==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 01-OCT-01 1K33 . COMPND 2 MOLECULE: TRANSMEMBRANE GLYCOPROTEIN GP41; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR W.SHU,M.LU . 62 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4776.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 85.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 48 77.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A S 0 0 79 0, 0.0 58,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -72.5 10.1 4.5 22.6 2 2 A G > - 0 0 47 1,-0.1 4,-1.9 4,-0.0 5,-0.1 -0.093 360.0 -99.1 -75.2 179.5 6.8 4.2 24.5 3 3 A I H > S+ 0 0 69 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.930 122.3 48.6 -65.8 -46.6 3.6 2.6 23.2 4 4 A V H > S+ 0 0 96 2,-0.2 4,-2.3 1,-0.2 5,-0.2 0.933 111.1 49.1 -60.0 -49.4 2.0 5.9 22.3 5 5 A Q H > S+ 0 0 73 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.911 112.9 48.2 -57.6 -43.5 5.1 7.1 20.4 6 6 A Q H X S+ 0 0 37 -4,-1.9 4,-2.6 1,-0.2 -1,-0.2 0.905 109.0 53.5 -64.0 -41.3 5.3 3.9 18.5 7 7 A Q H X S+ 0 0 124 -4,-2.6 4,-2.0 1,-0.2 -1,-0.2 0.879 109.2 49.0 -60.4 -39.3 1.5 4.1 17.7 8 8 A N H X S+ 0 0 66 -4,-2.3 4,-2.5 2,-0.2 -1,-0.2 0.883 109.9 51.8 -68.1 -38.0 2.1 7.5 16.2 9 9 A N H X S+ 0 0 1 -4,-2.0 4,-2.2 2,-0.2 -2,-0.2 0.925 109.3 49.4 -63.4 -46.4 5.0 6.3 14.2 10 10 A L H X S+ 0 0 87 -4,-2.6 4,-2.3 1,-0.2 -1,-0.2 0.895 110.7 50.7 -61.1 -40.8 2.9 3.5 12.8 11 11 A L H X S+ 0 0 89 -4,-2.0 4,-2.6 1,-0.2 -1,-0.2 0.927 109.2 49.7 -64.7 -43.2 0.1 5.9 11.9 12 12 A R H X S+ 0 0 91 -4,-2.5 4,-2.4 1,-0.2 -1,-0.2 0.895 110.4 51.6 -62.0 -36.6 2.5 8.2 10.1 13 13 A A H X S+ 0 0 11 -4,-2.2 4,-2.5 2,-0.2 -1,-0.2 0.923 110.5 48.0 -64.4 -44.2 3.9 5.2 8.2 14 14 A I H X S+ 0 0 101 -4,-2.3 4,-2.1 2,-0.2 -2,-0.2 0.894 110.9 51.5 -63.3 -40.6 0.3 4.3 7.1 15 15 A E H X S+ 0 0 97 -4,-2.6 4,-1.7 2,-0.2 -2,-0.2 0.917 111.4 46.6 -63.2 -43.4 -0.4 7.8 6.1 16 16 A A H X S+ 0 0 4 -4,-2.4 4,-1.9 1,-0.2 -2,-0.2 0.907 111.5 51.7 -65.9 -42.0 2.7 8.0 3.9 17 17 A Q H X S+ 0 0 96 -4,-2.5 4,-2.7 1,-0.2 -1,-0.2 0.871 105.5 56.5 -63.6 -34.2 1.9 4.6 2.4 18 18 A Q H X S+ 0 0 85 -4,-2.1 4,-2.6 2,-0.2 -1,-0.2 0.912 105.0 51.2 -63.9 -41.3 -1.6 5.9 1.6 19 19 