==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 03-JUN-08 2K4B . COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR; . SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS SUBSP. LACTIS; . AUTHOR F.CANTINI,L.BANCI,D.MAGNANI,M.SOLIOZ . 69 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5839.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 62.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 9 13.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 13.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 21 30.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 31 A F 0 0 275 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 140.6 -10.6 14.7 -18.3 2 32 A N - 0 0 155 2,-0.0 2,-0.2 0, 0.0 0, 0.0 -0.921 360.0-147.8-154.5 176.5 -9.4 11.2 -17.4 3 33 A V - 0 0 124 -2,-0.3 0, 0.0 2,-0.1 0, 0.0 -0.765 17.0-134.1-142.1 178.2 -6.6 9.5 -15.1 4 34 A S + 0 0 87 -2,-0.2 2,-0.3 0, 0.0 -2,-0.0 -0.102 67.7 99.6-139.0 35.6 -4.3 6.4 -15.0 5 35 A N - 0 0 78 1,-0.1 3,-0.1 42,-0.0 -2,-0.1 -0.811 65.9-131.3-122.7 159.2 -4.7 5.1 -11.3 6 36 A A S S- 0 0 65 1,-0.3 2,-0.3 -2,-0.3 -1,-0.1 0.917 74.8 -37.1 -74.6 -53.4 -6.7 2.3 -9.6 7 37 A E - 0 0 81 36,-0.1 -1,-0.3 1,-0.0 4,-0.3 -0.927 43.3-121.2-172.9 151.6 -8.4 4.1 -6.6 8 38 A L S >> S+ 0 0 113 -2,-0.3 4,-2.6 1,-0.1 3,-1.4 0.725 89.9 94.2 -74.8 -24.6 -7.5 6.8 -4.0 9 39 A I H 3> S+ 0 0 35 1,-0.3 4,-1.2 2,-0.2 -1,-0.1 0.816 87.4 40.5 -38.9 -58.5 -8.1 4.4 -1.1 10 40 A V H 3> S+ 0 0 4 1,-0.2 4,-1.1 -3,-0.2 -1,-0.3 0.718 117.8 48.3 -70.7 -23.7 -4.4 3.2 -0.7 11 41 A M H <> S+ 0 0 82 -3,-1.4 4,-1.5 -4,-0.3 -2,-0.2 0.865 105.0 58.8 -83.8 -37.2 -2.9 6.7 -1.2 12 42 A R H < S+ 0 0 171 -4,-2.6 4,-0.3 1,-0.2 -2,-0.2 0.797 113.0 38.8 -59.9 -34.9 -5.3 8.5 1.3 13 43 A V H >X S+ 0 0 41 -4,-1.2 3,-1.1 -5,-0.2 4,-1.0 0.950 114.1 47.1 -82.1 -54.1 -4.1 6.2 4.2 14 44 A I H 3X S+ 0 0 2 -4,-1.1 4,-1.6 1,-0.3 3,-0.2 0.833 100.6 66.1 -64.9 -36.8 -0.3 5.8 3.7 15 45 A W H 3< S+ 0 0 185 -4,-1.5 -1,-0.3 1,-0.2 -2,-0.1 0.799 106.2 43.3 -51.4 -36.2 0.4 9.5 3.1 16 46 A S H <4 S+ 0 0 104 -3,-1.1 -1,-0.2 -4,-0.3 -2,-0.2 0.858 110.8 51.6 -79.9 -41.9 -0.6 10.4 6.7 17 47 A L H < S- 0 0 85 -4,-1.0 2,-0.6 -3,-0.2 -2,-0.2 0.774 94.7-136.2 -73.0 -37.2 1.1 