==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 27-JUN-08 2K5H . COMPND 2 MOLECULE: CONSERVED PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER . AUTHOR Y.WU,K.SINGARAPU,A.SEMESI,D.SUKUMARAN,A.YEE,M.GARCIA, . 101 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9647.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 53 52.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 23.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 3.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 18 17.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 251 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 165.7 2.5 41.0 40.3 2 2 A G - 0 0 64 1,-0.0 0, 0.0 0, 0.0 0, 0.0 -0.744 360.0-172.2 142.5 -90.6 -0.9 42.2 39.5 3 3 A S - 0 0 128 -2,-0.3 2,-0.3 1,-0.1 -1,-0.0 0.748 3.6-166.4 70.0 123.8 -3.7 39.6 40.2 4 4 A S - 0 0 96 1,-0.0 -1,-0.1 2,-0.0 0, 0.0 -0.953 17.1-171.2-144.0 122.8 -7.3 40.1 39.2 5 5 A H + 0 0 176 -2,-0.3 2,-0.8 2,-0.0 -1,-0.0 0.227 48.1 127.5 -94.7 13.8 -10.2 38.0 40.4 6 6 A H + 0 0 153 1,-0.0 2,-0.6 2,-0.0 3,-0.2 -0.613 34.8 177.5 -76.1 108.4 -12.6 39.6 37.9 7 7 A H + 0 0 158 -2,-0.8 -2,-0.0 1,-0.1 -1,-0.0 -0.891 32.5 123.2-120.7 100.5 -14.2 36.7 36.1 8 8 A H + 0 0 173 -2,-0.6 2,-0.2 2,-0.1 -1,-0.1 0.427 59.8 85.2-123.1 -15.0 -16.8 37.4 33.4 9 9 A H S S- 0 0 173 -3,-0.2 2,-0.3 1,-0.0 0, 0.0 -0.569 75.3-128.1 -85.4 153.3 -15.1 35.6 30.6 10 10 A H - 0 0 159 -2,-0.2 -2,-0.1 1,-0.1 2,-0.1 -0.688 19.9-114.7-102.6 155.6 -15.6 31.9 30.0 11 11 A S S S+ 0 0 103 -2,-0.3 -1,-0.1 2,-0.0 0, 0.0 -0.269 74.6 36.7 -82.7 173.0 -12.8 29.3 29.6 12 12 A S + 0 0 103 1,-0.1 3,-0.1 2,-0.1 -2,-0.1 -0.021 59.2 106.3 70.8 177.3 -12.1 27.2 26.5 13 13 A G + 0 0 81 1,-0.2 2,-0.5 0, 0.0 -1,-0.1 0.649 61.7 109.5 87.2 16.2 -12.4 28.5 23.0 14 14 A R + 0 0 234 2,-0.0 2,-0.4 0, 0.0 -1,-0.2 -0.943 37.6 165.4-130.9 108.0 -8.7 28.6 22.7 15 15 A E + 0 0 175 -2,-0.5 2,-0.2 -3,-0.1 0, 0.0 -0.979 3.1 157.7-123.6 137.4 -6.8 26.2 20.5 16 16 A N - 0 0 112 -2,-0.4 2,-0.9 2,-0.1 -2,-0.0 -0.781 34.7-133.4-161.1 111.9 -3.2 26.5 19.3 17 17 A L + 0 0 156 -2,-0.2 