==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 22-FEB-08 2K16 . COMPND 2 MOLECULE: TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR H.VAN INGEN,F.M.A.VAN SCHAIK,H.WIENK,M.TIMMERS,R.BOELENS . 75 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6140.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 27 36.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 10 13.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 12.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 6 8.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 850 A G 0 0 129 0, 0.0 2,-0.6 0, 0.0 3,-0.2 0.000 360.0 360.0 360.0 153.3 22.3 2.1 3.6 2 851 A S + 0 0 94 1,-0.2 3,-0.0 3,-0.1 0, 0.0 -0.602 360.0 169.6 -75.7 113.3 19.1 1.9 1.6 3 852 A H S S+ 0 0 181 -2,-0.6 3,-0.4 2,-0.0 -1,-0.2 0.825 70.5 47.5 -86.4 -42.0 19.9 2.1 -2.0 4 853 A M S S+ 0 0 145 1,-0.2 0, 0.0 -3,-0.2 0, 0.0 -0.420 91.4 53.4 -93.1 171.8 16.4 1.2 -3.0 5 854 A A S S+ 0 0 66 -2,-0.1 -1,-0.2 -3,-0.0 -3,-0.1 0.539 77.3 106.4 76.5 12.3 13.1 2.7 -1.6 6 855 A M S S+ 0 0 141 -3,-0.4 3,-0.2 2,-0.0 2,-0.1 0.702 78.0 51.2 -87.1 -24.0 14.5 6.2 -2.5 7 856 A A S S+ 0 0 61 1,-0.2 3,-0.1 3,-0.0 13,-0.1 -0.391 80.4 64.5-100.3-174.3 12.1 6.3 -5.3 8 857 A Y S S+ 0 0 110 1,-0.2 12,-2.4 -2,-0.1 2,-0.4 0.545 93.5 98.8 68.2 12.3 8.3 5.6 -5.3 9 858 A V E +A 19 0A 66 -3,-0.2 2,-0.3 10,-0.2 10,-0.2 -0.985 47.5 166.4-136.7 114.3 8.5 8.6 -3.1 10 859 A I E -A 18 0A 81 8,-2.2 8,-3.3 -2,-0.4 2,-0.5 -0.902 32.9-119.5-124.7 154.6 7.7 12.1 -4.4 11 860 A R E -A 17 0A 158 -2,-0.3 6,-0.2 6,-0.2 5,-0.1 -0.841 24.0-134.5 -98.8 134.7 7.1 15.2 -2.4 12 861 A D - 0 0 50 4,-2.8 3,-0.1 -2,-0.5 6,-0.1 -0.227 33.4 -96.1 -71.9 172.2 3.9 17.0 -2.7 13 862 A E S S+ 0 0 187 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.844 130.5 40.6 -63.1 -34.7 3.6 20.8 -3.1 14 863 A W S S- 0 0 232 0, 0.0 -1,-0.3 0, 0.0 -3,-0.0 0.628 128.3 -99.9 -88.7 -14.4 3.0 21.1 0.6 15 864 A G S S+ 0 0 31 1,-0.2 -2,-0.1 -3,-0.1 3,-0.0 0.529 