7.6 8.6 18 48 A G S < S+ 0 0 22 -4,-1.6 2,-0.4 2,-0.0 -1,-0.1 -0.773 76.2 19.7 115.0 -76.0 4.6 8.0 7.2 19 49 A E - 0 0 103 -2,-0.6 2,-0.4 46,-0.1 46,-0.2 -0.974 68.7-169.0-131.4 118.1 5.9 4.4 6.4 20 50 A A E -A 64 0A 0 44,-2.4 44,-3.3 -2,-0.4 2,-0.1 -0.903 12.2-141.6-116.1 128.9 3.5 1.5 6.0 21 51 A R E >> -A 63 0A 101 -2,-0.4 4,-2.8 42,-0.3 3,-0.5 -0.312 34.5 -98.7 -81.3 167.3 4.5 -2.2 5.8 22 52 A V H 3> S+ 0 0 21 40,-1.5 4,-1.1 1,-0.3 41,-0.1 0.832 127.3 44.7 -58.2 -39.7 2.8 -4.7 3.5 23 53 A D H 3> S+ 0 0 74 39,-0.2 4,-1.2 2,-0.2 -1,-0.3 0.757 114.7 51.9 -72.5 -25.3 0.6 -6.1 6.3 24 54 A E H <> S+ 0 0 66 -3,-0.5 4,-1.0 2,-0.2 -2,-0.2 0.956 106.9 48.9 -76.3 -55.3 -0.1 -2.5 7.4 25 55 A I H < S+ 0 0 4 -4,-2.8 3,-0.4 1,-0.2 -2,-0.2 0.861 115.7 46.7 -54.8 -40.3 -1.2 -1.1 4.0 26 56 A Y H >< S+ 0 0 100 -4,-1.1 3,-1.9 -5,-0.3 -1,-0.2 0.859 101.8 64.8 -67.7 -39.2 -3.6 -4.1 3.6 27 57 A A H 3< S+ 0 0 74 -4,-1.2 -2,-0.2 1,-0.3 -1,-0.2 0.732 94.9 60.3 -58.4 -23.3 -4.9 -3.6 7.2 28 58 A Q T 3< S+ 0 0 58 -4,-1.0 -1,-0.3 -3,-0.4 -2,-0.1 0.427 84.3 94.8 -82.7 -0.3 -6.4 -0.2 6.2 29 59 A I < - 0 0 25 -3,-1.9 -1,-0.1 2,-0.0 11,-0.0 -0.822 63.6-157.4-103.7 97.6 -8.7 -1.9 3.5 30 60 A P > - 0 0 73 0, 0.0 3,-1.8 0, 0.0 5,-0.4 -0.250 30.4-105.4 -80.0 164.6 -12.3 -2.7 4.8 31 61 A Q G > S+ 0 0 186 1,-0.3 3,-0.9 2,-0.2 -2,-0.0 0.696 107.6 80.8 -60.2 -20.9 -14.9 -5.3 3.6 32 62 A E G 3 S+ 0 0 187 1,-0.2 -1,-0.3 2,-0.1 -3,-0.0 0.734 95.3 49.0 -53.9 -24.5 -17.1 -2.4 2.0 33 63 A L G < S- 0 0 40 -3,-1.8 -1,-0.2 2,-0.1 -2,-0.2 0.740 96.6-140.8 -88.6 -29.3 -14.6 -2.7 -1.0 34 64 A E < + 0 0 180 -3,-0.9 -3,-0.1 -4,-0.4 -2,-0.1 0.492 51.9 144.5 72.2 9.0 -14.7 -6.6 -1.4 35 65 A W - 0 0 83 -5,-0.4 2,-0.2 1,-0.1 -1,-0.2 -0.201 36.9-146.5 -71.6 167.1 -10.9 -6.5 -2.1 36 66 A S >> - 0 0 72 1,-0.1 4,-1.4 -2,-0.0 3,-0.6 -0.810 32.6 -98.3-127.5 168.0 -8.3 -9.2 -1.1 37 67 A L H 3> S+ 0 0 55 -2,-0.2 4,-2.0 1,-0.2 3,-0.2 0.922 122.7 58.0 -51.1 -48.4 -4.5 -9.1 -0.1 38 68 A A H 3> S+ 0 0 71 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.859 102.3 57.2 -53.3 -37.7 -3.5 -10.0 -3.7 39 69 A T H <> S+ 0 0 51 -3,-0.6 4,-1.8 2,-0.2 -1,-0.2 0.931 107.1 43.8 -59.4 -55.4 -5.4 -6.9 -4.9 40 70 A V H X S+ 0 0 1 -4,-1.4 4,-2.7 -3,-0.2 