -46.5 -0.3 -0.6 8.0 30 30 A I H X S+ 0 0 0 -4,-2.4 4,-2.1 2,-0.2 -1,-0.2 0.970 115.8 49.0 -72.4 -55.2 2.0 -1.8 5.3 31 31 A Q H <>S+ 0 0 21 -4,-2.8 5,-2.9 -5,-0.3 -2,-0.2 0.847 112.4 51.9 -58.8 -32.7 5.2 -0.0 6.4 32 32 A D H ><5S+ 0 0 115 -4,-3.2 3,-1.1 -5,-0.2 -1,-0.2 0.938 113.4 40.4 -71.1 -47.6 4.6 -1.3 9.9 33 33 A K H 3<5S+ 0 0 97 -4,-1.7 -2,-0.2 -5,-0.3 -1,-0.2 0.685 114.8 54.6 -75.8 -16.9 4.2 -5.0 8.9 34 34 A E T 3<5S- 0 0 35 -4,-2.1 -1,-0.2 2,-0.2 -2,-0.2 0.338 109.9-125.8 -90.9 2.8 7.0 -4.6 6.4 35 35 A G T < 5S+ 0 0 74 -3,-1.1 -3,-0.2 1,-0.2 -4,-0.1 0.856 72.5 116.6 59.1 35.6 9.3 -3.3 9.3 36 36 A I < - 0 0 34 -5,-2.9 -1,-0.2 -6,-0.1 -2,-0.2 -0.928 63.5-114.8-136.2 151.2 10.0 -0.2 7.1 37 37 A P >> - 0 0 47 0, 0.0 4,-2.6 0, 0.0 3,-1.6 -0.465 29.9-110.2 -82.7 167.8 9.3 3.6 7.4 38 38 A P T 34 S+ 0 0 68 0, 0.0 5,-0.1 0, 0.0 -10,-0.0 0.759 111.9 76.7 -64.3 -24.7 7.1 5.8 5.2 39 39 A D T 34 S+ 0 0 98 1,-0.2 3,-0.1 3,-0.1 35,-0.0 0.628 115.3 18.1 -66.0 -9.3 10.3 7.4 3.9 40 40 A Q T <4 S+ 0 0 58 -3,-1.6 2,-0.5 31,-0.1 -1,-0.2 0.594 103.8 92.9-125.6 -31.0 10.7 4.2 1.8 41 41 A Q < - 0 0 3 -4,-2.6 2,-0.6 28,-0.1 30,-0.1 -0.543 60.0-168.8 -68.7 115.8 7.2 2.7 1.8 42 42 A R - 0 0 110 -2,-0.5 28,-0.6 28,-0.1 2,-0.3 -0.899 7.6-153.2-121.3 100.5 5.7 4.1 -1.4 43 43 A L B +D 69 0C 11 -2,-0.6 7,-0.6 26,-0.1 2,-0.3 -0.590 23.8 161.3 -79.4 128.3 1.9 3.6 -1.8 44 44 A I E -E 49 0D 35 24,-0.5 2,-0.4 23,-0.5 5,-0.2 -0.876 22.4-156.0-124.4 159.6 0.6 3.5 -5.4 45 45 A F E > S-E 48 0D 6 3,-1.9 3,-1.6 -2,-0.3 21,-0.1 -0.942 72.6 -30.8-130.8 129.4 -2.8 2.0 -6.5 46 46 A A T 3 S- 0 0 96 19,-0.6 3,-0.1 -2,-0.4 21,-0.1 0.688 125.8 -43.3 46.7 35.7 -3.1 0.9 -10.1 47 47 A G T 3 S+ 0 0 74 1,-0.3 2,-0.4 20,-0.2 -1,-0.3 0.831 114.7 116.1 77.0 33.5 -0.6 3.4 -11.6 48 48 A K E < -E 45 0D 97 -3,-1.6 -3,-1.9 0, 0.0 -1,-0.3 -0.997 63.5-130.0-131.0 132.6 -2.0 6.4 -9.5 49 49 A Q E -E 44 0D 163 -2,-0.4 2,-0.2 -5,-0.2 -5,-0.2 -0.611 34.4-126.4 -75.6 144.5 -0.1 8.4 -6.7 50 50 A L - 0 0 17 -7,-0.6 3,-0.1 -2,-0.2 -1,-0.1 -0.537 7.1-141.5-104.5 163.3 -2.3 8.6 -3.6 51 51 A E - 0 0 128 -2,-0.2 2,-2.3 1,-0.1 -1,-0.1 0.382 23.7-141.1-108.9 3.2 -3.4 11.6 -1.5 52 52 A D S S+ 0 0 56 1,-0.1 2,-1.9 2,-0.1 -28,-1.8 -0.455 96.0 66.4 68.7 -64.7 -3.0 10.2 2.1 53 53 A G S S+ 0 0 63 -2,-2.3 2,-0.3 -30,-0.2 -1,-0.1 -0.580 83.5 108.2 -77.9 70.7 -6.2 12.0 3.2 54 54 A R - 0 0 91 -2,-1.9 -31,-1.7 -4,-0.0 2,-0.3 -0.963 67.3-121.4-150.1 141.1 -8.4 9.8 0.9 55 55 A T B >> -C 22 0B 67 -2,-0.3 3,-1.9 -33,-0.2 4,-1.3 -0.626 14.7-129.2 -90.3 144.5 -10.8 7.0 1.7 56 56 A L H 3> S+ 0 0 0 -35,-3.0 4,-2.0 -2,-0.3 5,-0.3 0.699 105.7 68.4 -58.6 -27.0 -10.5 3.4 0.5 57 57 A S H 34 S+ 0 0 61 -36,-0.2 -1,-0.3 1,-0.2 -37,-0.1 0.671 105.2 42.8 -70.8 -18.1 -14.1 3.5 -0.7 58 58 A D H <4 S+ 0 0 92 -3,-1.9 -2,-0.2 1,-0.1 -1,-0.2 0.791 115.0 47.3 -88.6 -37.2 -13.0 6.0 -3.4 59 59 A Y H < S- 0 0 24 -4,-1.3 -2,-0.2 2,-0.1 -3,-0.2 0.724 98.1-167.3 -80.1 -23.3 -9.8 4.2 -4.3 60 60 A N < + 0 0 116 -4,-2.0 2,-0.3 -5,-0.2 -3,-0.1 0.858 18.3 149.6 46.0 95.5 -11.9 1.1 -4.5 61 61 A I + 0 0 21 -5,-0.3 2,-0.3 2,-0.0 -1,-0.1 -0.992 26.4 180.0-151.9 151.0 -10.2 -2.3 -4.6 62 62 A Q S S- 0 0 113 -2,-0.3 2,-2.1 -61,-0.0 -59,-0.1 -0.893 82.8 -35.0-150.4 123.9 -10.5 -6.0 -3.7 63 63 A K B > S+b 3 0A 139 -61,-0.6 3,-1.4 -2,-0.3 -59,-0.6 -0.396 134.8 69.0 64.2 -71.6 -7.6 -8.4 -4.6 64 64 A E T 3 S+ 0 0 156 -2,-2.1 -1,-0.3 1,-0.3 -18,-0.2 0.533 79.9 88.1 -41.2 -19.7 -7.0 -6.5 -7.9 65 65 A S T 3 + 0 0 3 -20,-0.1 -19,-0.6 1,-0.0 -1,-0.3 0.968 46.9 149.4 -38.2 -73.1 -5.8 -3.9 -5.3 66 66 A T < - 0 0 39 -3,-1.4 -61,-0.2 1,-0.1 -20,-0.1 0.797 26.3-174.4 24.3 62.6 -2.2 -5.3 -5.3 67 67 A L - 0 0 0 -63,-0.9 -23,-0.5 -22,-0.1 -20,-0.2 0.624 17.2-158.2 -64.2 -19.4 -1.1 -1.8 -4.6 68 68 A H - 0 0 54 -64,-0.2 -24,-0.5 1,-0.1 2,-0.4 0.662 8.5-116.6 50.5 156.7 2.6 -2.8 -4.9 69 69 A L B -D 43 0C 21 -63,-2.4 2,-0.4 -26,-0.1 -26,-0.1 -0.976 24.6-173.1-130.2 130.6 5.7 -1.0 -3.4 70 70 A V + 0 0 70 -28,-0.6 2,-0.3 -2,-0.4 -28,-0.1 -0.975 7.7 168.6-125.9 135.2 8.6 0.6 -5.3 71 71 A L + 0 0 94 -2,-0.4 2,-0.2 -30,-0.1 4,-0.1 -0.847 13.7 132.2-136.5 172.3 11.9 2.1 -4.0 72 72 A R + 0 0 194 2,-0.6 2,-2.7 -2,-0.3 -2,-0.0 -0.524 68.6 20.9 146.5 149.8 15.1 3.3 -5.7 73 73 A L S S+ 0 0 174 -2,-0.2 2,-0.3 2,-0.1 -2,-0.0 -0.248 109.3 76.6 61.2 -49.5 17.3 6.4 -5.5 74 74 A R S S+ 0 0 132 -2,-2.7 -2,-0.6 2,-0.1 0, 0.0 -0.715 76.0 55.5 -82.0 145.5 15.9 7.3 -2.0 75 75 A G 0 0 55 -2,-0.3 -2,-0.1 1,-0.1 -1,-0.1 0.830 360.0 360.0 93.5 86.8 17.2 5.3 1.0 76 76 A G 0 0 127 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.664 360.0 360.0 96.1 360.0 21.0 5.5 1.2