==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-MAY-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RIBOSOMAL PROTEIN 20-JUN-08 2K4X . COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S27AE; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOPLASMA ACIDOPHILUM; . AUTHOR B.WU,A.YEE,C.FARES,A.LEMAK,A.SEMEST,C.ARROWSMITH,G.T.MONTELI . 55 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5767.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 29 52.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 6 10.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 18 32.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 5.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 205 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -64.3 2.9 -0.1 -1.9 2 2 A Q - 0 0 138 1,-0.1 2,-0.5 2,-0.0 0, 0.0 0.875 360.0-144.9 67.2 105.2 3.2 3.7 -1.4 3 3 A K - 0 0 162 2,-0.1 2,-1.0 0, 0.0 -1,-0.1 -0.892 2.4-150.2-101.7 125.9 3.1 5.7 -4.6 4 4 A R + 0 0 195 -2,-0.5 2,-0.5 1,-0.1 -2,-0.0 -0.784 32.0 156.0 -98.8 92.4 5.2 8.9 -4.6 5 5 A E + 0 0 132 -2,-1.0 2,-1.2 2,-0.1 -1,-0.1 -0.705 4.1 162.1-121.8 76.1 3.4 11.3 -6.9 6 6 A L + 0 0 166 -2,-0.5 2,-0.4 49,-0.0 -2,-0.0 -0.741 18.9 175.0 -93.5 83.7 4.4 14.8 -6.0 7 7 A Y - 0 0 156 -2,-1.2 -2,-0.1 1,-0.1 47,-0.0 -0.797 19.8-138.3 -98.8 134.0 3.3 16.6 -9.2 8 8 A E - 0 0 160 -2,-0.4 2,-0.3 47,-0.1 -1,-0.1 -0.120 12.3-135.8 -80.5 178.6 3.5 20.4 -9.5 9 9 A I - 0 0 71 2,-0.1 2,-0.6 44,-0.0 -1,-0.0 -0.982 8.4-145.6-139.3 149.3 1.0 22.8 -11.0 10 10 A A + 0 0 111 -2,-0.3 2,-0.4 45,-0.1 -2,-0.0 -0.848 33.6 172.2-114.5 90.1 1.1 25.8 -13.3 11 11 A D - 0 0 134 -2,-0.6 2,-1.0 1,-0.0 -2,-0.1 -0.849 39.9-115.1-105.9 133.7 -1.7 28.1 -12.1 12 12 A G - 0 0 53 -2,-0.4 2,-1.5 1,-0.1 -2,-0.0 -0.552 31.1-135.4 -66.6 101.2 -2.4 31.6 -13.3 13 13 A K - 0 0 185 -2,-1.0 2,-1.0 1,-0.1 -1,-0.1 -0.420 29.1-178.4 -63.8 88.3 -1.7 33.6 -10.2 14 14 A L + 0 0 166 -2,-1.5 2,-0.4 2,-0.1 -1,-0.1 -0.802 17.9 148.3 -95.3 96.2 -4.7 36.0 -10.4 15 15 A V - 0 0 83 -2,-1.0 2,-1.6 2,-0.0 -2,-0.0 -0.890 38.1-149.6-132.1 100.4 -4.4 38.3 -7.4 16 16 A R - 0 0 240 -2,-0.4 -2,-0.1 2,-0.0 0, 0.0 -0.548 25.7-151.4 -72.7 88.7 -5.8 41.8 -7.9 17 17 A K S S+ 0 0 137 -2,-1.6 3,-0.1 1,-0.2 -1,-0.0 -0.093 72.6 48.7 -59.4 162.3 -3.5 43.7 -5.6 18 18 A H S S- 0 0 125 1,-0.2 2,-0.8 12,-0.1 -1,-0.2 0.955 76.1-168.3 65.1 52.3 -4.6 46.9 -3.9 19 19 A R - 0 0 106 11,-0.1 -1,-0.2 10,-0.1 11,-0.1 -0.657 9.4-151.9 -76.8 108.7 -7.9 45.3 -2.8 20 20 A F - 0 0 104 -2,-0.8 9,-0.1 -3,-0.1 5,-0.1 -0.125 25.9 -90.2 -76.4 173.4 -10.1 48.2 -1.5 21 21 A C > - 0 0 3 7,-0.8 4,-2.6 1,-0.1 3,-0.3 -0.812 42.8-126.1 -87.9 118.5 -12.8 48.2 1.1 22 22 A P T 4 S+ 0 0 87 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.735 100.9 21.9 -37.4 -58.4 -16.0 47.4 -0.9 23 23 A R T 4 S+ 0 0 233 1,-0.2 -2,-0.0 2,-0.1 -3,-0.0 0.799 131.1 42.9 -86.4 -29.9 -18.2 50.3 0.2 24 24 A C T > S+ 0 0 23 -3,-0.3 4,-2.2 1,-0.2 -1,-0.2 0.522 83.6 110.0 -89.5 -6.3 -15.4 52.7 1.3 25 25 A