==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 26-MAY-08 2K40 . COMPND 2 MOLECULE: HOMEOBOX EXPRESSED IN ES CELLS 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR J.ASENSIO,M.TORRADO,C.GONZALEZ,A.BASTIDA . 67 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5827.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 64.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 6.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 9.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 32 47.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 97 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 126.0 29.8 39.8 25.2 2 2 A R - 0 0 260 1,-0.1 0, 0.0 0, 0.0 0, 0.0 0.566 360.0-158.9 12.4 66.6 27.0 38.7 22.8 3 3 A R - 0 0 120 1,-0.1 3,-0.1 3,-0.0 -1,-0.1 -0.288 9.8-119.8 -71.7 146.8 28.6 35.4 21.6 4 4 A P - 0 0 103 0, 0.0 2,-0.9 0, 0.0 -1,-0.1 -0.101 58.2 -53.0 -71.6 179.1 27.7 33.7 18.3 5 5 A R S S- 0 0 163 1,-0.0 2,-0.2 46,-0.0 43,-0.0 -0.428 70.8-150.9 -56.9 97.4 26.2 30.2 17.9 6 6 A T - 0 0 28 -2,-0.9 2,-0.3 38,-0.2 -1,-0.0 -0.480 14.4-167.4 -75.2 145.1 28.8 28.3 19.9 7 7 A A - 0 0 74 -2,-0.2 2,-0.2 0, 0.0 3,-0.0 -0.890 5.3-175.9-130.4 164.4 29.8 24.7 19.2 8 8 A F - 0 0 48 -2,-0.3 2,-0.2 1,-0.1 0, 0.0 -0.627 43.8 -60.6-131.9-172.0 31.8 22.0 21.0 9 9 A T >> - 0 0 92 -2,-0.2 3,-2.2 1,-0.1 4,-1.9 -0.597 51.3-117.0 -65.9 145.8 33.1 18.4 20.6 10 10 A Q H 3> S+ 0 0 156 1,-0.3 4,-2.8 -2,-0.2 5,-0.2 0.771 115.8 69.9 -62.1 -19.7 30.1 15.9 20.2 11 11 A N H 34 S+ 0 0 114 2,-0.2 -1,-0.3 1,-0.2 4,-0.1 0.589 106.7 38.8 -68.8 -14.2 31.4 14.4 23.5 12 12 A Q H X> S+ 0 0 37 -3,-2.2 4,-1.5 2,-0.1 3,-0.5 0.742 113.6 54.3 -98.2 -43.1 30.1 17.7 25.1 13 13 A I H 3X S+ 0 0 31 -4,-1.9 4,-3.2 1,-0.2 -2,-0.2 0.911 101.6 60.0 -55.3 -46.5 27.0 17.9 22.9 14 14 A E H 3X S+ 0 0 96 -4,-2.8 4,-2.2 1,-0.2 -1,-0.2 0.783 102.8 50.2 -62.7 -27.3 25.8 14.4 23.9 15 15 A V H <> S+ 0 0 62 -3,-0.5 4,-1.5 2,-0.2 -1,-0.2 0.958 114.7 44.5 -68.9 -46.5 25.6 15.3 27.6 16 16 A L H X S+ 0 0 0 -4,-1.5 4,-3.0 2,-0.2 -2,-0.2 0.921 114.2 50.6 -63.3 -45.3 23.5 18.4 26.8 17 17 A E H X S+ 0 0 62 -4,-3.2 4,-1.8 2,-0.2 -1,-0.2 0.940 108.8 49.9 -48.6 -58.7 21.4 16.2 24.3 18 18 A N H < S+ 0 0 75 -4,-2.2 4,-0.5 1,-0.2 -1,-0.2 0.750 115.2 44.9 -68.1 -19.3 20.7 13.5 26.9 19 19 A V H >X S+ 0 0 34 -4,-1.5 4,-2.0 -3,-0.2 3,-1.4 0.916 105.9 60.2 -73.7 -51.4 19.6 