==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 01-OCT-01 1K34 . COMPND 2 MOLECULE: TRANSMEMBRANE GLYCOPROTEIN GP41; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR W.SHU,M.LU . 60 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5148.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 83.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 49 81.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A G > 0 0 92 0, 0.0 4,-1.7 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0-121.3 0.2 -8.0 23.6 2 3 A I H > + 0 0 131 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.823 360.0 58.7 -65.6 -31.6 0.2 -4.6 21.9 3 4 A V H > S+ 0 0 94 2,-0.2 4,-1.9 1,-0.2 -1,-0.2 0.937 106.7 45.3 -63.5 -47.9 3.9 -4.8 21.3 4 5 A Q H > S+ 0 0 66 1,-0.2 4,-2.0 2,-0.2 -1,-0.2 0.865 112.5 54.3 -63.2 -35.7 3.6 -8.1 19.3 5 6 A Q H X S+ 0 0 95 -4,-1.7 4,-2.6 2,-0.2 -2,-0.2 0.923 106.6 49.3 -64.4 -46.0 0.7 -6.4 17.4 6 7 A Q H X S+ 0 0 111 -4,-2.5 4,-2.5 1,-0.2 -1,-0.2 0.860 109.5 52.4 -62.8 -36.3 2.7 -3.4 16.4 7 8 A N H X S+ 0 0 38 -4,-1.9 4,-2.2 2,-0.2 -1,-0.2 0.907 109.7 50.1 -64.9 -40.3 5.5 -5.7 15.2 8 9 A N H X S+ 0 0 75 -4,-2.0 4,-1.9 1,-0.2 -2,-0.2 0.923 111.3 48.4 -61.2 -47.2 2.8 -7.5 13.1 9 10 A L H X S+ 0 0 98 -4,-2.6 4,-2.2 1,-0.2 -2,-0.2 0.892 110.3 50.7 -62.9 -41.7 1.5 -4.2 11.7 10 11 A L H X S+ 0 0 11 -4,-2.5 4,-2.3 1,-0.2 -1,-0.2 0.921 109.7 50.2 -63.5 -44.1 5.0 -3.0 10.8 11 12 A R H X S+ 0 0 141 -4,-2.2 4,-2.2 2,-0.2 -1,-0.2 0.873 109.4 51.6 -61.9 -36.7 5.8 -6.3 8.9 12 13 A A H X S+ 0 0 48 -4,-1.9 4,-2.2 1,-0.2 -1,-0.2 0.919 110.7 48.3 -65.7 -41.6 2.6 -6.0 7.0 13 14 A I H X S+ 0 0 81 -4,-2.2 4,-1.7 1,-0.2 -2,-0.2 0.860 110.1 52.4 -65.7 -35.7 3.5 -2.4 6.0 14 15 A E H X S+ 0 0 45 -4,-2.3 4,-1.4 2,-0.2 -1,-0.2 0.893 110.0 47.9 -67.7 -39.4 7.0 -3.6 5.0 15 16 A A H X S+ 0 0 55 -4,-2.2 4,-1.7 1,-0.2 -2,-0.2 0.885 112.0 49.8 -68.0 -38.7 5.5 -6.3 2.8 16 17 A Q H X S+ 0 0 118 -4,-2.2 4,-2.4 1,-0.2 -1,-0.2 0.819 104.0 59.1 -70.2 -28.5 3.1 -3.8 1.2 17 18 A Q H X S+ 0 0 26 -4,-1.7 4,-2.3 2,-0.2 -1,-0.2 0.889 105.5 50.1 -66.1 -37.1 6.0 -1.4 0.6 18 19 A H H X S+ 0 0 134 -4,-1.4 