==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 30-JUN-08 2K5V . COMPND 2 MOLECULE: REPLICATION PROTEIN A; . SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCOCCUS MARIPALUDIS; . AUTHOR J.M.ARAMINI,M.MAGLAQUI,M.JIANG,C.CICCOSANTI,R.XIAO,R.NAIR, . 98 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6461.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 76 77.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 6 6.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 42 42.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 15 15.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 12.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 172 A M 0 0 185 0, 0.0 2,-0.6 0, 0.0 14,-0.5 0.000 360.0 360.0 360.0 89.2 6.3 8.6 13.7 2 173 A N - 0 0 97 12,-0.1 14,-0.2 1,-0.0 2,-0.1 -0.693 360.0-145.8 -79.8 117.5 4.9 9.2 10.2 3 174 A Y B -a 16 0A 33 12,-2.6 14,-0.8 -2,-0.6 2,-0.3 -0.457 5.6-143.7 -87.2 152.4 7.2 7.4 7.7 4 175 A K > - 0 0 84 12,-0.2 3,-1.3 -2,-0.1 4,-0.5 -0.718 36.1-103.3-100.8 164.5 8.3 8.4 4.2 5 176 A I G > S+ 0 0 15 1,-0.3 3,-0.8 -2,-0.3 45,-0.1 0.838 125.1 54.5 -58.3 -31.1 8.8 5.8 1.5 6 177 A S G 3 S+ 0 0 88 1,-0.2 -1,-0.3 43,-0.1 44,-0.0 0.757 101.0 59.7 -71.9 -24.1 12.6 6.2 2.0 7 178 A E G < S+ 0 0 92 -3,-1.3 2,-0.4 2,-0.0 -1,-0.2 0.537 81.3 111.3 -81.6 -5.9 12.2 5.5 5.7 8 179 A L < + 0 0 19 -3,-0.8 69,-0.0 -4,-0.5 5,-0.0 -0.554 44.4 176.9 -75.9 125.6 10.8 2.0 4.9 9 180 A M > - 0 0 110 -2,-0.4 3,-1.3 67,-0.1 67,-0.2 -0.863 40.5 -76.6-124.1 159.0 13.0 -0.9 5.9 10 181 A P T 3 S+ 0 0 67 0, 0.0 67,-0.3 0, 0.0 3,-0.1 -0.309 117.1 12.6 -57.4 133.2 12.5 -4.8 5.7 11 182 A N T 3 S+ 0 0 107 65,-1.3 2,-0.6 1,-0.2 66,-0.2 0.762 93.9 141.7 69.6 29.9 10.3 -6.2 8.4 12 183 A L E < - B 0 76A 29 64,-1.9 64,-3.1 -3,-1.3 2,-0.8 -0.895 40.2-157.9-106.1 118.3 9.1 -2.6 9.4 13 184 A S E + B 0 75A 82 -2,-0.6 2,-0.3 62,-0.3 62,-0.3 -0.839 41.4 130.6 -92.6 109.0 5.4 -2.1 10.4 14 185 A G E - B 0 74A 5 60,-2.5 60,-3.0 -2,-0.8 2,-0.4 -0.935 54.0-107.4-153.3 172.6 4.7 1.6 9.8 15 186 A T E - B 0 73A 39 -14,-0.5 -12,-2.6 -2,-0.3 58,-0.3 -0.928 33.1-178.7-114.2 