G T >< + 0 0 8 -4,-2.6 2,-1.4 2,-0.2 3,-0.7 0.837 65.5 60.7 -40.8 -65.9 -13.3 51.9 -1.7 26 26 A P T 34 S+ 0 0 131 0, 0.0 -1,-0.2 0, 0.0 3,-0.0 -0.508 128.4 6.2 -65.8 90.8 -13.6 55.3 -3.6 27 27 A G T 34 S+ 0 0 78 -2,-1.4 2,-0.4 0, 0.0 -2,-0.2 0.033 126.8 62.3 124.6 -24.8 -12.0 57.5 -0.9 28 28 A V << - 0 0 28 -4,-2.2 -7,-0.8 -3,-0.7 -4,-0.1 -0.853 67.9-157.9-136.2 99.0 -10.8 54.9 1.6 29 29 A F - 0 0 141 -2,-0.4 2,-0.8 -9,-0.1 -9,-0.1 -0.240 31.2-105.2 -64.2 160.8 -8.2 52.4 0.5 30 30 A L - 0 0 7 9,-0.1 2,-0.8 -11,-0.1 9,-0.2 -0.849 38.4-114.8 -93.4 111.4 -7.9 49.2 2.4 31 31 A A E -A 38 0A 24 7,-2.3 2,-0.8 -2,-0.8 7,-0.6 -0.236 33.9-155.1 -52.3 92.3 -4.7 49.5 4.6 32 32 A E E +A 37 0A 64 -2,-0.8 2,-0.3 5,-0.2 5,-0.2 -0.652 17.5 178.4 -78.2 107.2 -2.6 46.8 2.9 33 33 A H - 0 0 94 3,-3.4 3,-0.2 -2,-0.8 15,-0.0 -0.737 44.2-104.9-102.9 161.0 -0.0 45.5 5.4 34 34 A A S S+ 0 0 109 -2,-0.3 3,-0.1 1,-0.2 -1,-0.1 0.760 121.7 28.7 -56.3 -27.2 2.5 42.8 4.8 35 35 A D S S- 0 0 81 1,-0.1 13,-2.0 12,-0.0 2,-0.3 0.595 131.5 -22.0-110.4 -15.9 0.4 40.4 6.9 36 36 A R E - B 0 47A 100 11,-0.3 -3,-3.4 -3,-0.2 2,-0.3 -0.907 59.4-100.3-171.0-169.7 -3.1 41.7 6.5 37 37 A Y E -AB 32 46A 28 9,-3.3 9,-1.0 -2,-0.3 2,-0.3 -0.898 27.0-178.9-131.2 160.3 -5.5 44.6 5.7 38 38 A S E -A 31 0A 37 -7,-0.6 -7,-2.3 -2,-0.3 2,-0.4 -0.982 19.5-142.8-157.3 162.3 -7.5 47.1 7.8 39 39 A C >> - 0 0 1 -2,-0.3 2,-2.4 5,-0.3 4,-2.1 -0.790 4.2-159.7-134.7 91.0 -10.0 50.0 7.3 40 40 A G T 34 S+ 0 0 82 -2,-0.4 5,-0.0 1,-0.2 -2,-0.0 -0.470 87.8 51.1 -66.0 78.6 -9.7 52.9 9.7 41 41 A R T 34 S+ 0 0 198 -2,-2.4 -1,-0.2 -13,-0.0 -13,-0.0 0.047 124.9 12.7-176.9 -51.3 -13.3 54.0 8.9 42 42 A C T <4 S- 0 0 71 -3,-1.0 -2,-0.2 2,-0.1 3,-0.1 0.270 99.7-111.3-127.3 4.8 -15.7 51.1 9.3 43 43 A G < + 0 0 56 -4,-2.1 2,-0.6 1,-0.2 -3,-0.1 0.615 57.0 163.3 77.2 12.4 -13.3 48.7 11.1 44 44 A Y + 0 0 75 -5,-0.5 2,-0.4 -6,-0.1 -5,-0.3 -0.546 9.8 173.2 -69.9 111.3 -13.2 46.3 8.1 45 45 A T + 0 0 69 -2,-0.6 2,-0.3 -7,-0.2 -7,-0.2 -0.979 6.9 172.9-124.5 135.9 -10.1 44.1 8.7 46 46 A E E -B 37 0A 45 -9,-1.0 -9,-3.3 -2,-0.4 2,-0.2 -0.986 24.7-123.9-141.8 147.2 -9.1 41.1 6.6 47 47 A F E -B 36 0A 126 -2,-0.3 2,-1.6 -11,-0.3 -11,-0.3 -0.601 30.9-102.2 -96.0 153.0 -6.0 38.9 6.7 48 48 A K - 0 0 74 -13,-2.0 2,-0.3 -2,-0.2 -1,-0.1 -0.600 49.4-138.2 -67.1 90.4 -3.5 38.1 3.9 49 49 A K - 0 0 138 -2,-1.6 2,-0.2 1,-0.1 -1,-0.1 -0.402 11.9-122.1 -62.3 118.1 -5.0 34.7 3.3 50 50 A A - 0 0 84 -2,-0.3 2,-1.3 1,-0.1 -1,-0.1 -0.457 22.6-126.4 -61.8 124.0 -2.2 32.1 2.7 51 51 A K - 0 0 153 -2,-0.2 2,-2.1 1,-0.1 -1,-0.1 -0.620 19.3-154.0 -79.3 95.2 -2.8 30.5 -0.7 52 52 A K + 0 0 207 -2,-1.3 2,-0.3 2,-0.0 -1,-0.1 -0.512 28.8 165.4 -74.1 80.6 -2.8 26.8 0.1 53 53 A S - 0 0 70 -2,-2.1 -2,-0.0 2,-0.3 -44,-0.0 -0.768 47.5-128.4 -95.3 145.5 -1.7 25.5 -3.2 54 54 A K 0 0 118 -2,-0.3 -1,-0.1 -46,-0.0 -2,-0.0 0.758 360.0 360.0 -61.9 -24.2 -0.5 21.9 -3.6 55 55 A S 0 0 95 -47,-0.1 -2,-0.3 -49,-0.0 -47,-0.1 0.024 360.0 360.0-147.3 360.0 2.6 23.5 -5.2