4,-2.3 2,-0.2 -2,-0.2 0.916 109.7 49.9 -65.7 -42.9 7.6 -4.2 -1.5 19 20 A L H X S+ 0 0 107 -4,-1.7 4,-2.6 2,-0.2 -2,-0.2 0.897 110.0 51.4 -61.9 -40.8 4.3 -4.6 -3.5 20 21 A L H X S+ 0 0 99 -4,-2.4 4,-2.5 2,-0.2 5,-0.2 0.926 108.9 50.4 -61.6 -45.2 4.2 -0.9 -4.0 21 22 A Q H X S+ 0 0 55 -4,-2.3 4,-2.4 1,-0.2 -1,-0.2 0.901 111.8 49.2 -59.5 -41.6 7.7 -0.9 -5.4 22 23 A L H X S+ 0 0 110 -4,-2.3 4,-2.5 2,-0.2 -2,-0.2 0.911 111.1 47.1 -66.6 -43.6 6.8 -3.8 -7.7 23 24 A T H X S+ 0 0 78 -4,-2.6 4,-2.4 2,-0.2 -1,-0.2 0.887 112.0 51.4 -66.9 -36.6 3.6 -2.1 -9.1 24 25 A V H X S+ 0 0 21 -4,-2.5 4,-2.3 -5,-0.2 -2,-0.2 0.951 110.9 48.8 -61.8 -46.9 5.6 1.2 -9.6 25 26 A W H X S+ 0 0 159 -4,-2.4 4,-1.8 1,-0.2 -2,-0.2 0.911 110.9 50.7 -58.9 -42.9 8.2 -0.8 -11.5 26 27 A G H X S+ 0 0 25 -4,-2.5 4,-1.8 1,-0.2 -1,-0.2 0.898 108.8 50.4 -63.1 -42.0 5.5 -2.5 -13.6 27 28 A I H X S+ 0 0 72 -4,-2.4 4,-2.0 1,-0.2 -1,-0.2 0.909 108.2 53.0 -63.4 -41.8 3.9 0.8 -14.5 28 29 A K H < S+ 0 0 76 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.877 108.0 52.0 -61.6 -35.8 7.3 2.2 -15.6 29 30 A Q H >< S+ 0 0 113 -4,-1.8 3,-0.7 1,-0.2 -1,-0.2 0.871 109.4 49.9 -68.0 -36.2 7.8 -0.8 -17.8 30 31 A L H 3< S+ 0 0 144 -4,-1.8 -2,-0.2 1,-0.2 -1,-0.2 0.840 92.2 72.3 -72.9 -34.1 4.3 -0.3 -19.5 31 32 A Q T 3< 0 0 69 -4,-2.0 -1,-0.2 -5,-0.1 -2,-0.1 0.237 360.0 360.0 -68.6 21.6 4.8 3.4 -20.2 32 33 A A < 0 0 124 -3,-0.7 -3,-0.1 0, 0.0 -4,-0.0 -0.553 360.0 360.0-168.7 360.0 7.2 2.1 -22.9 33 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 34 39 A G 0 0 116 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 96.7 8.4 12.4 -21.3 35 40 A G + 0 0 84 0, 0.0 3,-0.3 0, 0.0 4,-0.2 0.153 360.0 82.7 97.3 -20.0 5.3 13.8 -19.5 36 41 A W > + 0 0 106 1,-0.2 4,-3.0 2,-0.1 5,-0.2 0.191 54.1 111.1-100.1 12.9 5.8 11.6 -16.4 37 42 A M H > S+ 0 0 154 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.896 81.1 42.4 -55.2 -46.7 8.3 13.9 -14.8 38 43 A E H > S+ 0 0 109 -3,-0.3 4,-2.8 2,-0.2 5,-0.2 0.919 113.3 53.2 -67.8 -42.6 6.0 15.0 -11.9 39 44 A W H > S+ 0 0 73 -4,-0.2 4,-2.8 1,-0.2 5,-0.2 0.946 110.7 47.7 -55.7 -49.2 4.7 11.5 -11.4 40 45 A D H X