==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SIGNALING PROTEIN 25-APR-08 2K39 . COMPND 2 MOLECULE: UBIQUITIN; . SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; . AUTHOR O.F.LANGE,N.A.LAKOMEK,C.FARES,G.SCHRODER,K.WALTER,S.BECKER, . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5209.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 63.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 6.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 21.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 56 0, 0.0 16,-2.1 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 112.6 13.7 30.3 18.1 2 2 A Q E +A 16 0A 100 14,-0.2 62,-2.6 12,-0.1 63,-0.4 -0.631 360.0 176.7 -72.1 134.2 16.0 32.6 20.2 3 3 A I E -A 15 0A 0 12,-1.9 12,-1.8 -2,-0.3 2,-0.3 -0.870 15.7-145.9-132.8 157.6 18.8 30.6 21.8 4 4 A F E -Ab 14 66A 49 61,-2.1 63,-1.4 -2,-0.3 2,-0.4 -0.861 4.1-158.9-121.0 151.0 21.8 31.7 23.9 5 5 A V E -Ab 13 67A 4 8,-2.5 8,-2.5 -2,-0.3 2,-0.5 -0.981 9.7-148.2-132.2 135.3 25.3 30.4 24.2 6 6 A K E -Ab 12 68A 135 61,-2.7 63,-1.8 -2,-0.4 2,-0.4 -0.956 15.6-148.9-103.6 120.3 27.5 31.2 27.2 7 7 A T E > - b 0 69A 18 4,-2.2 3,-3.3 -2,-0.5 4,-0.2 -0.775 23.2-116.8 -97.3 137.2 31.2 31.4 26.4 8 8 A L T 3 S+ 0 0 128 61,-1.0 -1,-0.1 -2,-0.4 62,-0.1 0.609 113.8 59.2 -27.0 -43.1 34.0 30.4 28.9 9 9 A T T 3 S- 0 0 116 2,-0.1 -1,-0.3 1,-0.0 -3,-0.0 0.678 123.2 -99.5 -83.0 -16.3 35.2 34.0 28.9 10 10 A G S < S+ 0 0 60 -3,-3.3 2,-0.2 1,-0.3 -2,-0.2 0.304 76.7 137.9 114.2 -4.5 31.9 35.5 30.2 11 11 A K - 0 0 101 -4,-0.2 -4,-2.2 1,-0.0 2,-0.5 -0.540 44.1-144.7 -80.6 132.6 30.5 36.7 26.8 12 12 A T E -A 6 0A 101 -2,-0.2 2,-0.4 -6,-0.2 -6,-0.2 -0.856 18.4-174.9-105.1 128.3 26.9 36.1 26.0 13 13 A I E -A 5 0A 13 -8,-2.5 -8,-2.5 -2,-0.5 2,-0.4 -0.983 2.5-168.3-129.4 135.3 26.0 35.3 22.4 14 14 A T E -A 4 0A 61 -2,-0.4 2,-0.3 -10,-0.2 -10,-0.2 -0.981 5.0-178.1-127.2 147.0 22.5 34.9 21.0 15 15 A L E -A 3 0A 13 -12,-1.8 -12,-1.9 -2,-0.4 2,-0.5 -0.999 26.7-132.3-143.2 129.9 21.3 33.6 17.6 16 16 A E E +A 2 