16.3 29.4 20 20 A F H 3< S+ 0 0 24 -4,-3.0 -2,-0.2 1,-0.3 -3,-0.2 0.775 96.9 61.9 -53.8 -30.2 17.5 18.1 26.7 21 21 A R T 3< S+ 0 0 180 -4,-1.8 3,-0.3 1,-0.2 -1,-0.3 0.927 111.8 37.4 -50.2 -52.9 15.4 14.9 26.3 22 22 A V T <4 S+ 0 0 125 -3,-1.4 2,-0.4 -4,-0.5 -2,-0.2 0.900 134.6 18.9 -72.7 -49.5 14.3 15.2 30.0 23 23 A N < - 0 0 45 -4,-2.0 -1,-0.3 1,-0.1 -2,-0.1 -0.833 58.2-169.7-131.6 96.5 14.0 19.1 30.1 24 24 A C S S+ 0 0 45 -2,-0.4 29,-0.1 -3,-0.3 -4,-0.1 0.636 95.0 24.3 -61.6 -12.2 13.7 20.9 26.8 25 25 A Y S S- 0 0 113 -5,-0.0 -1,-0.3 -3,-0.0 25,-0.0 -0.733 87.6-164.1-146.8 103.9 14.2 24.1 28.9 26 26 A P - 0 0 19 0, 0.0 2,-0.2 0, 0.0 -6,-0.0 -0.141 16.6-112.1 -75.8 176.2 16.2 23.6 32.2 27 27 A G >> - 0 0 40 1,-0.0 4,-1.9 0, 0.0 3,-0.6 -0.497 38.6 -90.0-100.8 176.9 16.5 25.9 35.3 28 28 A I H 3> S+ 0 0 106 1,-0.2 4,-3.2 2,-0.2 5,-0.2 0.851 121.9 54.7 -62.5 -39.9 19.6 27.8 36.7 29 29 A D H 3> S+ 0 0 142 2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.828 109.7 47.8 -65.7 -32.9 20.8 25.0 39.0 30 30 A I H <> S+ 0 0 66 -3,-0.6 4,-2.4 2,-0.2 -1,-0.2 0.860 113.0 49.1 -71.7 -38.6 20.9 22.5 36.1 31 31 A L H X S+ 0 0 4 -4,-1.9 4,-2.6 2,-0.2 -2,-0.2 0.941 114.3 44.8 -64.3 -47.9 22.7 25.1 34.0 32 32 A E H X S+ 0 0 99 -4,-3.2 4,-2.9 2,-0.2 5,-0.2 0.866 111.8 53.5 -60.5 -41.4 25.2 25.7 36.9 33 33 A D H X S+ 0 0 69 -4,-2.1 4,-1.8 -5,-0.2 -2,-0.2 0.968 113.4 42.3 -56.6 -50.4 25.5 21.9 37.4 34 34 A L H X S+ 0 0 5 -4,-2.4 4,-2.9 2,-0.2 5,-0.3 0.905 114.1 53.3 -61.5 -42.2 26.4 21.5 33.6 35 35 A A H X>S+ 0 0 11 -4,-2.6 5,-1.4 1,-0.2 4,-1.0 0.949 111.3 43.9 -56.9 -53.5 28.7 24.6 33.9 36 36 A Q H <5S+ 0 0 147 -4,-2.9 -1,-0.2 3,-0.2 -2,-0.2 0.800 122.5 39.9 -65.2 -29.9 30.7 23.2 36.9 37 37 A K H <5S+ 0 0 144 -4,-1.8 -2,-0.2 -5,-0.2 -3,-0.2 0.945 120.1 37.6 -81.7 -56.5 30.9 19.7 35.2 38 38 A L H <5S- 0 0 26 -4,-2.9 -3,-0.2 -5,-0.2 -2,-0.1 0.532 106.3-116.8 -74.1 -10.1 31.5 20.3 31.4 39 39 A N T <5S+ 0 0 144 -4,-1.0 2,-0.3 -5,-0.3 -3,-0.2 0.987 72.4 127.5 48.4 70.3 33.8 23.3 32.1 40 40 A L < - 0 0 19 -5,-1.4 2,-0.3 -6,-0.2 -1,-0.2 -0.944 61.1-113.4-135.2 158.5 31.5 25.8 30.3 41 41 A E >> - 0 0 70 -2,-0.3 4,-1.6 1,-0.1 3,-0.6 -0.736 29.9-115.6 -88.0 145.7 30.0 29.2 31.4 42 42 A L H 3> S+ 0 0 60 -2,-0.3 4,-2.9 1,-0.2 5,-0.2 0.853 115.3 60.3 -48.5 -41.3 26.2 29.4 32.0 43 43 A D H 3> S+ 0 0 73 1,-0.2 4,-2.9 2,-0.2 -1,-0.2 0.915 103.7 