2,-0.3 3,-0.0 3,-0.1 -0.562 30.6 176.5 -77.6 103.7 -1.1 23.6 18.1 18 18 A Y + 0 0 188 -2,-0.9 -2,-0.1 1,-0.2 0, 0.0 -0.746 51.1 26.8 -99.1 154.4 2.4 23.7 19.8 19 19 A F - 0 0 151 -2,-0.3 -1,-0.2 2,-0.0 3,-0.0 0.934 60.1-151.5 62.5 100.5 5.1 21.1 19.4 20 20 A Q - 0 0 212 -3,-0.1 2,-0.1 1,-0.1 -2,-0.0 0.973 49.2 -97.2 -62.5 -55.4 4.9 19.2 16.1 21 21 A G + 0 0 48 3,-0.0 2,-0.3 0, 0.0 3,-0.1 0.035 56.1 151.4 131.6 114.3 6.5 16.0 17.4 22 22 A H + 0 0 125 1,-0.1 3,-0.1 -2,-0.1 0, 0.0 -0.949 48.3 53.2-156.3 172.5 10.1 14.8 17.3 23 23 A M S S+ 0 0 181 -2,-0.3 2,-0.2 1,-0.3 -1,-0.1 0.777 92.3 103.0 63.9 29.2 12.7 12.7 19.1 24 24 A A S S- 0 0 90 -3,-0.1 2,-0.5 3,-0.0 -1,-0.3 -0.678 83.8 -73.0-128.9-178.1 10.2 9.8 19.1 25 25 A A - 0 0 87 -2,-0.2 2,-0.5 -3,-0.1 -3,-0.0 -0.701 49.4-117.4 -84.6 127.6 9.5 6.6 17.2 26 26 A R - 0 0 213 -2,-0.5 2,-0.8 2,-0.1 -1,-0.1 -0.494 26.1-161.2 -67.1 114.8 8.2 7.1 13.6 27 27 A I - 0 0 143 -2,-0.5 2,-2.9 1,-0.1 3,-0.2 -0.873 66.2 -48.1-101.4 103.4 4.8 5.5 13.4 28 28 A T S S- 0 0 97 -2,-0.8 -2,-0.1 1,-0.2 -1,-0.1 -0.311 78.9-121.2 73.1 -60.0 4.0 5.0 9.7 29 29 A G S S+ 0 0 39 -2,-2.9 3,-0.2 2,-0.0 -1,-0.2 0.878 82.9 0.9 82.9 90.3 5.1 8.4 8.6 30 30 A E S S- 0 0 173 -3,-0.2 2,-2.2 1,-0.2 -2,-0.1 0.982 73.0-143.1 61.1 85.4 2.2 10.3 6.9 31 31 A P + 0 0 116 0, 0.0 -1,-0.2 0, 0.0 2,-0.0 -0.528 47.6 154.8 -72.6 76.6 -0.8 7.9 7.0 32 32 A S - 0 0 88 -2,-2.2 3,-0.4 -3,-0.2 2,-0.1 -0.082 42.3 -72.8 -97.9-165.1 -2.0 9.0 3.6 33 33 A K S S+ 0 0 183 1,-0.2 -1,-0.2 -2,-0.0 3,-0.1 -0.396 102.9 39.2 -91.1 167.1 -4.0 7.5 0.8 34 34 A K S S+ 0 0 193 1,-0.2 2,-0.3 -2,-0.1 -1,-0.2 0.722 75.0 165.9 66.3 25.0 -3.1 4.8 -1.7 35 35 A A - 0 0 71 -3,-0.4 -1,-0.2 1,-0.1 2,-0.0 -0.553 46.5-100.3 -72.8 131.9 -1.3 2.8 1.1 36 36 A V - 0 0 66 -2,-0.3 2,-0.5 -3,-0.1 -1,-0.1 -0.294 34.4-140.7 -56.5 126.2 -0.6 -0.7 0.0 37 37 A S > - 0 0 55 1,-0.1 3,-0.9 -3,-0.1 -1,-0.1 -0.822 10.3-161.8 -94.1 125.0 -3.1 -3.1 1.6 38 38 A D G > S+ 0 0 127 -2,-0.5 3,-1.6 1,-0.2 -1,-0.1 0.562 78.7 85.6 -81.8 -8.3 -1.6 -6.4 2.8 39 39 A R G 3 S+ 0 0 207 1,-0.3 -1,-0.2 3,-0.0 -3,-0.0 