==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 04-FEB-08 2K0N . COMPND 2 MOLECULE: MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR H.ARTHANARI,D.P.FRUEH,G.K.WAGNER,A.M.NAAR . 85 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5891.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 67 78.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 62 72.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 6 A V 0 0 91 0, 0.0 56,-0.1 0, 0.0 55,-0.1 0.000 360.0 360.0 360.0 -64.9 2.1 -0.0 -1.2 2 7 A Q + 0 0 144 0, 0.0 55,-0.1 0, 0.0 0, 0.0 0.426 360.0 12.1-146.8 -44.1 -0.2 1.9 -3.6 3 8 A D S S+ 0 0 60 53,-0.1 54,-0.1 2,-0.1 53,-0.0 0.655 127.6 51.8-113.4 -30.1 -3.8 0.9 -2.9 4 9 A K S S+ 0 0 35 1,-0.2 3,-0.5 2,-0.2 53,-0.1 0.775 112.2 47.3 -78.8 -27.8 -3.5 -1.0 0.4 5 10 A D S S+ 0 0 120 1,-0.2 -1,-0.2 0, 0.0 -2,-0.1 0.719 109.9 53.0 -84.2 -23.5 -1.6 1.8 2.0 6 11 A T S S+ 0 0 100 2,-0.0 -1,-0.2 0, 0.0 -2,-0.2 0.255 83.5 132.7 -94.3 11.3 -4.1 4.4 0.8 7 12 A L - 0 0 23 -3,-0.5 2,-0.1 1,-0.1 -3,-0.1 -0.190 49.5-132.1 -61.0 155.1 -7.0 2.4 2.3 8 13 A S > - 0 0 76 1,-0.0 4,-0.5 0, 0.0 3,-0.1 -0.326 26.8 -97.6-100.1-175.5 -9.5 4.3 4.4 9 14 A N H > S+ 0 0 124 1,-0.2 4,-2.2 2,-0.2 3,-0.3 0.723 113.3 74.1 -75.7 -22.2 -11.1 3.5 7.8 10 15 A A H > S+ 0 0 68 1,-0.2 4,-2.8 2,-0.2 5,-0.3 0.949 92.7 50.9 -55.1 -54.1 -14.1 2.0 6.1 11 16 A E H > S+ 0 0 61 1,-0.2 4,-2.8 2,-0.2 -1,-0.2 0.803 109.5 54.7 -54.8 -29.8 -12.2 -1.2 5.2 12 17 A R H X S+ 0 0 88 -4,-0.5 4,-2.2 -3,-0.3 5,-0.3 0.950 110.7 41.3 -69.9 -51.0 -11.1 -1.4 8.8 13 18 A A H X S+ 0 0 70 -4,-2.2 4,-1.8 1,-0.2 -2,-0.2 0.844 121.0 45.0 -65.7 -34.3 -14.6 -1.3 10.3 14 19 A K H X S+ 0 0 144 -4,-2.8 4,-3.2 -5,-0.2 5,-0.3 0.926 111.0 51.5 -75.2 -47.4 -15.9 -3.6 7.6 15 20 A N H X S+ 0 0 1 -4,-2.8 4,-2.6 -5,-0.3 5,-0.2 0.940 116.9 39.7 -54.7 -51.8 -12.9 -6.1 7.8 16 21 A V H X S+ 0 0 28 -4,-2.2 4,-3.2 2,-0.2 5,-0.2 0.928 114.9 52.8 -64.7 -46.8 -13.3 -6.4 11.5 17 22 A N H X S+ 0 0 100 -4,-1.8 4,-2.1 -5,-0.3 -2,-0.2 0.921 114.6 42.1 -55.4 -47.4 -17.1 -6.4 11.4 18 23 A G H X S+ 0 0 28 -4,-3.2 4,-2.0 2,-0.2 -1,-0.2 0.920 115.6 48.3 -67.2 -45.0 -17.1 -9.2 8.8 19 24 A L H X S+ 0 0 0 -4,-2.6 4,-3.5 -5,-0.3 5,-0.3 0.893 111.7 50.9 -62.6 -40.9 -14.4 -11.2 10.5 20 25 A L H X S+ 0 0 64 -4,-3.2 4,-3.1 2,-0.2 5,-0.3 0.942 108.5 50.5 -62.3 -49.4 -16.1 -10.9 13.9 21 26 A Q H X S+ 0 0 99 -4,-2.1 4,-0.9 -5,-0.2 -1,-0.2 0.891 119.8 37.7 -56.2 -42.0 -19.5 -12.1 12.5 22 27 A V H X S+ 0 0 8 -4,-2.0 4,-2.0 2,-0.2 3,-0.5 0.976 118.4 