==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PROTEIN TRANSPORT 19-MAY-08 2K3W . COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATING PROTEIN 4A; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR C.KIEFFER,J.J.SKALICKY,E.MORITA,I.DE DOMINI,D.M.WARD, . 85 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5442.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 63 74.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 57 67.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 1 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A T 0 0 138 0, 0.0 5,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 132.7 15.0 -11.5 -1.6 2 4 A S > - 0 0 79 1,-0.1 4,-2.2 4,-0.0 5,-0.2 -0.210 360.0-119.9 -61.0 153.0 15.9 -8.0 -0.3 3 5 A T H > S+ 0 0 33 1,-0.2 4,-2.1 2,-0.2 37,-0.1 0.915 115.2 47.3 -61.7 -43.9 13.5 -6.4 2.1 4 6 A L H > S+ 0 0 24 2,-0.2 4,-2.6 1,-0.2 5,-0.3 0.918 108.2 55.2 -64.5 -43.0 12.9 -3.5 -0.3 5 7 A Q H > S+ 0 0 106 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.919 109.2 48.0 -56.2 -43.6 12.4 -5.8 -3.3 6 8 A K H X S+ 0 0 72 -4,-2.2 4,-3.0 2,-0.2 5,-0.3 0.903 108.0 55.8 -63.1 -41.5 9.7 -7.6 -1.3 7 9 A A H X S+ 0 0 0 -4,-2.1 4,-2.4 1,-0.2 -2,-0.2 0.938 110.7 43.8 -56.8 -47.9 8.2 -4.2 -0.5 8 10 A I H X S+ 0 0 29 -4,-2.6 4,-3.0 1,-0.2 -1,-0.2 0.893 112.4 53.5 -63.8 -42.4 7.9 -3.3 -4.2 9 11 A D H X S+ 0 0 88 -4,-2.4 4,-2.1 -5,-0.3 5,-0.2 0.950 111.7 44.2 -58.9 -48.5 6.6 -6.8 -5.0 10 12 A L H X S+ 0 0 29 -4,-3.0 4,-2.2 1,-0.2 -2,-0.2 0.908 116.2 46.6 -64.0 -42.5 3.8 -6.6 -2.5 11 13 A V H X S+ 0 0 0 -4,-2.4 4,-2.3 -5,-0.3 -1,-0.2 0.890 108.1 56.8 -66.8 -40.1 2.9 -3.0 -3.5 12 14 A T H X S+ 0 0 62 -4,-3.0 4,-1.8 1,-0.2 3,-0.2 0.961 111.1 42.5 -56.6 -51.8 3.0 -3.9 -7.2 13 15 A K H X S+ 0 0 88 -4,-2.1 4,-2.6 1,-0.2 5,-0.2 0.918 108.5 61.1 -61.0 -41.6 0.5 -6.6 -6.7 14 16 A A H X S+ 0 0 0 -4,-2.2 4,-2.4 1,-0.2 -1,-0.2 0.906 104.4 48.8 -51.6 -43.9 -1.5 -4.3 -4.4 15 17 A T H X S+ 0 0 15 -4,-2.3 4,-2.0 1,-0.2 -1,-0.2 0.899 109.5 51.7 -64.9 -39.8 -1.9 -1.9 -7.3 16 18 A E H X S+ 0 0 101 -4,-1.8 4,-1.9 1,-0.2 -1,-0.2 0.888 110.7 48.7 -63.4 -38.9 -3.1 -4.7 -9.6 17 19 A E H <>S+ 0 0 32 -4,-2.6 5,-3.7 2,-0.2 -2,-0.2 0.903 107.0 55.4 -67.8 -40.6 -5.6 -5.8 -7.0 18 20 A D H ><5S+ 0 0 0 -4,-2.4 3,-1.3 -5,-0.2 -1,-0.2 0.905 109.2 47.6 -58.9 -41.3 -6.9 -2.2 -6.6 19 21 A K H 3<5S+ 0 0 127 -4,-2.0 -1,-0.2 1,-0.3 -2,-0.2 0.890 106.2 57.0 -66.3 -39.4 -7.5 -2.1 -10.4 20 22 A A T 3<5S- 0 0 62 -4,-1.9 -1,-0.3 -5,-0.2 -2,-0.2 0.360 124.1-108.7 -73.2 8.3 -9.3 -5.4 -10.2 21 23 A K T < 5S+ 0 0 108 -3,-1.3 2,-0.9 1,-0.2 3,-0.2 0.785 76.5 141.1 68.3 29.4 -11.5 -3.7 -7.7 22 24 A N >< + 0 0 68 -5,-3.7 4,-3.6 1,-0.2 5,-0.3 -0.576 11.8 159.2-102.1 69.4 -10.0 -5.8 -4.9 23 25 A Y H > S+ 0 0 52 -2,-0.9 4,-3.0 1,-0.2 -1,-0.2 0.888 75.1 51.8 -57.5 -40.0 -9.8 -3.1 -2.2 24 26 A E H > S+ 0 0 113 -3,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.969 116.2 37.2 -62.5 -54.2 -9.6 -5.9 0.4 25 27 A E H > S+ 0 0 74 1,-0.2 4,-2.3 2,-0.2 5,-0.2 0.932 118.8 50.6 -63.9 -45.1 -6.7 -7.7 -1.2 26 28 A A H X S+ 0 0 0 -4,-3.6 4,-2.8 1,-0.2 -1,-0.2 0.910 108.8 52.5 -58.9 -43.5 -5.1 -4.5 -2.3 27 29 A L H X S+ 0 0 9 -4,-3.0 4,-2.4 -5,-0.3 5,-0.2 0.919 108.3 49.7 -59.8 -45.7 -5.4 -3.1 1.3 28 30 A R H X S+ 0 0 107 -4,-2.1 4,-1.9 1,-0.2 -1,-0.2 0.919 114.2 45.2 -60.2 -43.6 -3.7 -6.1 2.8 29 31 A L H X S+ 0 0 12 -4,-2.3 4,-3.4 2,-0.2 5,-0.2 0.882 109.6 56.1 -67.3 -38.9 -0.9 -5.8 0.3 30 32 A Y H X S+ 0 0 0 -4,-2.8 4,-2.3 1,-0.2 -2,-0.2 0.936 109.1 45.4 -59.3 -47.8 -0.6 -2.1 0.8 31 33 A Q H X S+ 0 0 89 -4,-2.4 4,-1.9 2,-0.2 -1,-0.2 0.901 115.6 47.9 -63.4 -40.3 -0.1 -2.4 4.5 32 34 A H H X S+ 0 0 94 -4,-1.9 4,-2.1 -5,-0.2 5,-0.2 0.958 109.1 52.0 -65.4 -50.9 2.4 -5.2 4.0 33 35 A A H X S+ 0 0 0 -4,-3.4 4,-2.4 1,-0.2 -2,-0.2 0.925 109.5 50.6 -51.0 -49.3 4.4 -3.4 1.4 34 36 A V H X S+ 0 0 5 -4,-2.3 4,-2.8 1,-0.2 5,-0.3 0.904 106.0 56.4 -57.1 -43.3 4.7 -0.4 3.7 35 37 A E H X S+ 0 0 89 -4,-1.9 4,-2.1 1,-0.2 -1,-0.2 0.933 110.0 43.9 -54.9 -49.1 5.9 -2.6 6.5 36 38 A Y H X S+ 0 0 80 -4,-2.1 4,-1.9 2,-0.2 -1,-0.2 0.885 112.0 54.2 -64.5 -38.7 8.8 -3.9 4.3 37 39 A F H X S+ 0 0 1 -4,-2.4 4,-2.0 -5,-0.2 -2,-0.2 0.943 110.4 45.1 -60.9 -48.5 9.6 -0.4 3.1 38 40 A L H X S+ 0 0 57 -4,-2.8 4,-1.7 1,-0.2 5,-0.2 0.881 112.3 52.7 -63.4 -37.8 9.9 1.0 6.6 39 41 A H H X S+ 0 0 49 -4,-2.1 4,-3.1 -5,-0.3 5,-0.4 0.825 105.7 55.8 -67.6 -31.1 12.0 -2.1 7.6 40 42 A A H X S+ 0 0 0 -4,-1.9 4,-2.2 3,-0.2 -2,-0.2 0.954 108.7 44.2 -68.2 -47.1 14.3 -1.5 4.7 41 43 A I H < S+ 0 0 20 -4,-2.0 5,-0.2 2,-0.2 -1,-0.2 0.854 123.4 38.3 -66.2 -33.1 15.2 2.1 5.6 42 44 A K H < S+ 0 0 144 -4,-1.7 -2,-0.2 -5,-0.2 -3,-0.2 0.922 129.0 29.1 -82.3 -49.8 15.6 1.1 9.2 43 45 A Y H < S+ 0 0 158 -4,-3.1 2,-0.3 -5,-0.2 -3,-0.2 0.638 123.4 54.0 -86.3 -16.0 17.3 -2.3 8.9 44 46 A E S < S- 0 0 45 -4,-2.2 2,-0.3 -5,-0.4 0, 0.0 -0.900 81.6-124.8-120.7 149.6 18.9 -1.4 5.6 45 47 A A + 0 0 89 -2,-0.3 2,-0.3 6,-0.0 -3,-0.1 -0.737 37.3 156.2 -95.3 140.6 21.2 1.5 4.7 46 48 A H - 0 0 78 -2,-0.3 5,-0.1 -5,-0.2 -2,-0.0 -0.988 43.8 -84.5-159.2 155.5 20.4 3.9 1.8 47 49 A S > - 0 0 71 -2,-0.3 4,-2.3 1,-0.1 5,-0.1 -0.009 45.9-105.8 -57.0 167.0 21.2 7.4 0.7 48 50 A D H > S+ 0 0 127 1,-0.2 4,-2.9 2,-0.2 5,-0.3 0.963 121.7 53.2 -61.5 -52.2 19.0 10.3 1.9 49 51 A K H > S+ 0 0 150 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.854 108.8 53.6 -52.3 -33.9 17.2 10.7 -1.4 50 52 A A H > S+ 0 0 4 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.977 108.9 45.7 -65.2 -54.8 16.4 7.0 -1.0 51 53 A K H X S+ 0 0 33 -4,-2.3 4,-3.4 1,-0.3 5,-0.3 0.934 112.0 51.9 -53.8 -49.9 14.9 7.3 2.5 52 54 A E H X S+ 0 0 92 -4,-2.9 4,-2.6 1,-0.2 -1,-0.3 0.884 107.9 53.4 -55.0 -39.2 12.9 10.3 1.5 53 55 A S H X S+ 0 0 38 -4,-1.8 4,-2.6 -5,-0.3 5,-0.3 0.922 112.4 43.1 -62.2 -44.4 11.6 8.3 -1.5 54 56 A I H X S+ 0 0 3 -4,-2.2 4,-3.2 2,-0.2 -2,-0.2 0.926 114.8 49.0 -67.6 -45.1 10.5 5.5 0.8 55 57 A R H X S+ 0 0 156 -4,-3.4 4,-1.9 2,-0.2 -2,-0.2 0.872 114.3 47.1 -62.5 -36.7 9.0 7.8 3.4 56 58 A A H X S+ 0 0 41 -4,-2.6 4,-1.4 -5,-0.3 -2,-0.2 0.950 118.1 39.1 -70.3 -50.7 7.2 9.7 0.7 57 59 A K H X S+ 0 0 27 -4,-2.6 4,-3.1 -5,-0.2 5,-0.2 0.878 111.8 60.2 -66.8 -36.5 5.8 6.6 -1.0 58 60 A C H X S+ 0 0 5 -4,-3.2 4,-2.7 -5,-0.3 5,-0.2 0.947 105.9 45.6 -56.5 -50.8 5.2 5.0 2.3 59 61 A V H X S+ 0 0 88 -4,-1.9 4,-2.2 1,-0.2 -1,-0.2 0.818 113.2 53.0 -63.3 -29.0 2.8 7.7 3.4 60 62 A Q H X S+ 0 0 73 -4,-1.4 4,-2.0 2,-0.2 -2,-0.2 0.932 110.4 45.2 -71.1 -46.4 1.2 7.4 -0.1 61 63 A Y H X S+ 0 0 0 -4,-3.1 4,-2.3 2,-0.2 -2,-0.2 0.939 115.7 46.7 -62.8 -48.2 0.6 3.7 0.2 62 64 A L H X S+ 0 0 65 -4,-2.7 4,-3.0 -5,-0.2 -2,-0.2 0.951 108.2 55.2 -60.4 -49.8 -0.7 3.9 3.8 63 65 A D H X S+ 0 0 87 -4,-2.2 4,-2.4 1,-0.3 5,-0.3 0.915 109.8 47.7 -49.7 -45.8 -3.0 6.8 2.9 64 66 A R H X S+ 0 0 20 -4,-2.0 4,-2.4 1,-0.2 -1,-0.3 0.921 111.4 50.2 -61.2 -44.1 -4.5 4.7 0.2 65 67 A A H X S+ 0 0 2 -4,-2.3 4,-2.4 2,-0.2 -2,-0.2 0.874 109.4 53.6 -61.8 -36.8 -4.8 1.8 2.6 66 68 A E H X S+ 0 0 110 -4,-3.0 4,-1.7 2,-0.2 -2,-0.2 0.968 111.9 40.9 -63.3 -55.6 -6.5 4.1 5.1 67 69 A K H X S+ 0 0 65 -4,-2.4 4,-2.2 2,-0.2 5,-0.4 0.875 113.6 56.3 -61.3 -37.1 -9.2 5.4 2.8 68 70 A L H X S+ 0 0 0 -4,-2.4 4,-1.6 -5,-0.3 -1,-0.2 0.947 113.3 38.9 -60.1 -48.0 -9.7 1.9 1.4 69 71 A K H X S+ 0 0 104 -4,-2.4 4,-1.9 -5,-0.2 -1,-0.2 0.712 111.1 64.9 -72.6 -22.8 -10.4 0.5 4.8 70 72 A D H < S+ 0 0 123 -4,-1.7 -2,-0.2 2,-0.2 -1,-0.2 0.977 112.8 27.3 -66.8 -56.7 -12.4 3.7 5.7 71 73 A Y H < S+ 0 0 66 -4,-2.2 -2,-0.2 2,-0.2 -1,-0.2 0.811 117.9 61.8 -76.7 -29.3 -15.2 3.3 3.2 72 74 A L H < 0 0 68 -4,-1.6 -2,-0.2 -5,-0.4 -1,-0.2 0.944 360.0 360.0 -61.0 -47.0 -14.8 -0.5 3.2 73 75 A R < 0 0 247 -4,-1.9 -1,-0.2 -5,-0.1 -2,-0.2 0.925 360.0 360.0 -63.1 360.0 -15.6 -0.6 6.9 74 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 75 168 B I 0 0 107 0, 0.0 2,-0.5 0, 0.0 -22,-0.0 0.000 360.0 360.0 360.0 114.7 15.6 3.2 -6.7 76 169 B E - 0 0 178 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.940 360.0-178.6-126.0 109.6 12.4 3.0 -8.8 77 170 B L - 0 0 38 -2,-0.5 2,-0.1 1,-0.1 -69,-0.0 -0.665 24.0-114.4-104.0 161.3 9.1 2.7 -6.9 78 171 B P - 0 0 33 0, 0.0 2,-0.5 0, 0.0 -1,-0.1 -0.429 22.1-122.5 -89.3 166.6 5.6 2.4 -8.4 79 172 B E - 0 0 157 -2,-0.1 3,-0.1 -67,-0.0 -22,-0.0 -0.946 28.8-111.3-115.3 126.3 2.7 4.9 -8.1 80 173 B V - 0 0 20 -2,-0.5 2,-0.5 1,-0.1 -68,-0.0 -0.165 39.6-104.2 -51.3 143.1 -0.6 3.9 -6.6 81 174 B P - 0 0 20 0, 0.0 2,-1.8 0, 0.0 -1,-0.1 -0.594 24.1-138.9 -75.7 120.6 -3.5 3.7 -9.1 82 175 B S + 0 0 117 -2,-0.5 -2,-0.0 -3,-0.1 -3,-0.0 -0.582 36.0 173.6 -81.7 84.3 -5.8 6.7 -8.9 83 176 B E - 0 0 29 -2,-1.8 2,-0.8 1,-0.1 -64,-0.0 -0.428 43.4-111.7 -87.3 166.1 -9.1 4.9 -9.3 84 177 B P + 0 0 125 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.290 65.5 143.3 -92.2 49.3 -12.6 6.6 -8.9 85 178 B L 0 0 17 -2,-0.8 -17,-0.0 1,-0.2 -64,-0.0 -0.552 360.0 360.0 -88.5 156.4 -13.4 4.6 -5.7 86 179 B P 0 0 110 0, 0.0 -1,-0.2 0, 0.0 -15,-0.2 0.073 360.0 360.0 -33.9 360.0 -15.4 6.1 -2.8