0.650 86.4 54.7 -67.1 -15.9 -5.1 -8.0 2.8 40 40 A L G X S+ 0 0 22 -3,-0.9 3,-1.2 2,-0.1 2,-0.5 0.436 82.6 108.3 -97.5 0.3 -4.6 -8.8 -0.9 41 41 A I T < S+ 0 0 48 -3,-1.6 42,-0.1 1,-0.2 3,-0.1 -0.670 78.8 28.0 -82.0 121.6 -1.4 -10.7 -0.3 42 42 A G T 3 S+ 0 0 64 40,-1.6 -1,-0.2 -2,-0.5 2,-0.2 0.472 101.9 104.8 106.2 6.1 -1.8 -14.4 -0.7 43 43 A R S < S- 0 0 181 -3,-1.2 39,-2.1 39,-0.2 -1,-0.4 -0.633 75.0 -86.2-114.0 174.1 -4.7 -14.1 -3.2 44 44 A K E -A 81 0A 114 -2,-0.2 18,-0.4 37,-0.2 2,-0.3 -0.503 40.1-178.1 -82.0 145.7 -5.0 -14.6 -6.9 45 45 A G E -A 80 0A 5 35,-3.3 35,-3.2 -2,-0.2 2,-0.4 -0.920 20.4-125.4-135.2 165.7 -4.4 -11.9 -9.5 46 46 A V E -AB 79 60A 49 14,-1.2 14,-2.5 -2,-0.3 2,-0.6 -0.890 21.1-121.6-115.5 143.7 -4.6 -11.7 -13.3 47 47 A V E + B 0 59A 0 31,-2.5 30,-3.0 -2,-0.4 12,-0.2 -0.733 33.8 165.3 -87.1 120.6 -1.9 -10.6 -15.7 48 48 A M E S+ 0 0 94 10,-2.9 2,-0.4 -2,-0.6 11,-0.2 0.697 70.5 36.0-103.0 -29.1 -2.8 -7.6 -17.8 49 49 A E E S- B 0 58A 102 9,-2.3 9,-0.6 26,-0.1 -1,-0.3 -0.983 99.0 -93.9-128.2 140.2 0.7 -6.8 -19.1 50 50 A A - 0 0 45 -2,-0.4 2,-0.5 7,-0.2 25,-0.2 -0.222 40.8-144.8 -54.4 130.8 3.5 -9.3 -20.0 51 51 A I B +F 74 0B 0 23,-2.4 23,-2.4 6,-0.2 5,-0.2 -0.859 21.8 174.9-105.0 130.8 5.8 -9.9 -17.0 52 52 A S - 0 0 33 3,-2.0 18,-0.4 -2,-0.5 5,-0.1 -0.860 41.5-119.6-127.9 165.0 9.5 -10.4 -17.5 53 53 A P S S+ 0 0 75 0, 0.0 3,-0.2 0, 0.0 20,-0.1 0.644 116.0 48.9 -77.3 -14.2 12.5 -10.8 -15.1 54 54 A Q S S+ 0 0 190 1,-0.3 2,-0.4 15,-0.0 15,-0.0 0.789 125.1 20.2 -92.1 -33.8 14.1 -7.7 -16.6 55 55 A N S S- 0 0 115 13,-0.0 -3,-2.0 0, 0.0 -1,-0.3 -0.982 83.3-121.7-143.4 124.8 11.0 -5.5 -16.4 56 56 A S - 0 0 24 -2,-0.4 13,-0.2 -5,-0.2 2,-0.1 -0.240 27.4-146.9 -65.0 152.6 8.0 -6.0 -14.2 57 57 A G E - C 0 68A 1 11,-2.8 11,-2.4 -5,-0.1 2,-0.5 -0.225 20.1 -90.4-106.6-162.6 4.6 -6.3 -15.7 58 58 A L E +BC 49 67A 59 -9,-0.6 -10,-2.9 9,-0.2 -9,-2.3 -0.960 35.7 179.2-122.6 123.0 1.0 -5.3 -14.7 59 59 A V E -BC 47 66A 0 7,-2.7 7,-3.1 -2,-0.5 2,-0.8 -0.919 26.1-131.7-119.0 148.2 -1.4 -7.4 -12.7 60 60 A K E -BC 46 65A 87 -14,-2.5 -14,-1.2 -2,-0.4 