3,-0.3 0.954 111.8 55.5 -61.6 -42.5 -3.5 -4.3 -2.8 41 71 A K H X S+ 0 0 100 -4,-2.0 4,-1.5 1,-0.2 -2,-0.2 0.906 111.0 43.6 -53.3 -48.1 -0.1 -6.1 -3.7 42 72 A T H X S+ 0 0 74 -4,-2.2 4,-0.6 2,-0.2 -1,-0.2 0.803 113.0 53.0 -67.6 -29.2 -0.8 -5.7 -7.5 43 73 A L H >X S+ 0 0 8 -4,-1.8 4,-2.1 -3,-0.3 3,-1.2 0.922 104.2 55.4 -73.3 -43.1 -2.0 -2.1 -7.0 44 74 A L H 3X S+ 0 0 3 -4,-2.7 4,-2.9 1,-0.3 5,-0.3 0.941 100.2 60.1 -51.4 -49.6 1.2 -1.1 -5.1 45 75 A G H 3X S+ 0 0 38 -4,-1.5 4,-0.9 1,-0.2 -1,-0.3 0.741 106.2 47.8 -53.3 -27.4 3.2 -2.3 -8.1 46 76 A R H S+ 0 0 14 -4,-2.1 5,-1.8 1,-0.2 6,-0.8 0.907 112.3 48.6 -55.2 -48.9 1.9 3.2 -7.7 48 78 A V H <5S+ 0 0 48 -4,-2.9 3,-0.5 1,-0.2 -1,-0.2 0.773 113.9 45.7 -70.5 -28.9 5.7 2.4 -7.4 49 79 A K H <5S+ 0 0 168 -4,-0.9 -1,-0.2 -5,-0.3 -2,-0.2 0.598 108.4 59.9 -78.9 -18.8 6.2 2.2 -11.2 50 80 A K T <5S- 0 0 80 -4,-1.1 -1,-0.2 -3,-0.5 -2,-0.2 -0.041 113.4-110.2-104.9 23.4 4.1 5.5 -11.7 51 81 A E T 5S+ 0 0 188 -3,-0.5 -3,-0.2 2,-0.2 -4,-0.1 0.613 91.1 107.8 61.6 17.4 6.4 7.8 -9.5 52 82 A M S +B 61 0A 117 3,-1.4 3,-1.7 -2,-0.9 -2,-0.0 -0.974 52.3 23.1-147.8 153.5 12.6 -3.7 6.2 59 89 A G T 3 S- 0 0 42 -2,-0.3 3,-0.1 1,-0.3 -1,-0.1 0.876 126.1 -67.6 58.9 37.2 11.2 -5.6 9.3 60 90 A R T 3 S+ 0 0 229 1,-0.2 -1,-0.3 -3,-0.1 2,-0.2 0.547 130.1 72.2 53.0 16.0 11.6 -9.0 7.3 61 91 A K E < S- B 0 58A 100 -3,-1.7 -3,-1.4 -5,-0.0 2,-0.4 -0.530 96.8 -81.9-133.4-178.6 8.8 -7.4 5.1 62 92 A F E - B 0 57A 96 -5,-0.2 -40,-1.5 -2,-0.2 2,-0.5 -0.863 30.3-150.9 -93.6 146.3 8.4 -4.5 2.6 63 93 A V E -AB 21 56A 11 -7,-3.0 -7,-2.7 -2,-0.4 2,-0.5 -0.987 10.8-158.2-112.1 120.2 8.0 -0.9 3.9 64 94 A Y E +AB 20 55A 28 -44,-3.3 -44,-2.4 -2,-0.5 -9,-0.2 -0.893 26.5 156.0-103.2 121.0 6.0 1.2 1.4 65 95 A R E - B 0 54A 95 -11,-2.6 -11,-2.8 -2,-0.5 -46,-0.1 -0.990 42.3-109.2-145.1 153.2 6.6 5.0 1.7 66 96 A P - 0 0 27 0, 0.0 2,-0.3 0, 0.0 -13,-0.1 -0.418 34.1-141.7 -72.4 162.4 6.5 8.3 -0.1 67 97 A L + 0 0 93 -15,-0.3 2,-0.3 -2,-0.1 0, 0.0 -0.968 23.1 167.8-130.5 142.9 9.8 10.1 -1.0 68 98 A M 0 0 148 -2,-0.3 0, 0.0 0, 0.0 0, 0.0 -0.941 360.0 360.0-146.7 160.5 10.8 13.8 -0.9 69 99 A E 0 0 246 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.634 360.0 360.0 -75.5 360.0 14.0 15.9 -1.2