==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSPORT PROTEIN 31-MAR-08 2K2B . COMPND 2 MOLECULE: DEGENERIN MEC-4; . SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; . AUTHOR J.K.EVERETT,G.LIU,M.A.DRISCOLL,G.T.MONTELIONE,NEW YORK . 111 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7329.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 55 49.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 8.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 7.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 27.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 1 1 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M >> 0 0 111 0, 0.0 3,-1.5 0, 0.0 4,-1.0 0.000 360.0 360.0 360.0-157.4 2.7 -7.7 -0.9 2 2 A S H 3> + 0 0 78 1,-0.3 4,-2.4 2,-0.2 5,-0.1 0.776 360.0 63.4 -52.0 -31.9 -1.1 -7.7 -0.9 3 3 A W H 3> S+ 0 0 161 2,-0.2 4,-2.8 1,-0.2 -1,-0.3 0.877 96.8 56.5 -63.4 -36.6 -1.2 -5.1 -3.7 4 4 A M H <> S+ 0 0 7 -3,-1.5 4,-2.2 1,-0.2 -1,-0.2 0.893 110.1 46.3 -58.5 -38.2 0.4 -7.7 -6.0 5 5 A Q H X S+ 0 0 2 -4,-1.0 4,-1.5 63,-0.3 -2,-0.2 0.895 110.0 53.9 -68.3 -42.2 -2.5 -10.0 -5.1 6 6 A N H < S+ 0 0 56 -4,-2.4 4,-0.4 2,-0.2 -2,-0.2 0.931 114.4 39.7 -58.1 -49.8 -5.0 -7.1 -5.7 7 7 A L H >< S+ 0 0 52 -4,-2.8 3,-1.8 1,-0.2 5,-0.2 0.933 112.9 53.4 -67.9 -47.0 -3.7 -6.4 -9.3 8 8 A K H >< S+ 0 0 4 -4,-2.2 3,-0.9 1,-0.3 -1,-0.2 0.750 93.9 72.9 -63.8 -23.8 -3.2 -10.1 -10.2 9 9 A N T 3< S+ 0 0 74 -4,-1.5 -1,-0.3 1,-0.3 -2,-0.2 0.809 117.3 19.3 -57.6 -30.0 -6.9 -10.7 -9.2 10 10 A Y T < S- 0 0 127 -3,-1.8 2,-1.6 -4,-0.4 -1,-0.3 -0.513 75.8-169.3-140.9 70.1 -7.7 -8.8 -12.4 11 11 A Q < + 0 0 59 -3,-0.9 -3,-0.1 1,-0.2 -4,-0.1 -0.418 20.8 165.9 -60.1 88.4 -4.7 -8.8 -14.8 12 12 A H - 0 0 157 -2,-1.6 -1,-0.2 -5,-0.2 -4,-0.0 0.968 61.2 -24.0 -76.2 -57.7 -6.2 -6.2 -17.1 13 13 A L S S- 0 0 90 -3,-0.2 -2,-0.0 2,-0.0 0, 0.0 0.391 94.7 -65.1-122.2-103.3 -3.2 -5.1 -19.3 14 14 A R + 0 0 155 23,-0.0 -3,-0.0 22,-0.0 23,-0.0 -0.041 54.6 175.6-154.2 36.8 0.5 -5.2 -18.4 15 15 A D - 0 0 78 1,-0.2 4,-0.4 -8,-0.1 3,-0.2 -0.291 11.2-168.7 -55.5 110.3 0.9 -2.9 -15.5 16 16 A P > + 0 0 49 0, 0.0 4,-3.1 0, 0.0 5,-0.3 0.581 59.0 100.0 -81.4 -9.3 4.6 -3.2 -14.4 17 17 A S H > S+ 0 0 79 1,-0.2 4,-1.1 2,-0.2 3,-0.3 0.904 90.3 31.9 -44.0 -68.7 