A H H X S+ 0 0 87 -4,-1.7 4,-1.7 2,-0.2 -1,-0.2 0.919 112.8 45.6 -60.8 -42.7 -0.2 8.8 -0.4 20 20 A L H X S+ 0 0 39 -4,-1.9 4,-2.0 2,-0.2 -2,-0.2 0.891 111.4 53.3 -67.3 -38.3 2.0 6.3 -2.4 21 21 A L H X S+ 0 0 95 -4,-2.7 4,-2.2 1,-0.2 -2,-0.2 0.913 107.6 50.8 -62.7 -41.6 -1.0 4.0 -2.8 22 22 A Q H X S+ 0 0 109 -4,-2.6 4,-2.4 1,-0.2 -1,-0.2 0.865 106.7 54.8 -65.1 -34.8 -3.0 6.9 -4.2 23 23 A L H X S+ 0 0 31 -4,-1.7 4,-2.5 1,-0.2 -1,-0.2 0.914 109.5 47.0 -64.0 -42.3 -0.2 7.7 -6.7 24 24 A T H X S+ 0 0 52 -4,-2.0 4,-2.4 2,-0.2 -2,-0.2 0.879 110.8 51.1 -68.4 -36.9 -0.3 4.1 -8.0 25 25 A V H X S+ 0 0 72 -4,-2.2 4,-2.2 2,-0.2 -2,-0.2 0.943 113.0 46.9 -63.8 -44.1 -4.1 4.0 -8.3 26 26 A W H X S+ 0 0 133 -4,-2.4 4,-2.0 1,-0.2 -2,-0.2 0.905 110.9 52.1 -62.6 -43.2 -3.8 7.3 -10.3 27 27 A G H X S+ 0 0 4 -4,-2.5 4,-1.4 1,-0.2 -1,-0.2 0.899 109.1 49.0 -61.5 -42.5 -1.0 5.9 -12.4 28 28 A I H X S+ 0 0 108 -4,-2.4 4,-1.0 1,-0.2 3,-0.3 0.911 108.6 53.8 -64.2 -41.2 -3.0 2.8 -13.3 29 29 A K H >< S+ 0 0 124 -4,-2.2 3,-0.7 1,-0.2 -1,-0.2 0.905 107.8 51.2 -59.5 -39.0 -6.0 5.0 -14.2 30 30 A Q H 3< S+ 0 0 99 -4,-2.0 -1,-0.2 1,-0.2 -2,-0.2 0.801 108.3 52.0 -67.6 -29.7 -3.8 7.0 -16.6 31 31 A L H 3< 0 0 128 -4,-1.4 -1,-0.2 -3,-0.3 -2,-0.2 0.610 360.0 360.0 -82.3 -13.7 -2.5 3.8 -18.2 32 32 A Q << 0 0 187 -4,-1.0 -1,-0.2 -3,-0.7 -2,-0.2 0.931 360.0 360.0 -60.5 360.0 -6.1 2.5 -18.9 33 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 34 37 A G 0 0 123 0, 0.0 2,-3.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -38.2 5.6 9.8 -23.1 35 38 A R > + 0 0 46 1,-0.2 3,-2.3 2,-0.1 4,-0.2 -0.330 360.0 68.3 71.3 -65.8 7.9 9.5 -20.1 36 39 A G G > S+ 0 0 65 -2,-3.0 3,-1.2 1,-0.3 -1,-0.2 0.804 92.5 60.9 -55.3 -30.7 8.4 13.2 -19.7 37 40 A G G 3 S+ 0 0 79 1,-0.2 -1,-0.3 2,-0.1 4,-0.2 0.609 98.9 58.1 -73.3 -10.4 4.8 13.5 -18.7 38 41 A W G <> S+ 0 0 67 -3,-2.3 4,-2.9 1,-0.2 -1,-0.2 0.343 72.8 106.4 -98.9 4.1 5.5 11.2 -15.7 39 42 A M H <> S+ 0 0 144 -3,-1.2 4,-2.1 1,-0.2 -1,-0.2 0.864 82.4 42.5 -51.8 -46.5 8.2 13.4 -14.2 40 43 A E H > S+ 0 0 107 -3,-0.2 4,-2.9 2,-0.2 5,-0.2 0.907 113.6 52.3 -69.7 -41.4 6.1 14.7 -11.3 41 44 A W H > S+ 0 0 61 -4,-0.2 4,-3.0 1,-0.2 5,-0.2 0.939 111.7 47.3 -58.9 -46.9 4.6 11.3 -10.6 42 45 A D H X S+ 0 0 71 -4,-2.9 4,-2.6 2,-0.2 5,-0.2 0.911 111.3 51.4 -59.4 -45.1 8.1 9.8 -10.5 43 46 A R H X S+ 0 0 128 -4,-2.1 4,-2.4 -5,-0.2 -2,-0.2 0.948 114.1 43.0 -57.5 -51.1 9.3 12.6 -8.2 44 47 A E H X S+ 0 0 42 -4,-2.9 4,-2.9 2,-0.2 5,-0.3 0.920 113.1 51.4 -62.5 -47.5 6.4 12.1 -5.8 45 48 A A H X S+ 0 0 9 -4,-3.0 4,-1.9 -5,-0.2 -1,-0.2 0.918 113.3 45.6 -57.5 -44.6 6.6 8.3 -5.8 46 49 A N H X S+ 0 0 102 -4,-2.6 4,-2.2 -5,-0.2 -1,-0.2 0.908 112.9 49.7 -66.8 -41.6 10.4 8.5 -5.1 47 50 A N H X S+ 0 0 83 -4,-2.4 4,-2.3 -5,-0.2 -2,-0.2 0.911 112.9 45.9 -65.1 -42.5 9.9 11.1 -2.3 48 51 A Y H X S+ 0 0 54 -4,-2.9 4,-2.8 2,-0.2 5,-0.2 0.860 110.1 54.8 -69.5 -33.2 7.2 9.1 -0.6 49 52 A T H X S+ 0 0 48 -4,-1.9 4,-2.2 -5,-0.3 -2,-0.2 0.934 111.3 44.6 -63.6 -43.9 9.2 5.9 -0.9 50 53 A S H X S+ 0 0 78 -4,-2.2 4,-2.0 2,-0.2 -2,-0.2 0.884 112.9 52.2 -66.5 -37.4 12.1 7.6 0.9 51 54 A L H X S+ 0 0 75 -4,-2.3 4,-2.0 2,-0.2 -2,-0.2 0.930 110.5 46.9 -63.3 -46.5 9.7 9.1 3.5 52 55 A I H X S+ 0 0 9 -4,-2.8 4,-2.8 1,-0.2 5,-0.2 0.893 108.6 56.3 -63.2 -39.7 8.2 5.7 4.2 53 56 A H H X S+ 0 0 102 -4,-2.2 4,-2.6 1,-0.2 -1,-0.2 0.920 108.1 47.4 -58.2 -44.8 11.7 4.1 4.5 54 57 A S H X S+ 0 0 61 -4,-2.0 4,-2.1 1,-0.2 -1,-0.2 0.897 112.3 50.3 -65.0 -38.6 12.6 6.7 7.1 55 58 A L H X S+ 0 0 13 -4,-2.0 4,-2.1 2,-0.2 -2,-0.2 0.890 111.7 46.9 -67.6 -40.1 9.4 6.0 9.0 56 59 A I H X S+ 0 0 66 -4,-2.8 4,-2.9 2,-0.2 5,-0.2 0.940 112.0 49.7 -67.1 -46.9 9.9 2.2 9.0 57 60 A E H X S+ 0 0 121 -4,-2.6 4,-2.2 1,-0.2 -2,-0.2 0.901 111.1 50.6 -59.2 -39.3 13.5 2.4 10.1 58 61 A E H X S+ 0 0 75 -4,-2.1 4,-1.6 -5,-0.2 -1,-0.2 0.929 111.5 47.6 -62.9 -45.4 12.5 4.8 12.9 59 62 A S H < S+ 0 0 11 -4,-2.1 -2,-0.2 1,-0.2 -1,-0.2 0.883 110.9 51.1 -63.5 -39.9 9.7 2.3 14.0 60 63 A Q H >< S+ 0 0 131 -4,-2.9 3,-1.6 1,-0.2 -1,-0.2 0.897 108.4 52.6 -63.6 -40.4 12.2 -0.6 13.8 61 64 A N H 3< S+ 0 0 147 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.821 106.5 52.0 -64.9 -32.6 14.6 1.4 16.0 62 65 A Q T 3< 0 0 24 -4,-1.6 -1,-0.3 -5,-0.1 -2,-0.2 0.106 360.0 360.0 -90.0 21.9 11.9 2.0 18.6 63 66 A Q < 0 0 113 -3,-1.6 -1,-0.1 -5,-0.1 -4,-0.1 -0.462 360.0 360.0 79.6 360.0 11.3 -1.8 18.5