48.9 -54.2 -49.2 26.0 31.9 29.0 44 44 A R H <> S+ 0 0 74 -3,-0.6 4,-1.9 2,-0.2 -1,-0.2 0.884 114.2 45.9 -59.9 -40.5 27.4 29.3 26.5 45 45 A I H X S+ 0 0 0 -4,-1.6 4,-3.1 2,-0.2 -2,-0.2 0.885 111.1 52.3 -74.9 -34.1 24.9 26.6 27.8 46 46 A Q H X S+ 0 0 43 -4,-2.9 4,-2.9 2,-0.2 5,-0.3 0.968 110.9 47.4 -57.4 -52.5 22.0 29.2 27.6 47 47 A I H X S+ 0 0 38 -4,-2.9 4,-2.3 2,-0.2 -2,-0.2 0.881 113.6 50.2 -57.8 -37.9 23.0 30.0 24.0 48 48 A W H X S+ 0 0 13 -4,-1.9 4,-2.4 -5,-0.2 -2,-0.2 0.988 113.1 43.0 -61.3 -58.7 23.2 26.1 23.4 49 49 A F H X S+ 0 0 0 -4,-3.1 4,-2.3 1,-0.2 -2,-0.2 0.887 117.2 47.2 -57.9 -42.1 19.7 25.4 24.9 50 50 A Q H X S+ 0 0 105 -4,-2.9 4,-2.8 2,-0.2 -1,-0.2 0.917 110.8 50.0 -70.5 -38.8 18.1 28.4 23.1 51 51 A N H X S+ 0 0 54 -4,-2.3 4,-2.7 -5,-0.3 -2,-0.2 0.892 110.3 54.9 -62.7 -32.8 19.7 27.6 19.7 52 52 A R H X S+ 0 0 39 -4,-2.4 4,-2.6 2,-0.2 -2,-0.2 0.968 111.2 41.2 -57.4 -58.8 18.3 24.0 20.4 53 53 A R H X S+ 0 0 115 -4,-2.3 4,-2.4 2,-0.2 5,-0.2 0.957 115.0 52.2 -56.3 -50.1 14.7 25.3 20.9 54 54 A A H X S+ 0 0 39 -4,-2.8 4,-2.3 2,-0.2 -2,-0.2 0.901 111.6 46.7 -52.1 -47.6 15.1 27.7 17.9 55 55 A K H < S+ 0 0 141 -4,-2.7 -1,-0.2 1,-0.2 -2,-0.2 0.942 112.0 50.2 -60.5 -48.5 16.3 24.8 15.6 56 56 A L H < S+ 0 0 124 -4,-2.6 -2,-0.2 1,-0.2 -1,-0.2 0.834 111.4 48.6 -59.3 -37.1 13.4 22.5 16.8 57 57 A K H < S+ 0 0 84 -4,-2.4 2,-2.1 -5,-0.2 -1,-0.2 0.920 81.8 179.2 -67.4 -44.0 10.9 25.3 16.0 58 58 A R < + 0 0 224 -4,-2.3 2,-0.3 -5,-0.2 -1,-0.1 -0.241 62.5 29.7 71.8 -41.4 12.5 25.9 12.6 59 59 A S S S+ 0 0 64 -2,-2.1 0, 0.0 -3,-0.1 0, 0.0 -0.933 105.4 17.8-136.1 163.0 10.0 28.7 11.6 60 60 A H - 0 0 152 -2,-0.3 2,-0.3 1,-0.1 5,-0.1 0.180 58.7-136.6 64.8 173.0 8.1 31.3 13.6 61 61 A R > - 0 0 168 3,-0.2 3,-1.3 1,-0.1 -1,-0.1 -0.934 19.7-115.6-158.3 150.2 8.6 32.7 17.3 62 62 A E T 3 S+ 0 0 155 1,-0.3 2,-0.5 -2,-0.3 -1,-0.1 0.934 115.2 40.3 -50.7 -67.0 6.3 33.5 20.3 63 63 A S T 3 S+ 0 0 131 2,-0.0 2,-0.3 0, 0.0 -1,-0.3 0.017 114.0 78.1 -73.5 25.7 6.9 37.3 20.5 64 64 A Q < + 0 0 84 -3,-1.3 -3,-0.2 -2,-0.5 0, 0.0 -0.939 28.2 139.5-140.9 155.5 6.8 37.5 16.6 65 65 A F + 0 0 166 -2,-0.3 2,-2.4 -5,-0.1 -1,-0.1 0.191 14.7 178.1-153.4 -54.4 4.4 37.4 13.7 66 66 A L 0 0 152 0, 0.0 -2,-0.0 0, 0.0 0, 0.0 -0.380 360.0 360.0 58.7 -49.1 5.7 40.0 11.0 67 67 A M 0 0 234 -2,-2.4 -2,-0.0 0, 0.0 0, 0.0 -0.346 360.0 360.0 55.2 360.0 2.7 38.9 8.7