4.3 -1.3 -11.1 18 18 A E H > S+ 0 0 44 -3,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.862 118.7 56.6 -61.3 -35.6 4.0 -4.2 -8.7 19 19 A Y H > S+ 0 0 16 -4,-0.4 4,-1.6 1,-0.2 -1,-0.2 0.883 105.4 50.4 -64.1 -37.7 6.3 -6.4 -10.9 20 20 A M H < S+ 0 0 88 -4,-3.1 -1,-0.2 -3,-0.3 -2,-0.2 0.722 116.4 41.9 -74.0 -22.5 9.0 -3.7 -10.7 21 21 A S H < S+ 0 0 81 -4,-1.1 -2,-0.2 -5,-0.3 -1,-0.2 0.612 112.4 55.5 -92.0 -18.2 8.6 -3.7 -6.9 22 22 A Q H < S+ 0 0 4 -4,-1.6 2,-0.8 -5,-0.2 41,-0.3 0.738 78.1 110.8 -82.9 -26.9 8.3 -7.5 -6.8 23 23 A V < - 0 0 7 -4,-1.6 2,-0.9 -5,-0.2 37,-0.3 -0.324 45.7-173.7 -57.2 98.0 11.7 -8.0 -8.6 24 24 A Y S S+ 0 0 0 -2,-0.8 27,-2.6 2,-0.1 34,-0.4 -0.277 76.2 21.7 -84.0 47.0 14.0 -9.5 -6.0 25 25 A G S S- 0 0 3 -2,-0.9 34,-0.3 25,-0.3 35,-0.3 -0.487 121.6 -1.3-166.8-117.9 16.9 -9.2 -8.5 26 26 A D >> - 0 0 38 23,-0.4 3,-1.6 22,-0.3 4,-1.0 -0.880 52.7-146.1-100.4 120.5 17.5 -7.0 -11.6 27 27 A P H 3> S+ 0 0 54 0, 0.0 4,-1.3 0, 0.0 -1,-0.1 0.824 98.5 64.5 -53.8 -33.5 14.5 -4.7 -12.5 28 28 A L H 3> S+ 0 0 124 1,-0.2 4,-1.7 2,-0.2 5,-0.1 0.856 98.6 55.8 -57.6 -35.7 15.4 -5.1 -16.2 29 29 A A H <> S+ 0 0 8 -3,-1.6 4,-2.2 1,-0.2 20,-0.2 0.945 106.1 47.0 -63.9 -50.1 14.5 -8.8 -15.8 30 30 A Y H X S+ 0 0 5 -4,-1.0 4,-2.5 2,-0.2 5,-0.2 0.670 104.5 63.3 -70.7 -15.9 10.9 -8.1 -14.4 31 31 A L H X S+ 0 0 72 -4,-1.3 4,-1.8 2,-0.2 -1,-0.2 0.937 107.0 42.6 -64.9 -48.7 10.5 -5.6 -17.3 32 32 A Q H X S+ 0 0 44 -4,-1.7 4,-2.5 -3,-0.2 5,-0.4 0.906 114.0 56.5 -57.3 -43.3 10.9 -8.6 -19.6 33 33 A E H X S+ 0 0 5 -4,-2.2 4,-2.5 1,-0.2 5,-0.2 0.977 111.7 36.2 -51.2 -69.3 8.6 -10.5 -17.2 34 34 A T H < S+ 0 0 7 -4,-2.5 -1,-0.2 1,-0.2 -2,-0.2 0.801 118.1 53.9 -61.5 -31.5 5.5 -8.2 -17.2 35 35 A T H < S+ 0 0 101 -4,-1.8 -1,-0.2 -5,-0.2 -2,-0.2 0.934 117.2 32.0 -70.9 -47.5 6.0 -7.4 -20.9 36 36 A K H < S- 0 0 83 -4,-2.5 -2,-0.2 -5,-0.2 -3,-0.2 0.904 90.3-148.6 -80.8 -43.8 6.0 -11.0 -22.3 37 37 A F < - 0 0 74 -4,-2.5 -3,-0.1 -5,-0.4 -4,-0.1 0.979 68.4 -40.0 69.0 81.8 3.7 -12.7 -19.8 38 38 A V S S+ 0 0 19 -5,-0.2 2,-0.4 1,-0.1 -1,-0.2 0.559 113.5 112.9 47.2 18.5 4.9 -16.4 -19.4 39 39 A T + 0 0 83 4,-0.0 2,-0.2 2,-0.0 -1,-0.1 -0.556 54.2 60.2-123.1 69.9 5.6 -16.5 -23.2 40 40 A E > - 0 0 56 -2,-0.4 4,-1.5 1,-0.1 5,-0.1 -0.783 61.9-134.7 