73.7 147.4 105.3 10.5 5.7 18.5 1.3 16 865 A N - 0 0 90 1,-0.1 -4,-2.8 -5,-0.1 2,-0.7 -0.255 57.1 -94.2 -69.0 164.0 3.3 15.6 1.8 17 866 A Q E -A 11 0A 79 -6,-0.2 2,-0.8 -8,-0.1 -6,-0.2 -0.735 29.7-154.1 -88.4 121.1 4.4 12.2 0.8 18 867 A I E -A 10 0A 32 -8,-3.3 -8,-2.2 -2,-0.7 2,-0.4 -0.872 17.5-151.4 -91.5 112.5 3.3 11.1 -2.5 19 868 A W E -A 9 0A 68 -2,-0.8 2,-0.9 -10,-0.2 9,-0.5 -0.713 7.9-149.1 -88.5 130.8 3.3 7.5 -2.4 20 869 A I - 0 0 31 -12,-2.4 23,-0.1 -2,-0.4 21,-0.0 -0.926 25.0-130.5-100.5 104.1 3.8 5.5 -5.5 21 870 A C B >>> -B 26 0B 0 5,-2.0 4,-3.3 -2,-0.9 3,-1.1 -0.398 9.4-151.0 -54.7 112.4 1.8 2.4 -5.0 22 871 A P T 345S+ 0 0 36 0, 0.0 -1,-0.2 0, 0.0 21,-0.1 0.427 90.9 70.9 -71.9 3.6 4.2 -0.5 -5.7 23 872 A G T 345S+ 0 0 35 3,-0.2 20,-0.1 1,-0.0 -2,-0.0 0.840 122.3 6.4 -83.7 -36.7 1.1 -2.4 -6.8 24 873 A C T <45S- 0 0 45 -3,-1.1 19,-0.0 2,-0.2 -3,-0.0 0.651 95.5-122.0-115.0 -27.8 0.5 -0.4 -9.9 25 874 A N T <5S+ 0 0 95 -4,-3.3 -17,-0.1 1,-0.3 -5,-0.0 0.629 70.3 129.6 82.3 24.0 3.6 1.8 -10.0 26 875 A K B < -B 21 0B 103 -5,-0.7 -5,-2.0 -18,-0.0 -1,-0.3 -0.827 52.4-139.4-102.9 144.4 1.4 4.9 -10.0 27 876 A P - 0 0 45 0, 0.0 2,-1.2 0, 0.0 -7,-0.2 -0.315 53.7 -69.4 -80.4 174.1 1.7 7.9 -7.6 28 877 A D + 0 0 60 -9,-0.5 -8,-0.0 1,-0.2 5,-0.0 -0.633 59.4 168.0 -69.3 102.1 -1.5 9.5 -6.3 29 878 A D S S- 0 0 98 -2,-1.2 -1,-0.2 -3,-0.0 0, 0.0 0.358 78.1 -55.5 -95.0 5.1 -2.8 11.0 -9.4 30 879 A G S S+ 0 0 62 1,-0.2 -2,-0.1 -3,-0.1 0, 0.0 0.653 98.6 125.1 119.3 55.8 -6.1 11.6 -7.8 31 880 A S - 0 0 36 14,-0.0 2,-0.3 15,-0.0 -1,-0.2 -0.885 65.0 -93.6-134.2 163.1 -7.4 8.4 -6.4 32 881 A P - 0 0 69 0, 0.0 13,-2.1 0, 0.0 2,-0.3 -0.638 46.3-150.0 -75.3 137.7 -8.5 7.1 -3.0 33 882 A M E -C 44 0C 30 -2,-0.3 2,-0.4 11,-0.2 11,-0.3 -0.835 12.7-161.8-117.0 152.8 -5.7 5.4 -1.2 34 883 A I E -C 43 0C 18 9,-2.5 9,-3.7 -2,-0.3 2,-0.2 -0.994 11.2-144.1-134.4 134.2 -5.6 2.6 1.2 35 884 A G E -C 42 0C 20 -2,-0.4 7,-0.2 7,-0.3 25,-0.1 -0.649 20.6-111.4 -99.2 160.3 -2.7 