45.8 -74.1 -59.4 -17.7 -15.1 10.9 23 28 A L H X S+ 0 0 1 -4,-3.5 4,-2.6 1,-0.3 5,-0.2 0.905 116.0 47.8 -50.2 -47.0 -15.2 -15.9 13.6 24 29 A M H X S+ 0 0 64 -4,-3.1 4,-1.9 -5,-0.3 -1,-0.3 0.810 106.0 60.8 -65.3 -30.1 -17.9 -15.6 16.3 25 30 A D H X S+ 0 0 33 -4,-0.9 4,-1.3 -3,-0.5 -2,-0.2 0.945 114.1 32.4 -62.3 -50.2 -20.2 -17.8 14.2 26 31 A I H X S+ 0 0 40 -4,-2.0 4,-1.2 2,-0.2 5,-0.2 0.837 119.2 53.7 -76.0 -34.4 -17.8 -20.8 14.3 27 32 A N H X S+ 0 0 18 -4,-2.6 6,-1.3 -5,-0.3 4,-1.2 0.775 112.3 45.4 -70.5 -26.4 -16.5 -19.9 17.8 28 33 A T H < S+ 0 0 73 -4,-1.9 -1,-0.2 -5,-0.2 -2,-0.2 0.779 102.6 64.1 -86.1 -30.2 -20.1 -19.8 19.1 29 34 A L H < S- 0 0 48 -4,-1.3 -2,-0.2 -5,-0.2 -1,-0.1 0.885 143.1 -34.7 -60.4 -39.9 -21.2 -23.0 17.3 30 35 A N H < S+ 0 0 144 -4,-1.2 -2,-0.2 3,-0.0 -3,-0.2 0.160 113.3 102.4-172.8 26.4 -18.7 -25.0 19.5 31 36 A G S < S- 0 0 25 -4,-1.2 -3,-0.2 -5,-0.2 -4,-0.1 0.395 108.0 -74.9 -99.3 1.7 -15.7 -22.7 20.1 32 37 A G - 0 0 39 -4,-0.2 2,-2.9 -5,-0.1 -4,-0.2 -0.213 46.2-154.6 136.7 -46.4 -16.7 -21.8 23.6 33 38 A S S > S+ 0 0 66 -6,-1.3 4,-0.6 1,-0.2 -5,-0.1 -0.350 92.3 52.0 74.0 -63.6 -19.6 -19.3 23.2 34 39 A S T 4 S+ 0 0 106 -2,-2.9 3,-0.4 1,-0.2 -1,-0.2 0.944 117.1 36.3 -68.1 -49.4 -18.8 -17.7 26.6 35 40 A D T >> S+ 0 0 98 1,-0.2 4,-2.6 2,-0.1 3,-0.7 0.447 94.1 97.7 -82.6 -0.5 -15.1 -17.1 25.9 36 41 A T H 3>>S+ 0 0 9 1,-0.3 4,-3.3 2,-0.2 5,-0.6 0.948 75.2 57.2 -51.4 -56.6 -16.1 -16.3 22.3 37 42 A A H 3X5S+ 0 0 75 -4,-0.6 4,-0.9 -3,-0.4 -1,-0.3 0.831 112.9 43.3 -44.4 -37.4 -16.1 -12.6 22.9 38 43 A D H <>5S+ 0 0 101 -3,-0.7 4,-2.2 -4,-0.2 5,-0.3 0.901 115.8 46.5 -77.0 -43.8 -12.5 -13.0 24.0 39 44 A K H X5S+ 0 0 70 -4,-2.6 4,-3.3 1,-0.2 5,-0.2 0.964 116.7 42.5 -62.9 -54.5 -11.5 -15.4 21.2 40 45 A I H X5S+ 0 0 4 -4,-3.3 4,-2.7 1,-0.2 5,-0.5 0.815 111.2 59.6 -62.3 -30.7 -13.0 -13.4 18.4 41 46 A R H XX S+ 0 0 53 -4,-2.3 4,-2.9 -5,-0.2 3,-0.5 0.967 108.9 46.5 -68.3 -54.8 -6.3 -11.3 11.9 48 53 A E H 3X S+ 0 0 44 -4,-3.2 4,-1.6 1,-0.3 5,-0.2 0.834 113.9 51.3 -57.1 -33.3 -7.0 -7.8 10.6 49 54 A A H 3X S+ 0 0 53 -4,-1.7 4,-2.0 -5,-0.3 -1,-0.3 0.803 112.2 46.4 -74.2 -30.2 -3.5 -6.8 11.7 50 55 A A H S- 0 0 18 -54,-0.1 4,-2.8 -53,-0.1 3,-0.5 -0.971 77.4 -77.7-177.5 170.2 -2.2 -4.6 -2.3 58 63 A K H > S+ 0 0 107 -2,-0.3 4,-1.7 1,-0.3 5,-0.2 0.822 132.0 48.6 -51.4 -33.0 -5.9 -3.8 -2.3 59 64 A K H > S+ 0 0 113 2,-0.2 4,-1.7 1,-0.2 -1,-0.3 0.832 111.1 48.7 -77.0 -34.0 -6.5 -7.1 -4.0 60 65 A E H > S+ 0 0 86 -3,-0.5 4,-1.2 2,-0.2 -2,-0.2 0.821 111.0 51.4 -74.5 -32.2 -4.3 -9.0 -1.4 61 66 A Y H X S+ 0 0 4 -4,-2.8 4,-2.2 2,-0.2 5,-0.3 0.957 113.7 41.2 -69.3 -52.6 -6.1 -7.3 1.5 62 67 A M H X S+ 0 0 108 -4,-1.7 4,-2.6 1,-0.2 5,-0.2 0.894 116.8 49.8 -62.6 -41.3 -9.7 -8.2 0.3 63 68 A D H X S+ 0 0 74 -4,-1.7 4,-1.0 2,-0.2 -1,-0.2 0.787 109.3 54.6 -68.2 -27.8 -8.6 -11.6 -0.7 64 69 A S H X S+ 0 0 31 -4,-1.2 4,-1.9 2,-0.2 -2,-0.2 0.966 116.2 33.6 -70.4 -54.8 -6.9 -12.1 2.7 65 70 A M H X S+ 0 0 35 -4,-2.2 4,-2.7 1,-0.2 5,-0.3 0.908 116.8 55.7 -68.0 -43.1 -9.9 -11.3 4.9 66 71 A N H X S+ 0 0 93 -4,-2.6 4,-1.6 -5,-0.3 -1,-0.2 0.808 110.2 47.9 -59.5 -29.9 -12.4 -12.8 2.4 67 72 A E H X S+ 0 0 93 -4,-1.0 4,-2.2 -5,-0.2 5,-0.2 0.887 111.1 48.3 -78.0 -41.9 -10.4 -16.0 2.6 68 73 A K H X S+ 0 0 78 -4,-1.9 4,-1.9 1,-0.2 -2,-0.2 0.868 117.6 42.4 -66.3 -37.3 -10.2 -16.0 6.4 69 74 A V H X S+ 0 0 23 -4,-2.7 4,-2.9 2,-0.2 5,-0.4 0.854 112.8 52.8 -77.3 -36.8 -14.0 -15.4 6.6 70 75 A A H X S+ 0 0 40 -4,-1.6 4,-1.3 -5,-0.3 -2,-0.2 0.885 115.8 40.0 -65.8 -39.8 -14.8 -17.9 3.8 71 76 A V H X S+ 0 0 76 -4,-2.2 4,-1.9 2,-0.2 -2,-0.2 0.896 120.7 43.5 -76.2 -42.5 -12.9 -20.6 5.5 72 77 A M H X S+ 0 0 46 -4,-1.9 4,-1.2 -5,-0.2 -2,-0.2 0.958 116.9 44.8 -67.6 -52.7 -14.1 -19.8 9.1 73 78 A R H X S+ 0 0 124 -4,-2.9 4,-2.0 1,-0.2 3,-0.2 0.881 112.4 54.0 -59.2 -39.7 -17.7 -19.2 8.1 74 79 A N H X S+ 0 0 104 -4,-1.3 4,-2.4 -5,-0.4 5,-0.2 0.925 106.0 51.0 -61.2 -46.4 -17.7 -22.4 6.0 75 80 A T H X S+ 0 0 48 -4,-1.9 4,-2.0 1,-0.2 -1,-0.2 0.760 108.7 54.9 -63.2 -24.5 -16.4 -24.5 8.9 76 81 A Y H X S+ 0 0 46 -4,-1.2 4,-1.7 -3,-0.2 -1,-0.2 0.921 114.9 35.4 -74.9 -46.4 -19.2 -23.0 11.0 77 82 A N H X S+ 0 0 73 -4,-2.0 4,-0.7 2,-0.2 -2,-0.2 0.729 121.4 50.1 -79.0 -23.2 -22.0 -24.0 8.6 78 83 A T H X S+ 0 0 92 -4,-2.4 4,-0.9 -5,-0.2 -2,-0.2 0.881 114.7 41.0 -81.3 -41.8 -20.2 -27.2 7.7 79 84 A R H X S+ 0 0 183 -4,-2.0 4,-0.9 -5,-0.2 3,-0.2 0.876 120.3 43.8 -73.6 -39.0 -19.6 -28.4 11.3 80 85 A K H X S+ 0 0 58 -4,-1.7 4,-2.9 -5,-0.2 5,-0.4 0.759 99.6 73.9 -76.7 -25.7 -23.0 -27.3 12.5 81 86 A N H X S+ 0 0 82 -4,-0.7 4,-2.2 1,-0.2 -1,-0.2 0.918 100.7 42.3 -53.0 -47.9 -24.7 -28.8 9.4 82 87 A A H < S+ 0 0 78 -4,-0.9 -1,-0.2 2,-0.2 -2,-0.2 0.860 112.4 55.1 -68.1 -36.5 -24.1 -32.3 10.7 83 88 A V H < S+ 0 0 118 -4,-0.9 -2,-0.2 1,-0.2 -1,-0.2 0.920 115.8 36.6 -62.9 -45.5 -25.2 -31.3 14.2 84 89 A T H < 0 0 107 -4,-2.9 -2,-0.2 1,-0.1 -1,-0.2 0.808 360.0 360.0 -77.1 -31.2 -28.5 -29.9 13.0 85 90 A A < 0 0 114 -4,-2.2 -3,-0.2 -5,-0.4 -2,-0.2 0.967 360.0 360.0 -77.8 360.0 -28.9 -32.7 10.4