178.0 142.9 9.3 -16.8 -24.1 41 41 A R H >> S+ 0 0 146 -2,-0.2 3,-0.8 2,-0.2 4,-0.6 0.988 112.7 48.6 -64.1 -56.3 12.4 -19.0 -23.5 42 42 A E H >>>S+ 0 0 80 1,-0.3 5,-2.7 3,-0.2 4,-2.0 0.817 104.9 64.4 -53.5 -32.1 14.7 -16.1 -22.7 43 43 A Y H 345S+ 0 0 2 1,-0.2 -1,-0.3 3,-0.2 -2,-0.2 0.944 121.1 17.8 -53.6 -54.6 11.9 -15.1 -20.3 44 44 A Y H <<5S+ 0 0 53 -4,-1.5 57,-0.8 -3,-0.8 56,-0.4 0.061 135.7 43.0-108.6 25.0 12.4 -18.2 -18.2 45 45 A E H <<5S+ 0 0 54 -4,-0.6 -3,-0.2 -3,-0.5 -2,-0.2 0.590 125.0 11.2-134.6 -34.2 15.9 -19.1 -19.4 46 46 A D T <5S+ 0 0 96 -4,-2.0 2,-0.4 -5,-0.3 -3,-0.2 0.759 124.8 13.2-120.0 -52.2 18.1 -15.9 -19.6 47 47 A F S > - 0 0 0 37,-0.3 3,-2.5 -25,-0.2 4,-1.7 -0.530 67.1 -16.7-143.5-133.5 15.3 -12.7 -9.2 51 51 A E T 34 S+ 0 0 28 -27,-2.6 43,-2.2 1,-0.3 -26,-0.1 0.682 116.2 80.6 -54.1 -19.6 17.4 -14.4 -6.5 52 52 A C T 34 S+ 0 0 0 41,-0.3 -1,-0.3 35,-0.2 -3,-0.1 0.696 117.1 5.9 -61.2 -19.6 15.2 -17.5 -6.9 53 53 A F T <4 S+ 0 0 0 -3,-2.5 42,-1.3 41,-0.2 -2,-0.2 0.624 113.2 77.7-128.4 -54.4 17.3 -18.4 -10.0 54 54 A N S < S- 0 0 14 -4,-1.7 50,-0.2 40,-0.2 40,-0.1 -0.135 85.9-109.2 -65.9 164.5 20.3 -16.1 -10.6 55 55 A S S S+ 0 0 63 48,-0.5 2,-0.3 50,-0.5 -1,-0.1 0.078 91.7 54.2 -87.4 28.0 23.5 -16.5 -8.5 56 56 A T - 0 0 17 -6,-0.1 2,-0.4 50,-0.1 -3,-0.1 -0.931 69.0-128.5-149.8 169.7 23.0 -13.3 -6.4 57 57 A E - 0 0 117 -2,-0.3 52,-0.3 50,-0.2 -32,-0.1 -0.994 29.1-164.4-126.8 137.9 20.6 -11.3 -4.2 58 58 A S - 0 0 15 2,-0.6 -32,-0.1 -34,-0.4 -34,-0.0 -0.152 43.5 -64.9-109.6-165.3 19.7 -7.7 -4.8 59 59 A E S S+ 0 0 123 -34,-0.3 2,-0.5 -2,-0.1 -35,-0.1 0.897 122.0 54.0 -50.2 -47.9 18.2 -4.6 -3.1 60 60 A V S S- 0 0 56 -37,-0.3 -2,-0.6 -35,-0.3 2,-0.2 -0.815 83.6-145.4 -94.0 127.6 14.8 -6.4 -2.9 61 61 A Q - 0 0 119 -2,-0.5 -36,-0.1 1,-0.1 5,-0.1 -0.580 41.7 -69.1 -90.9 156.3 14.8 -9.8 -1.1 62 62 A C >> - 0 0 21 -2,-0.2 3,-1.0 -38,-0.2 4,-0.5 -0.165 40.2-140.6 -48.0 122.1 12.6 -12.7 -2.1 63 63 A E H 3> S+ 0 0 22 -41,-0.3 4,-1.7 1,-0.2 -1,-0.2 0.520 76.4 106.6 -67.3 -3.5 9.0 -11.8 -1.2 64 64 A L H 34 S+ 0 0 86 1,-0.2 -1,-0.2 24,-0.2 5,-0.1 0.829 93.0 20.2 -44.1 -44.7 8.4 -15.4 -0.0 65 65 A I H <4 S+ 0 0 142 -3,-1.0 -1,-0.2 1,-0.1 -2,-0.1 0.871 126.8 44.9 -97.4 -43.7 8.5 -14.5 3.7 66 66 A T H < S+ 0 0 93 -4,-0.5 -2,-0.2 -5,-0.1 2,-0.1 0.420 118.7 17.2 -90.1 1.8 7.8 -10.7 4.0 67 67 A G S < S- 0 0 26 -4,-1.7 2,-0.3 -66,-0.1 -5,-0.0 -0.415 77.3 -95.3-143.3-143.2 4.8 -10.5 1.5 68 68 A E + 0 0 55 -2,-0.1 -63,-0.3 1,-0.1 -64,-0.2 -0.878 44.5 137.4-159.7 115.8 2.1 -12.4 -0.4 69 69 A F + 0 0 9 -2,-0.3 20,-0.1 -5,-0.1 19,-0.1 0.399 35.2 127.8-138.2 -5.3 2.1 -13.8 -4.0 70 70 A D S > S- 0 0 40 1,-0.2 2,-2.7 -6,-0.1 3,-0.6 -0.125 78.5 -92.8 -53.8 149.7 0.5 -17.3 -3.6 71 71 A P T 3 S+ 0 0 56 0, 0.0 -1,-0.2 0, 0.0 5,-0.0 -0.381 90.5 114.7 -65.3 71.5 -2.5 -18.1 -5.9 72 72 A K T 3 S+ 0 0 137 -2,-2.7 -2,-0.0 3,-0.0 -67,-0.0 0.771 88.1 18.4-106.2 -53.0 -5.1 -16.9 -3.4 73 73 A L S < S+ 0 0 81 -3,-0.6 -3,-0.0 2,-0.1 -4,-0.0 0.458 105.8 105.7 -94.7 -4.8 -6.8 -13.9 -5.1 74 74 A L S S- 0 0 17 -4,-0.3 -65,-0.2 1,-0.1 -64,-0.1 -0.650 77.4-118.4 -81.6 123.5 -5.4 -15.0 -8.5 75 75 A P - 0 0 60 0, 0.0 2,-1.1 0, 0.0 6,-0.1 -0.309 44.0 -91.4 -55.5 141.5 -8.0 -16.5 -10.9 76 76 A Y + 0 0 211 4,-0.1 2,-0.4 5,-0.0 -2,-0.0 -0.426 63.1 149.5 -70.7 96.5 -7.2 -20.1 -11.8 77 77 A D > - 0 0 89 -2,-1.1 4,-3.3 1,-0.1 5,-0.3 -0.948 30.7-159.4-119.0 108.3 -5.0 -20.2 -14.9 78 78 A K H > S+ 0 0 188 -2,-0.4 4,-2.6 1,-0.2 5,-0.2 0.882 89.0 48.7 -59.6 -45.5 -2.8 -23.3 -14.6 79 79 A R H > S+ 0 0 198 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.911 117.9 42.4 -60.0 -42.7 -0.1 -22.1 -17.1 80 80 A L H > S+ 0 0 26 2,-0.2 4,-2.9 1,-0.2 5,-0.3 0.963 114.9 47.9 -68.7 -53.8 0.1 -18.7 -15.4 81 81 A A H X S+ 0 0 20 -4,-3.3 4,-2.0 1,-0.2 -2,-0.2 0.880 110.5 54.5 -54.9 -41.0 -0.0 -20.0 -11.8 82 82 A W H X S+ 0 0 115 -4,-2.6 4,-2.5 -5,-0.3 -1,-0.2 0.941 112.3 41.7 -59.1 -50.3 2.7 -22.6 -12.7 83 83 A H H X S+ 0 0 17 -4,-1.8 4,-2.7 2,-0.2 5,-0.3 0.946 113.4 50.9 -65.8 -48.0 5.1 -19.9 -14.0 84 84 A F H X>S+ 0 0 24 -4,-2.9 4,-2.0 1,-0.2 5,-1.0 0.850 113.0 49.1 -58.6 -32.4 4.4 -17.4 -11.2 85 85 A K H <5S+ 0 0 87 -4,-2.0 -1,-0.2 -5,-0.3 -2,-0.2 0.919 109.2 53.0 -65.3 -46.9 5.1 -20.4 -8.9 86 86 A E H <5S+ 0 0 8 -4,-2.5 -2,-0.2 1,-0.2 -3,-0.2 0.932 120.2 30.5 -55.1 -52.5 8.3 -21.1 -10.8 87 87 A F H <5S+ 0 0 1 -4,-2.7 3,-0.3 2,-0.1 -37,-0.3 0.946 137.3 20.4 -75.3 -51.0 9.7 -17.5 -10.5 88 88 A C T <5S+ 0 0 6 -4,-2.0 2,-1.3 -5,-0.3 -3,-0.2 0.947 120.6 51.5 -87.8 -54.2 8.2 -16.5 -7.1 89 89 A Y S