0A 149 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.784 45.8 163.0 -75.5 123.7 17.7 33.2 16.2 17 17 A V - 0 0 8 -16,-2.1 3,-0.0 -2,-0.5 -2,-0.0 -0.860 39.0-114.1-137.2 173.8 17.7 29.7 14.8 18 18 A E > - 0 0 123 -2,-0.3 3,-0.9 1,-0.1 38,-0.2 -0.852 24.6-125.8-105.5 154.4 15.1 27.1 13.7 19 19 A P T 3 S+ 0 0 46 0, 0.0 38,-1.7 0, 0.0 37,-0.2 0.783 107.5 62.3 -70.1 -29.4 14.7 23.8 15.8 20 20 A S T 3 S+ 0 0 99 36,-0.2 2,-0.3 35,-0.1 38,-0.0 0.493 81.5 106.3 -71.9 -16.6 15.2 21.6 12.6 21 21 A D S < S- 0 0 41 -3,-0.9 35,-1.6 1,-0.1 36,-0.2 -0.508 75.9-114.3 -65.4 132.9 18.8 23.0 12.1 22 22 A T B > -E 55 0B 61 -2,-0.3 4,-0.9 33,-0.2 33,-0.2 -0.136 18.5-120.3 -43.8 149.2 21.7 20.7 12.9 23 23 A I H > S+ 0 0 5 31,-1.2 4,-1.1 28,-0.3 3,-0.4 0.877 112.9 63.9 -66.4 -39.7 24.0 21.6 15.8 24 24 A E H > S+ 0 0 119 30,-0.3 4,-0.9 1,-0.2 -1,-0.2 0.763 96.8 56.5 -54.9 -37.9 26.9 21.7 13.1 25 25 A N H >> S+ 0 0 57 2,-0.2 4,-2.3 1,-0.2 3,-0.7 0.949 105.2 49.7 -53.7 -49.3 25.3 24.6 11.4 26 26 A V H 3X S+ 0 0 7 -4,-0.9 4,-0.9 -3,-0.4 -2,-0.2 0.648 105.7 57.4 -75.4 -13.9 25.3 26.7 14.6 27 27 A K H 3< S+ 0 0 46 -4,-1.1 4,-0.4 2,-0.2 -1,-0.3 0.797 111.8 42.7 -78.2 -32.4 29.0 25.9 15.2 28 28 A A H XX S+ 0 0 36 -4,-0.9 4,-2.1 -3,-0.7 3,-0.9 0.868 105.9 61.2 -86.9 -29.2 29.7 27.5 11.7 29 29 A K H 3X S+ 0 0 73 -4,-2.3 4,-2.0 1,-0.3 -2,-0.2 0.855 103.3 52.9 -63.6 -32.2 27.2 30.4 12.4 30 30 A I H 3X>S+ 0 0 0 -4,-0.9 4,-3.0 2,-0.2 5,-2.0 0.737 104.0 54.6 -66.0 -28.7 29.7 31.2 15.3 31 31 A Q H <45S+ 0 0 98 -3,-0.9 4,-0.2 -4,-0.4 -2,-0.2 0.963 112.4 44.3 -73.9 -38.7 32.6 31.2 12.7 32 32 A D H <5S+ 0 0 123 -4,-2.1 -2,-0.2 1,-0.2 -1,-0.2 0.895 126.8 31.4 -52.9 -48.8 30.6 33.8 10.7 33 33 A K H <5S+ 0 0 125 -4,-2.0 -2,-0.2 -5,-0.1 -3,-0.2 0.821 136.8 13.7 -89.0 -37.1 29.7 35.8 13.8 34 34 A E T <5S- 0 0 80 -4,-3.0 -3,-0.2 2,-0.2 -2,-0.1 0.588 96.1-114.8-136.8 -14.7 32.6 35.4 16.3 35 35 A G < + 0 0 57 -5,-2.0 -4,-0.3 1,-0.3 -3,-0.1 0.532 66.2 135.4 106.1 8.3 35.3 34.0 14.2 36 36 A I - 0 0 37 -6,-0.9 -1,-0.3 -9,-0.1 -2,-0.2 -0.704 50.5-123.0-101.6 133.1 35.7 30.5 15.9 37 37 A P > - 0 0 57 0, 0.0 4,-0.6 0, 0.0 3,-0.4 -0.439 13.1-125.6 -75.2 150.9 36.1 27.3 13.9 38 38 A P T >4 S+ 0 0 38 0, 0.0 3,-0.5 0, 0.0 -10,-0.1 0.812 100.6 68.5 -46.9 -40.2 33.8 24.2 14.2 39 39 A D T 34 S+ 0 0 134 1,-0.2 -3,-0.0 3,-0.0 -12,-0.0 0.783 105.4 33.4 -58.3 -44.4 36.7 21.8 14.9 40 40 A Q T 34 S+ 0 0 57 -3,-0.4 32,-3.5 31,-0.0 2,-0.4 0.550 101.4 96.3-100.4 -1.4 37.8 23.0 18.3 41 41 A Q E << +C 71 0A 3 -4,-0.6 2,-0.4 -3,-0.5 30,-0.2 -0.739 45.6 178.0 -95.7 125.8 34.3 23.9 19.5 42 42 A R E -C 70 0A 78 28,-1.7 28,-2.1 -2,-0.4 2,-0.4 -0.989 18.1-146.2-124.3 132.8 32.2 21.5 21.6 43 43 A L E -C 69 0A 8 7,-0.5 7,-2.5 -2,-0.4 2,-0.4 -0.885 6.4-152.2-111.8 151.2 28.7 22.6 22.8 44 44 A I E +CD 68 49A 32 24,-2.6 24,-2.3 -2,-0.4 2,-0.3 -0.896 16.9 169.3-129.9 131.5 26.9 21.8 26.0 45 45 A F E > S- D 0 48A 40 3,-1.6 3,-1.6 -2,-0.4 22,-0.1 -0.929 77.3 -14.0-142.3 118.4 23.2 21.5 26.9 46 46 A A T 3 S- 0 0 78 -2,-0.3 3,-0.1 1,-0.3 21,-0.1 0.707 127.7 -54.5 65.6 27.1 21.8 20.0 30.2 47 47 A G T 3 S+ 0 0 63 1,-0.3 2,-0.3 0, 0.0 -1,-0.3 0.137 113.3 111.6 102.5 -20.5 25.2 18.5 30.9 48 48 A K E < -D 45 0A 102 -3,-1.6 -3,-1.6 1,-0.0 2,-0.4 -0.626 68.9-122.9 -94.7 143.4 25.6 16.6 27.7 49 49 A Q E -D 44 0A 73 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.694 33.0-129.3 -71.3 137.4 28.0 17.2 24.9 50 50 A L - 0 0 10 -7,-2.5 -7,-0.5 -2,-0.4 2,-0.2 -0.738 29.8-153.1-104.6 140.4 26.0 17.7 21.7 51 51 A E > - 0 0 61 -2,-0.3 3,-0.5 1,-0.1 -28,-0.3 -0.588 17.0 -87.3-129.0 157.3 27.1 15.6 18.8 52 52 A D T 3 S+ 0 0 116 -2,-0.2 -1,-0.1 1,-0.2 3,-0.1 -0.355 100.6 35.2 -59.2 140.2 27.1 15.5 15.0 53 53 A G T 3 S+ 0 0 64 1,-0.4 -1,-0.2 -2,-0.1 2,-0.0 -0.344 100.0 79.4 122.1 -47.1 24.2 14.1 13.1 54 54 A R < - 0 0 132 -3,-0.5 -31,-1.2 -2,-0.1 -1,-0.4 -0.102 67.0-121.4-100.9 175.9 21.3 15.2 15.2 55 55 A T B > -E 22 0B 27 -33,-0.2 4,-1.2 -32,-0.1 3,-0.5 -0.784 28.0-104.8-122.5 161.4 19.4 18.5 15.7 56 56 A L T 4>S+ 0 0 2 -35,-1.6 5,-1.9 -2,-0.2 3,-0.4 0.894 119.4 