129.8 2.4 4.3 8.3 16 187 A I E -aB 3 72A 0 56,-2.9 56,-1.8 -2,-0.4 2,-0.5 -0.799 22.4-135.9-122.2 163.7 3.3 6.4 5.2 17 188 A N E + B 0 71A 49 -14,-0.8 2,-0.3 -2,-0.3 -12,-0.2 -0.975 42.5 137.8-121.8 118.5 1.8 9.2 3.2 18 189 A A E - B 0 70A 6 52,-2.0 52,-2.0 -2,-0.5 2,-0.3 -0.924 48.9 -95.1-151.3 171.7 2.0 8.9 -0.7 19 190 A E E -CB 45 69A 78 26,-2.6 26,-1.8 -2,-0.3 2,-1.0 -0.763 35.3-118.2 -96.0 141.7 0.1 9.4 -4.0 20 191 A V E +C 44 0A 2 48,-1.9 47,-2.3 -2,-0.3 24,-0.2 -0.665 34.3 173.7 -79.0 103.5 -1.6 6.5 -5.8 21 192 A V E + 0 0 56 22,-2.5 2,-0.3 -2,-1.0 -1,-0.2 0.773 69.2 15.3 -81.4 -28.6 0.2 6.2 -9.2 22 193 A A E -C 43 0A 16 21,-1.3 21,-1.7 43,-0.1 2,-0.5 -0.984 59.6-163.1-151.3 136.4 -1.7 3.1 -10.3 23 194 A A E -C 42 0A 43 -2,-0.3 19,-0.2 19,-0.2 43,-0.1 -0.962 14.4-173.2-124.0 114.4 -4.9 1.3 -9.1 24 195 A Y E - 0 0 132 17,-2.2 17,-0.2 -2,-0.5 -2,-0.0 -0.803 31.0 -94.5-109.4 148.7 -5.4 -2.3 -10.2 25 196 A P E - 0 0 104 0, 0.0 16,-0.7 0, 0.0 -1,-0.1 -0.070 47.0 -98.7 -55.4 156.7 -8.6 -4.6 -9.8 26 197 A K E -C 40 0A 96 14,-0.2 2,-0.3 34,-0.1 14,-0.2 -0.167 30.1-148.1 -73.4 169.2 -8.9 -6.9 -6.8 27 198 A K E -C 39 0A 88 12,-1.6 12,-2.9 2,-0.0 2,-0.5 -0.977 1.0-149.3-138.6 149.5 -8.1 -10.7 -6.8 28 199 A E E +C 38 0A 140 -2,-0.3 10,-0.2 10,-0.2 2,-0.2 -0.931 29.0 148.2-130.8 112.6 -9.7 -13.6 -4.7 29 200 A F E -C 37 0A 84 8,-2.8 8,-2.9 -2,-0.5 2,-0.5 -0.648 44.7-100.7-127.7-178.7 -7.8 -16.7 -3.7 30 201 A S E -C 36 0A 94 6,-0.3 6,-0.2 -2,-0.2 5,-0.1 -0.951 34.5-125.4-111.2 126.6 -7.6 -19.3 -0.9 31 202 A R > - 0 0 100 4,-2.7 3,-2.5 -2,-0.5 6,-0.0 -0.293 25.8-112.3 -63.6 151.3 -4.9 -19.0 1.8 32 203 A K T 3 S+ 0 0 188 1,-0.3 -1,-0.1 2,-0.1 4,-0.1 0.803 118.5 62.6 -53.3 -29.6 -2.6 -22.1 2.4 33 204 A D T 3 S- 0 0 111 2,-0.2 -1,-0.3 1,-0.1 3,-0.1 0.501 121.5-107.0 -77.7 -4.9 -4.3 -22.4 5.8 34 205 A G S < S+ 0 0 60 -3,-2.5 -2,-0.1 1,-0.4 -1,-0.1 -0.125 83.8 115.7 107.6 -37.7 -7.7 -23.0 4.1 35 206 A T S S- 0 0 79 -5,-0.1 -4,-2.7 1,-0.1 -1,-0.4 -0.348 72.2-103.8 -68.7 146.0 -9.3 -19.6 4.8 36 207 A K E -C 30 0A 162 -6,-0.2 2,-0.3 -3,-0.1 -6,-0.3 -0.405 39.1-172.8 -71.9 145.7 -10.2 -17.3 1.9 37 208 A G E -C 29 0A 2 -8,-2.9 -8,-2.8 -2,-0.1 2,-0.2 -0.997 11.5-149.0-143.9 136.7 -8.0 -14.3 1.1 38 209 A Q E -C 28 0A 37 -2,-0.3 19,-2.1 -10,-0.2 2,-0.3 -0.662 9.0-159.9-102.5 161.2 -8.3 -11.3 -1.3 39 210 A L E -CD 27 56A 41 -12,-2.9 -12,-1.6 17,-0.2 2,-0.4 -0.985 6.5-174.2-145.2 126.4 -5.4 -9.4 -3.0 40 211 A K E -CD 26 55A 25 15,-2.2 15,-2.4 -2,-0.3 2,-0.4 -0.986 18.1-138.5-126.9 135.1 -5.3 -5.9 -4.6 41 212 A S E + D 0 54A 32 -16,-0.7 -17,-2.2 -2,-0.4 2,-0.3 -0.762 29.5 163.8 -98.2 128.4 -2.4 -4.4 -6.6 42 213 A L E -CD 23 53A 12 11,-2.2 11,-1.8 -2,-0.4 2,-0.4 -0.910 25.9-147.1-137.1 163.7 -1.4 -0.7 -6.1 43 214 A F E -CD 22 52A 50 -21,-1.7 -22,-2.5 -2,-0.3 -21,-1.3 -0.993 16.5-171.1-135.2 129.9 1.6 1.7 -6.8 44 215 A L E -CD 20 51A 5 7,-2.9 7,-2.6 -2,-0.4 2,-0.3 -0.888 0.8-168.8-120.7 148.6 2.5 4.6 -4.5 45 216 A K E +CD 19 50A 86 -26,-1.8 -26,-2.6 -2,-0.3 2,-0.3 -0.982 7.9 170.3-136.9 152.0 5.0 7.5 -5.0 46 217 A D E > - D 0 49A 44 3,-2.2 3,-1.5 -2,-0.3 -28,-0.1 -0.951 49.8 -98.7-148.8 165.6 6.6 10.3 -2.8 47 218 A D T 3 S+ 0 0 169 -2,-0.3 3,-0.1 1,-0.3 -29,-0.0 0.816 125.0 50.9 -57.3 -30.7 9.3 12.9 -3.0 48 219 A T T 3 S- 0 0 64 1,-0.3 -1,-0.3 -3,-0.0 2,-0.3 0.588 129.0 -64.2 -84.1 -11.5 11.6 10.5 -1.1 49 220 A G E < -D 46 0A 29 -3,-1.5 -3,-2.2 2,-0.0 2,-0.3 -0.904 50.0 -86.9 152.2 179.8 10.9 7.6 -3.4 50 221 A S E -D 45 0A 55 -2,-0.3 2,-0.3 -5,-0.3 -5,-0.2 -0.894 31.6-174.4-124.2 155.4 8.3 5.1 -4.8 51 222 A I E -D 44 0A 9 -7,-2.6 -7,-2.9 -2,-0.3 2,-0.5 -0.974 27.9-112.4-147.1 156.8 6.9 1.7 -3.6 52 223 A R E -De 43 84A 96 31,-0.6 33,-1.3 -2,-0.3 -9,-0.3 -0.828 35.0-147.2 -95.1 124.0 4.6 -1.1 -4.7 53 224 A G E -De 42 85A 4 -11,-1.8 -11,-2.2 -2,-0.5 2,-0.3 -0.579 12.1-167.6 -95.4 152.9 1.4 -1.5 -2.6 54 225 A T E -De 41 86A 16 31,-1.2 33,-2.3 -2,-0.2 2,-0.4 -0.932 3.0-163.4-144.4 115.5 -0.5 -4.7 -1.6 55 226 A L E -D 40 0A 0 -15,-2.4 -15,-2.2 -2,-0.3 2,-0.3 -0.814 11.8-157.0 -98.6 137.5 -4.0 -4.9 -0.1 56 227 A W E > -D 39 0A 91 31,-0.4 3,-1.8 -2,-0.4 -17,-0.2 -0.834 47.9 -28.5-114.6 151.0 -5.2 -8.2 1.6 57 228 A N G > S+ 0 0 54 -19,-2.1 3,-2.1 -2,-0.3 4,-0.3 -0.140 130.8 2.6 52.9-134.2 -8.7 -9.6 2.3 58 229 A E G > S+ 0 0 144 1,-0.3 3,-1.6 2,-0.2 4,-0.4 0.756 125.5 69.0 -56.4 -26.1 -11.4 -6.9 2.9 59 230 A L G X S+ 0 0 36 -3,-1.8 3,-1.2 1,-0.3 -1,-0.3 0.799 86.5 67.7 -63.4 -27.2 -8.9 -4.2 2.2 60 231 A A G < S+ 0 0 1 -3,-2.1 -1,-0.3 1,-0.3 -2,-0.2 0.644 96.8 54.4 -67.4 -14.2 -8.8 -5.4 -1.5 61 232 A D G < S+ 0 0 116 -3,-1.6 -1,-0.3 -4,-0.3 -2,-0.2 0.588 83.3 116.4 -92.0 -13.0 -12.4 -4.1 -1.7 62 233 A F S < S- 0 0 65 -3,-1.2 2,-0.5 -4,-0.4 29,-0.0 -0.296 74.2-113.4 -61.9 134.3 -11.4 -0.6 -0.5 63 234 A E + 0 0 110 29,-0.0 2,-0.4 -2,-0.0 29,-0.1 -0.581 44.7 165.7 -72.9 118.2 -11.9 2.2 -3.1 64 235 A V - 0 0 9 -2,-0.5 2,-0.3 -3,-0.0 6,-0.0 -0.958 14.3-164.6-139.1 117.5 -8.5 3.6 -4.2 65 236 A K > - 0 0 98 -2,-0.4 3,-1.6 1,-0.0 2,-0.5 -0.714 30.4 -98.3-107.0 152.1 -8.2 5.9 -7.3 66 237 A K T 3 S+ 0 0 153 -2,-0.3 -45,-0.2 1,-0.2 3,-0.1 -0.526 110.3 20.7 -70.2 117.8 -5.2 7.0 -9.4 67 238 A G T 3 S+ 0 0 47 -47,-2.3 -1,-0.2 -2,-0.5 2,-0.1 0.211 92.2 128.7 109.6 -13.2 -4.1 10.5 -8.3 68 239 A D < - 0 0 19 -3,-1.6 -48,-1.9 -48,-0.2 2,-0.6 -0.463 61.8-119.4 -77.6 145.8 -5.8 10.4 -4.8 69 240 A I E +B 19 0A 54 -50,-0.2 24,-1.6 -2,-0.1 25,-0.9 -0.771 41.1 176.6 -87.7 118.6 -3.8 11.3 -1.6 70 241 A A E -BF 18 92A 0 -52,-2.0 -52,-2.0 -2,-0.6 2,-0.7 -0.934 31.3-141.4-128.6 145.6 -3.8 8.3 0.8 71 242 A E E -BF 17 91A 79 20,-2.6 20,-1.1 -2,-0.3 2,-0.6 -0.915 27.5-165.0-103.9 110.4 -2.2 7.4 4.1 72 243 A V E -BF 16 90A 2 -56,-1.8 -56,-2.9 -2,-0.7 2,-0.6 -0.854 11.6-167.7-108.6 115.3 -1.1 3.8 4.1 73 244 A S E +BF 15 89A 17 16,-3.1 15,-2.9 -2,-0.6 16,-2.7 -0.878 32.5 138.9 -95.7 122.4 -0.2 1.8 7.2 74 245 A G E -BF 14 87A 0 -60,-3.0 -60,-2.5 -2,-0.6 2,-0.8 -0.982 57.3 -97.8-158.5 167.1 1.5 -1.5 6.4 75 246 A Y E -BF 13 86A 92 11,-3.1 11,-2.8 -2,-0.3 2,-0.3 -0.824 40.7-158.5 -92.9 104.5 4.2 -4.1 7.1 76 247 A V E +BF 12 85A 0 -64,-3.1 -64,-1.9 -2,-0.8 -65,-1.3 -0.655 22.6 153.7 -86.0 138.9 7.2 -3.5 4.7 77 248 A K E - F 0 84A 55 7,-2.5 7,-1.5 -67,-0.3 2,-0.5 -0.909 43.4 -93.7-151.1 176.3 9.7 -6.3 3.9 78 249 A Q E S+ F 0 83A 141 -2,-0.3 5,-0.3 5,-0.2 3,-0.1 -0.876 84.6 62.3-100.4 129.7 12.1 -7.6 1.3 79 250 A G E > S+ F 0 82A 51 3,-1.7 3,-1.1 -2,-0.5 2,-0.4 -0.382 74.3 71.5 163.3 -75.8 11.0 -10.2 -1.3 80 251 A Y T 3 S- 0 0 153 1,-0.3 -1,-0.3 2,-0.1 3,-0.2 -0.612 125.5 -14.5 -75.7 122.8 8.2 -9.3 -3.8 81 252 A S T 3 S- 0 0 74 -2,-0.4 2,-1.2 1,-0.3 -1,-0.3 0.783 124.0 -67.5 55.2 29.0 9.5 -6.9 -6.4 82 253 A G E < S+ F 0 79A 44 -3,-1.1 -3,-1.7 2,-0.0 2,-0.4 -0.510 129.0 26.2 91.7 -66.0 12.5 -6.3 -4.1 83 254 A L E S- F 0 78A 68 -2,-1.2 -31,-0.6 -5,-0.3 2,-0.4 -0.966 71.7-172.7-134.4 116.5 10.5 -4.6 -1.3 84 255 A E E -eF 52 77A 29 -7,-1.5 -7,-2.5 -2,-0.4 2,-0.7 -0.866 15.3-146.3-109.7 143.1 6.7 -5.2 -0.7 85 256 A I E -eF 53 76A 0 -33,-1.3 -31,-1.2 -2,-0.4 2,-1.1 -0.890 8.4-154.6-108.7 104.4 4.4 -3.3 1.7 86 257 A S E -eF 54 75A 38 -11,-2.8 -11,-3.1 -2,-0.7 -31,-0.1 -0.650 26.0-132.8 -77.4 98.9 1.7 -5.6 3.2 87 258 A V E + F 0 74A 8 -33,-2.3 -31,-0.4 -2,-1.1 -13,-0.3 -0.271 33.6 172.9 -63.9 131.3 -0.9 -3.0 4.0 88 259 A D E S+ 0 0 102 -15,-2.9 2,-0.4 1,-0.4 -14,-0.2 0.778 74.8 13.1 -99.6 -44.6 -2.6 -3.3 7.5 89 260 A N E - F 0 73A 90 -16,-2.7 -16,-3.1 2,-0.0 -1,-0.4 -1.000 66.8-177.7-135.9 137.1 -4.6 -0.0 7.3 90 261 A I E + F 0 72A 23 -2,-0.4 2,-0.3 -18,-0.2 -18,-0.2 -0.998 6.6 165.5-137.7 136.2 -5.5 2.2 4.3 91 262 A G E - F 0 71A 28 -20,-1.1 -20,-2.6 -2,-0.4 2,-0.7 -0.988 35.1-123.8-151.1 140.5 -7.4 5.5 4.1 92 263 A I E > - F 0 70A 13 -2,-0.3 3,-1.7 -22,-0.2 -22,-0.3 -0.740 18.3-155.4 -85.5 115.1 -7.9 8.3 1.5 93 264 A I T 3 S+ 0 0 93 -24,-1.6 -1,-0.2 -2,-0.7 -23,-0.2 0.845 89.7 58.8 -59.4 -35.9 -7.0 11.6 3.1 94 265 A E T 3 S+ 0 0 121 -25,-0.9 -1,-0.3 2,-0.0 -24,-0.1 0.459 82.8 119.2 -77.1 0.2 -9.2 13.7 0.8 95 266 A K < + 0 0 112 -3,-1.7 2,-0.3 1,-0.0 -4,-0.0 -0.213 33.4 161.7 -69.3 157.0 -12.4 11.8 1.8 96 267 A S - 0 0 114 0, 0.0 2,-0.2 0, 0.0 -2,-0.0 -0.925 16.0-156.6-158.4 179.3 -15.4 13.5 3.5 97 268 A L 0 0 164 -2,-0.3 0, 0.0 1,-0.2 0, 0.0 -0.885 360.0 360.0-153.1-177.0 -19.1 13.0 4.2 98 269 A E 0 0 237 -2,-0.2 -1,-0.2 0, 0.0 0, 0.0 0.840 360.0 360.0 -97.8 360.0 -22.5 14.7 5.0