1.7 3.6 36 885 A C - 0 0 20 5,-1.3 25,-0.2 -2,-0.2 -1,-0.1 -0.351 7.5-137.2 -85.9 166.7 -1.5 -1.7 4.7 37 886 A D S S+ 0 0 85 23,-2.0 24,-0.1 -2,-0.1 -1,-0.1 0.689 107.0 33.9 -92.9 -22.8 -1.8 -3.3 8.1 38 887 A D S S+ 0 0 100 22,-0.4 2,-0.2 24,-0.0 23,-0.1 0.808 119.0 49.1-101.5 -37.6 1.8 -4.6 7.9 39 888 A C S S- 0 0 36 2,-0.1 -3,-0.2 1,-0.1 23,-0.0 -0.570 72.0-134.9-103.2 169.6 3.5 -1.9 5.9 40 889 A D S S+ 0 0 125 -2,-0.2 -1,-0.1 -5,-0.1 2,-0.1 0.674 73.9 90.0 -94.2 -21.0 3.5 1.9 6.4 41 890 A D S S- 0 0 73 -6,-0.1 -5,-1.3 1,-0.1 2,-0.4 -0.288 71.3-118.6 -87.1 163.6 2.9 3.0 2.8 42 891 A W E -C 35 0C 108 -7,-0.2 -7,-0.3 -2,-0.1 2,-0.2 -0.812 21.7-170.2-110.2 142.6 -0.3 3.6 1.0 43 892 A Y E -C 34 0C 9 -9,-3.7 -9,-2.5 -2,-0.4 2,-0.3 -0.505 26.8-102.3-112.8-178.1 -1.7 1.9 -2.1 44 893 A H E > -C 33 0C 1 -11,-0.3 4,-0.9 -2,-0.2 -11,-0.2 -0.752 20.8-119.5-110.8 160.3 -4.6 2.8 -4.3 45 894 A W H >>>S+ 0 0 63 -13,-2.1 5,-2.3 -2,-0.3 4,-2.2 0.937 108.5 48.7 -60.2 -54.1 -8.1 1.3 -4.5 46 895 A P H 345S+ 0 0 97 0, 0.0 -1,-0.2 0, 0.0 5,-0.0 0.789 105.8 60.5 -62.2 -26.6 -8.1 0.1 -8.2 47 896 A C H 345S+ 0 0 43 1,-0.2 -2,-0.2 -3,-0.1 0, 0.0 0.851 119.3 24.3 -69.3 -36.8 -4.8 -1.6 -7.8 48 897 A V H <<5S- 0 0 42 -4,-0.9 -1,-0.2 -3,-0.7 -3,-0.1 0.581 115.6-105.8-107.1 -17.9 -6.0 -3.9 -5.1 49 898 A G T <5 + 0 0 55 -4,-2.2 2,-0.6 1,-0.2 -4,-0.1 0.903 48.4 174.9 93.3 48.9 -9.6 -3.9 -5.9 50 899 A I < + 0 0 27 -5,-2.3 -1,-0.2 1,-0.2 3,-0.1 -0.779 11.2 177.3 -88.6 125.2 -11.3 -1.8 -3.3 51 900 A M S S- 0 0 186 -2,-0.6 2,-0.3 1,-0.5 -1,-0.2 0.814 72.5 -9.1 -91.7 -37.3 -15.0 -1.4 -4.0 52 901 A A S S- 0 0 68 -7,-0.1 -1,-0.5 0, 0.0 0, 0.0 -0.951 99.1 -63.3-156.6 158.9 -15.7 0.6 -0.9 53 902 A A - 0 0 80 -2,-0.3 3,-0.1 -3,-0.1 -19,-0.0 -0.277 58.4-138.6 -55.2 113.8 -13.8 1.5 2.3 54 903 A P - 0 0 46 0, 0.0 -1,-0.1 0, 0.0 2,-0.1 -0.182 29.9 -78.6 -69.2 165.9 -13.1 -1.8 4.1 55 904 A P - 0 0 65 0, 0.0 5,-0.0 0, 0.0 0, 0.0 -0.343 23.8-141.7 -67.5 151.1 -13.4 -2.4 7.9 56 