S+ 0 0 51 -4,-3.0 4,-2.8 1,-0.2 -1,-0.2 0.909 111.3 51.2 -57.3 -45.8 8.3 10.3 -11.1 41 46 A R H X S+ 0 0 128 -4,-2.1 4,-2.4 -5,-0.2 -1,-0.2 0.923 113.1 44.1 -58.6 -48.0 9.1 13.1 -8.7 42 47 A E H X S+ 0 0 54 -4,-2.8 4,-3.0 2,-0.2 5,-0.3 0.913 112.9 50.9 -65.5 -45.1 6.1 12.3 -6.4 43 48 A I H X S+ 0 0 35 -4,-2.8 4,-2.2 -5,-0.2 5,-0.2 0.949 112.5 47.5 -57.2 -49.2 6.7 8.5 -6.5 44 49 A N H X S+ 0 0 84 -4,-2.8 4,-2.3 -5,-0.2 -2,-0.2 0.921 114.0 46.9 -59.6 -44.8 10.3 9.1 -5.5 45 50 A N H X S+ 0 0 79 -4,-2.4 4,-2.4 1,-0.2 -2,-0.2 0.933 115.7 42.7 -65.3 -46.8 9.5 11.5 -2.7 46 51 A Y H X S+ 0 0 149 -4,-3.0 4,-2.4 2,-0.2 -1,-0.2 0.800 113.8 52.8 -71.6 -26.0 6.7 9.3 -1.2 47 52 A T H X S+ 0 0 47 -4,-2.2 4,-2.5 -5,-0.3 -2,-0.2 0.912 112.4 44.6 -72.4 -42.7 8.8 6.2 -1.6 48 53 A S H X S+ 0 0 74 -4,-2.3 4,-2.5 -5,-0.2 -2,-0.2 0.889 113.6 51.4 -66.6 -39.6 11.7 7.8 0.2 49 54 A L H X S+ 0 0 87 -4,-2.4 4,-2.2 2,-0.2 -2,-0.2 0.964 112.1 45.3 -61.0 -51.9 9.3 9.2 2.9 50 55 A A H X S+ 0 0 24 -4,-2.4 4,-2.8 1,-0.2 -2,-0.2 0.916 111.9 52.9 -57.3 -46.4 7.7 5.8 3.4 51 56 A H H X S+ 0 0 80 -4,-2.5 4,-3.0 1,-0.2 5,-0.2 0.929 108.7 49.2 -55.8 -47.8 11.2 4.1 3.6 52 57 A S H X S+ 0 0 60 -4,-2.5 4,-2.1 1,-0.2 -1,-0.2 0.886 111.9 48.8 -61.8 -38.7 12.4 6.6 6.2 53 58 A L H X S+ 0 0 88 -4,-2.2 4,-2.1 2,-0.2 -1,-0.2 0.903 112.2 49.1 -68.2 -39.8 9.3 5.9 8.3 54 59 A I H X S+ 0 0 21 -4,-2.8 4,-2.9 2,-0.2 5,-0.2 0.957 111.7 47.5 -63.1 -51.2 9.7 2.2 8.0 55 60 A E H X S+ 0 0 121 -4,-3.0 4,-2.3 1,-0.2 5,-0.2 0.892 111.8 51.3 -58.0 -39.5 13.4 2.3 9.0 56 61 A E H X S+ 0 0 127 -4,-2.1 4,-2.0 -5,-0.2 -1,-0.2 0.881 111.8 46.9 -64.6 -39.1 12.5 4.6 11.9 57 62 A S H X S+ 0 0 46 -4,-2.1 4,-2.8 2,-0.2 -2,-0.2 0.899 110.8 51.9 -69.9 -41.4 9.8 2.1 13.0 58 63 A Q H < S+ 0 0 98 -4,-2.9 -2,-0.2 1,-0.2 -1,-0.2 0.913 113.3 44.3 -60.8 -44.5 12.2 -0.9 12.7 59 64 A N H < S+ 0 0 149 -4,-2.3 -1,-0.2 -5,-0.2 -2,-0.2 0.878 114.3 50.3 -68.3 -37.8 14.8 0.8 14.8 60 65 A Q H < 0 0 99 -4,-2.0 -2,-0.2 -5,-0.2 -1,-0.2 0.882 360.0 360.0 -67.7 -39.9 12.2 1.9 17.3 61 66 A Q < 0 0 94 -4,-2.8 -2,-0.2 -5,-0.1 -3,-0.2 0.899 360.0 360.0 -78.9 360.0 10.7 -1.6 17.6