59.1 -55.0 -35.4 18.4 21.0 18.4 57 57 A S T >45S+ 0 0 70 -38,-1.7 3,-1.9 1,-0.2 -1,-0.2 0.846 100.2 55.2 -57.7 -46.2 14.9 19.4 18.4 58 58 A D T 345S+ 0 0 98 -3,-0.5 -1,-0.2 1,-0.3 -2,-0.2 0.850 108.5 48.2 -59.9 -37.4 16.3 16.0 19.4 59 59 A Y T 3<5S- 0 0 24 -4,-1.2 -1,-0.3 -3,-0.4 -2,-0.2 0.069 117.7-115.4 -90.1 15.1 17.9 17.6 22.4 60 60 A N T < 5 + 0 0 130 -3,-1.9 -3,-0.2 1,-0.2 -2,-0.1 0.412 50.6 176.3 71.5 10.9 14.6 19.4 23.3 61 61 A I < + 0 0 6 -5,-1.9 -1,-0.2 -6,-0.2 2,-0.2 -0.127 9.6 160.8 -52.6 134.5 16.2 22.9 22.7 62 62 A Q > - 0 0 121 1,-0.1 3,-2.3 -60,-0.0 2,-0.3 -0.726 39.3 -24.7-145.1-177.6 13.6 25.8 23.1 63 63 A K T 3 S- 0 0 180 1,-0.3 -60,-0.2 -2,-0.2 -1,-0.1 -0.207 127.7 -6.4 -51.8 104.8 12.9 29.4 23.7 64 64 A E T 3 S+ 0 0 125 -62,-2.6 -1,-0.3 -2,-0.3 2,-0.2 0.669 85.1 171.1 70.9 21.5 15.8 31.0 25.5 65 65 A S < - 0 0 18 -3,-2.3 -61,-2.1 -63,-0.4 2,-0.5 -0.459 26.0-142.0 -58.2 119.8 17.7 27.6 26.0 66 66 A T E -b 4 0A 65 -2,-0.2 2,-0.2 -63,-0.2 -61,-0.2 -0.845 22.0-175.3 -92.9 122.5 21.1 28.6 27.4 67 67 A L E -b 5 0A 3 -63,-1.4 -61,-2.7 -2,-0.5 2,-0.3 -0.703 16.0-130.0-113.8 171.0 24.0 26.5 26.1 68 68 A H E -bC 6 44A 73 -24,-2.3 -24,-2.6 -63,-0.2 2,-0.6 -0.914 9.7-145.4-136.2 144.3 27.7 26.4 27.0 69 69 A L E -bC 7 43A 6 -63,-1.8 -61,-1.0 -2,-0.3 2,-0.5 -0.920 7.8-167.0-127.1 103.2 30.8 26.6 24.8 70 70 A V E - C 0 42A 11 -28,-2.1 -28,-1.7 -2,-0.6 2,-0.7 -0.755 15.3-144.6 -87.5 128.6 34.1 24.7 25.5 71 71 A L E - C 0 41A 111 -2,-0.5 2,-2.2 -30,-0.2 -30,-0.2 -0.851 68.7 -39.2 -93.4 114.0 37.1 25.8 23.4 72 72 A R S S+ 0 0 186 -32,-3.5 2,-0.2 -2,-0.7 -1,-0.1 -0.267 111.7 95.8 80.4 -52.7 39.3 22.8 22.7 73 73 A L - 0 0 110 -2,-2.2 2,-0.4 -31,-0.1 -31,-0.2 -0.493 63.7-147.5 -72.4 138.5 39.2 20.9 26.1 74 74 A R S S+ 0 0 174 -2,-0.2 2,-0.5 2,-0.1 -3,-0.0 -0.958 78.0 29.8-110.6 134.3 36.7 18.1 26.2 75 75 A G 0 0 55 -2,-0.4 -5,-0.1 -5,-0.0 -2,-0.0 -0.988 360.0 360.0 111.0-122.6 35.3 17.8 29.7 76 76 A G 0 0 123 -2,-0.5 -2,-0.1 -6,-0.0 -6,-0.0 -0.786 360.0 360.0 113.0 360.0 35.3 21.2 31.6