2,-0.6 -0.850 24.0-173.5-101.6 101.8 -4.9 -6.6 -11.6 61 61 A V E > - C 0 64A 3 3,-2.3 3,-2.6 -2,-0.8 2,-1.8 -0.877 69.4 -39.8 -99.2 117.0 -5.2 -7.4 -7.9 62 62 A D T 3 S- 0 0 141 -2,-0.6 -2,-0.1 -18,-0.4 3,-0.0 -0.506 127.6 -34.0 65.6 -84.1 -8.8 -7.0 -6.7 63 63 A G T 3 S+ 0 0 33 -2,-1.8 2,-0.3 2,-0.0 -1,-0.3 0.289 118.5 95.9-144.8 5.2 -9.4 -3.8 -8.8 64 64 A E E < -C 61 0A 107 -3,-2.6 -3,-2.3 2,-0.0 2,-0.7 -0.795 67.6-131.1-106.8 142.5 -6.0 -2.1 -8.7 65 65 A T E -C 60 0A 82 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.835 34.6-179.2 -92.6 115.1 -3.3 -2.4 -11.3 66 66 A W E -C 59 0A 46 -7,-3.1 -7,-2.7 -2,-0.7 2,-0.4 -0.829 32.5-111.0-115.0 151.4 0.0 -3.2 -9.6 67 67 A R E -C 58 0A 152 21,-0.5 23,-2.7 -2,-0.3 2,-0.4 -0.682 41.9-171.7 -75.7 131.7 3.5 -3.7 -10.9 68 68 A A E -Cd 57 90A 0 -11,-2.4 -11,-2.8 -2,-0.4 2,-0.3 -0.983 11.4-163.6-133.0 140.1 4.5 -7.3 -10.6 69 69 A T E + d 0 91A 20 21,-3.1 23,-2.3 -2,-0.4 2,-0.3 -0.819 11.3 171.5-118.7 159.7 7.7 -9.2 -11.0 70 70 A S - 0 0 13 -18,-0.4 23,-0.1 -2,-0.3 4,-0.1 -0.959 42.4-117.7-157.6 168.0 8.5 -12.9 -11.4 71 71 A G S S+ 0 0 69 -2,-0.3 2,-0.2 21,-0.2 22,-0.1 0.581 98.3 51.8 -88.5 -11.4 11.3 -15.3 -12.3 72 72 A T S S- 0 0 92 -20,-0.1 2,-0.6 -19,-0.0 -2,-0.1 -0.742 95.9 -95.6-119.6 167.9 9.5 -16.5 -15.4 73 73 A V - 0 0 107 -2,-0.2 2,-0.4 -21,-0.1 -21,-0.2 -0.762 41.2-164.1 -87.4 119.6 7.9 -14.8 -18.4 74 74 A L B -F 51 0B 4 -23,-2.4 -23,-2.4 -2,-0.6 2,-0.1 -0.894 3.1-150.6-110.4 132.8 4.2 -14.4 -17.8 75 75 A D > - 0 0 109 -2,-0.4 3,-1.0 -25,-0.2 -28,-0.2 -0.413 32.9 -79.9 -95.3 174.9 1.8 -13.6 -20.7 76 76 A V T 3 S+ 0 0 59 1,-0.2 -28,-0.2 -28,-0.1 -1,-0.1 -0.464 110.6 31.1 -78.5 141.2 -1.5 -11.7 -20.5 77 77 A G T 3 S+ 0 0 49 -30,-3.0 -1,-0.2 1,-0.3 -29,-0.1 0.348 89.8 128.7 96.3 -6.6 -4.6 -13.4 -19.3 78 78 A E < - 0 0 65 -3,-1.0 -31,-2.5 -31,-0.2 2,-0.5 -0.294 57.3-123.3 -76.7 167.2 -2.7 -15.7 -16.9 79 79 A E E -A 46 0A 87 -33,-0.2 16,-3.1 16,-0.2 2,-0.3 -0.950 30.3-177.6-116.0 128.1 -3.5 -16.1 -13.3 80 80 A V E -AE 45 94A 0 -35,-3.2 -35,-3.3 -2,-0.5 2,-0.5 -0.863 23.0-131.4-124.5 157.1 -0.8 -15.4 -10.6 81 81 A S E -AE 44 93A 44 12,-3.1 12,-1.7 -2,-0.3 2,-0.8 -0.942 20.8-133.9-107.2 127.4 -0.5 -15.7 -6.9 82 82 A V E + E 0 92A 1 -39,-2.1 -40,-1.6 -2,-0.5 10,-0.2 -0.724 30.7 170.6 -82.3 110.0 0.8 -12.7 -5.0 83 83 A K E - 0 0 122 8,-2.5 2,-0.3 -2,-0.8 -1,-0.2 0.872 56.5 -20.3 -89.1 -41.9 3.4 -14.1 -2.6 84 84 A A E - E 0 91A 45 7,-1.4 7,-3.2 -43,-0.0 2,-0.5 -0.917 58.8-104.4-157.4 177.9 5.1 -11.0 -1.2 85 85 A I E - E 0 90A 68 -2,-0.3 5,-0.2 5,-0.2 3,-0.1 -0.975 17.8-173.7-120.2 122.4 5.9 -7.3 -1.7 86 86 A E - 0 0 90 3,-1.7 2,-0.4 -2,-0.5 4,-0.2 0.352 65.5 -76.9 -96.3 5.9 9.4 -6.3 -2.8 87 87 A G S S- 0 0 45 2,-0.8 -1,-0.0 1,-0.0 0, 0.0 -0.876 109.6 -0.6 142.1-107.4 8.6 -2.6 -2.4 88 88 A V S S+ 0 0 127 -2,-0.4 -21,-0.5 -3,-0.1 2,-0.3 0.366 129.2 64.8 -95.0 1.0 6.6 -0.7 -5.0 89 89 A K S S- 0 0 70 -23,-0.1 -3,-1.7 -21,-0.0 -2,-0.8 -0.845 80.6-126.0-120.7 158.6 6.4 -4.0 -6.9 90 90 A L E -dE 68 85A 1 -23,-2.7 -21,-3.1 -2,-0.3 2,-0.8 -0.805 13.6-130.9-106.2 148.0 4.7 -7.3 -6.1 91 91 A V E +dE 69 84A 48 -7,-3.2 -8,-2.5 -2,-0.3 -7,-1.4 -0.862 41.7 165.4 -97.3 107.6 6.3 -10.7 -6.1 92 92 A V E - E 0 82A 0 -23,-2.3 2,-0.3 -2,-0.8 -21,-0.2 -0.887 22.4-165.8-125.6 153.6 4.0 -13.0 -8.0 93 93 A E E - E 0 81A 93 -12,-1.7 -12,-3.1 -2,-0.3 2,-0.2 -0.973 31.0-102.1-135.9 155.0 4.2 -16.4 -9.6 94 94 A K E - E 0 80A 60 -2,-0.3 -14,-0.3 -14,-0.3 2,-0.0 -0.465 33.2-109.3 -83.8 141.3 1.9 -18.1 -12.1 95 95 A L - 0 0 41 -16,-3.1 2,-0.4 -2,-0.2 -16,-0.2 -0.345 40.4-117.5 -58.8 146.7 -0.6 -20.7 -11.3 96 96 A E - 0 0 157 1,-0.0 2,-0.1 -2,-0.0 -1,-0.1 -0.747 21.1-148.2 -98.9 137.0 0.3 -24.1 -12.6 97 97 A E - 0 0 135 -2,-0.4 2,-0.4 2,-0.0 -1,-0.0 -0.283 11.4-132.0 -86.1 179.7 -1.6 -26.1 -15.1 98 98 A Q - 0 0 163 -2,-0.1 2,-1.3 2,-0.0 -2,-0.0 -0.978 3.5-145.1-140.1 124.7 -1.9 -29.9 -15.4 99 99 A K - 0 0 185 -2,-0.4 2,-1.8 1,-0.1 -2,-0.0 -0.698 17.2-177.7 -91.5 88.4 -1.4 -32.0 -18.5 100 100 A G 0 0 77 -2,-1.3 -1,-0.1 1,-0.2 -2,-0.0 -0.560 360.0 360.0 -84.3 73.8 -3.9 -34.8 -18.2 101 101 A S 0 0 181 -2,-1.8 -1,-0.2 0, 0.0 -2,-0.0 0.419 360.0 360.0-140.1 360.0 -3.0 -36.6 -21.4