905 A E S S+ 0 0 169 1,-0.2 4,-0.1 -3,-0.1 -3,-0.0 0.643 102.2 63.6 -85.1 -21.9 -10.7 -1.2 10.2 57 906 A E S S+ 0 0 169 2,-0.1 2,-0.2 0, 0.0 -1,-0.2 0.770 92.6 79.7 -71.7 -27.1 -11.2 -4.3 12.4 58 907 A M S S- 0 0 104 1,-0.0 2,-0.7 2,-0.0 0, 0.0 -0.542 85.6-129.6 -79.3 143.9 -10.0 -6.2 9.4 59 908 A Q - 0 0 73 -2,-0.2 2,-0.5 2,-0.0 -2,-0.1 -0.888 25.9-157.2 -97.0 121.4 -6.4 -6.4 8.7 60 909 A W - 0 0 33 -2,-0.7 -23,-2.0 -25,-0.1 2,-0.4 -0.855 10.0-172.2-106.4 132.2 -5.8 -5.4 5.2 61 910 A F - 0 0 52 -2,-0.5 -25,-0.1 -25,-0.2 -26,-0.0 -0.980 19.1-128.7-128.0 137.4 -2.7 -6.4 3.3 62 911 A C > - 0 0 0 -2,-0.4 4,-3.1 1,-0.1 5,-0.3 -0.217 44.0 -89.7 -69.8 168.5 -1.6 -5.4 -0.1 63 912 A P T 4 S+ 0 0 68 0, 0.0 4,-0.5 0, 0.0 -1,-0.1 0.733 131.3 54.4 -52.2 -20.3 -0.6 -8.0 -2.8 64 913 A K T 4 S+ 0 0 93 2,-0.2 4,-0.5 1,-0.1 3,-0.4 0.960 115.7 32.2 -79.3 -56.3 2.9 -7.6 -1.3 65 914 A C T > S+ 0 0 2 1,-0.2 4,-1.5 2,-0.2 -1,-0.1 0.702 111.8 64.8 -79.0 -17.5 2.0 -8.4 2.3 66 915 A A H X S+ 0 0 42 -4,-3.1 4,-2.0 1,-0.2 -1,-0.2 0.809 99.1 55.1 -67.1 -31.2 -0.7 -10.8 1.2 67 916 A N H 4 S+ 0 0 115 -4,-0.5 -1,-0.2 -3,-0.4 -2,-0.2 0.722 102.2 55.1 -73.4 -23.0 2.2 -12.7 -0.2 68 917 A K H 4 S+ 0 0 121 -4,-0.5 -2,-0.2 1,-0.2 -1,-0.2 0.822 106.5 49.6 -74.5 -36.6 3.6 -12.6 3.4 69 918 A I H < S+ 0 0 55 -4,-1.5 2,-2.4 1,-0.2 -2,-0.2 0.899 90.3 165.6 -60.8 -43.0 0.2 -14.2 4.4 70 919 A K < - 0 0 171 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.1 -0.385 65.3 -61.4 71.4 -68.8 1.2 -16.5 1.6 71 920 A K S S+ 0 0 192 -2,-2.4 2,-1.1 -3,-0.2 -1,-0.2 0.001 128.0 67.5-176.9 -51.0 -1.2 -19.3 2.2 72 921 A D - 0 0 108 2,-0.0 2,-0.4 -3,-0.0 -1,-0.0 -0.780 67.5-179.1 -92.6 91.9 -0.2 -20.5 5.5 73 922 A K - 0 0 125 -2,-1.1 -4,-0.1 1,-0.1 -3,-0.1 -0.816 17.1-172.1 -96.5 140.6 -1.1 -17.7 7.9 74 923 A K 0 0 170 -2,-0.4 -1,-0.1 -5,-0.0 -5,-0.0 0.236 360.0 360.0-115.7 10.2 -0.4 -18.2 11.5 75 924 A H 0 0 165 -6,-0.1 -2,-0.1 0, 0.0 -6,-0.0 0.689 360.0 360.0-111.4 360.0 -2.2 -15.2 12.7