==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER UNKNOWN FUNCTION 15-JUL-08 2K6P . COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN HP_1423; . SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; . AUTHOR J.KIM,S.PARK,K.LEE,W.SON,N.SOHN,B.LEE . 84 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6105.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 37 44.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 19.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 8.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 36 0, 0.0 40,-1.7 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 135.1 -4.8 5.8 -6.3 2 2 A R B > -A 40 0A 97 38,-0.2 4,-2.7 35,-0.0 3,-0.3 -0.933 360.0-103.4-135.3 158.6 -5.1 5.3 -2.5 3 3 A I H > S+ 0 0 1 36,-1.3 4,-1.0 -2,-0.3 5,-0.3 0.762 119.7 60.3 -49.9 -26.9 -3.4 3.3 0.2 4 4 A D H 4 S+ 0 0 26 35,-0.3 4,-0.5 1,-0.2 -1,-0.2 0.976 120.7 20.1 -67.3 -57.5 -6.4 1.1 0.1 5 5 A K H 4 S+ 0 0 77 -3,-0.3 4,-0.4 3,-0.1 -2,-0.2 0.470 118.3 71.7 -90.6 -4.6 -6.2 -0.0 -3.6 6 6 A F H < S+ 0 0 0 -4,-2.7 3,-0.2 2,-0.1 -3,-0.2 0.985 113.4 16.6 -74.4 -64.6 -2.5 0.9 -3.8 7 7 A L S <>S+ 0 0 0 -4,-1.0 6,-1.0 1,-0.2 5,-0.8 0.616 126.5 57.8 -85.8 -13.9 -0.8 -1.8 -1.7 8 8 A Q T 5S+ 0 0 43 -4,-0.5 7,-0.2 -5,-0.3 -1,-0.2 0.600 110.3 42.7 -90.2 -13.3 -3.8 -4.1 -1.7 9 9 A S T 5S+ 0 0 19 -4,-0.4 60,-2.1 -3,-0.2 -1,-0.2 0.004 101.4 69.7-120.1 26.8 -3.9 -4.3 -5.6 10 10 A V T 5S- 0 0 5 -3,-0.4 -2,-0.1 58,-0.2 -3,-0.1 0.590 117.1 -89.6-115.0 -21.4 -0.1 -4.7 -6.2 11 11 A G T 5S+ 0 0 41 -4,-0.4 3,-0.2 2,-0.2 -3,-0.1 0.433 99.9 102.9 123.1 5.3 0.4 -8.2 -4.8 12 12 A L S > + 0 0 75 -2,-0.4 4,-3.8 2,-0.2 3,-0.9 0.738 69.5 71.6 -93.0 -28.3 -10.0 -4.1 7.5 22 22 A M H 3>>S+ 0 0 25 1,-0.3 5,-2.4 2,-0.2 6,-1.7 0.816 99.7 49.7 -57.0 -31.4 -6.5 -2.8 7.0 23 23 A C H 345S+ 0 0 18 4,-0.2 -1,-0.3 3,-0.2 -2,-0.2 0.716 116.7 41.2 -80.2 -22.5 -7.8 0.7 7.9 24 24 A N H <45S+ 0 0 120 -3,-0.9 -2,-0.2 -4,-0.2 -1,-0.1 0.868 109.1 55.5 -90.5 -44.9 -9.5 -0.7 11.0 25 25 A V H <5S- 0 0 92 -4,-3.8 -3,-0.2 1,-0.1 -2,-0.2 0.797 118.0-109.1 -58.7 -29.0 -6.8 -3.1 12.2 26 26 A G T <5S+ 0 0 26 -4,-0.8 -3,-0.2 -5,-0.3 -4,-0.1 0.730 86.2 117.7 103.5 30.4 -4.4 -0.1 12.2 27 27 A A < + 0 0 0 -5,-2.4 2,-0.6 -6,-0.2 -4,-0.2 0.755 48.2 91.8 -95.7 -31.5 -2.2 -1.0 9.3 28 28 A V + 0 0 4 -6,-1.7 7,-2.1 7,-0.2 2,-0.3 -0.547 50.5 154.1 -70.2 111.4 -3.1 2.0 7.1 29 29 A W E -BC 34 48B 95 19,-0.8 19,-2.6 -2,-0.6 2,-0.5 -0.916 20.7-171.6-145.8 114.7 -0.5 4.7 7.9 30 30 A L E > S-B 33 0B 27 3,-2.4 3,-0.6 -2,-0.3 17,-0.1 -0.913 75.2 -5.5-110.7 130.4 0.6 7.5 5.5 31 31 A N T 3 S- 0 0 119 -2,-0.5 -1,-0.2 15,-0.5 3,-0.1 0.875 131.9 -55.0 58.6 39.0 3.5 9.8 6.3 32 32 A G T 3 S+ 0 0 43 -3,-0.3 2,-0.4 1,-0.2 -1,-0.3 0.805 119.6 109.4 65.5 29.3 3.8 8.2 9.8 33 33 A S E < S-B 30 0B 72 -3,-0.6 -3,-2.4 15,-0.0 -1,-0.2 -0.999 75.3-107.5-140.5 135.9 0.2 9.0 10.5 34 34 A C E -B 29 0B 92 -2,-0.4 2,-0.3 -5,-0.3 -5,-0.3 -0.341 42.2-176.2 -61.1 135.3 -2.9 6.7 10.8 35 35 A A - 0 0 15 -7,-2.1 -7,-0.2 1,-0.1 -9,-0.1 -0.957 19.8-124.0-135.8 153.9 -5.3 7.0 7.9 36 36 A K > - 0 0 138 -2,-0.3 3,-0.6 1,-0.1 -33,-0.1 0.065 44.1 -86.6 -79.6-165.4 -8.6 5.6 6.9 37 37 A A T 3 S+ 0 0 18 1,-0.2 -17,-0.1 -17,-0.1 -1,-0.1 -0.017 121.3 59.1 -95.9 29.3 -9.6 3.6 3.8 38 38 A S T 3 S+ 0 0 87 2,-0.1 2,-0.6 -34,-0.1 -1,-0.2 0.031 70.8 122.1-143.4 26.4 -10.3 6.8 1.8 39 39 A K < - 0 0 112 -3,-0.6 -36,-1.3 -4,-0.0 -35,-0.3 -0.854 57.3-133.4 -99.8 118.7 -6.9 8.6 2.0 40 40 A E B -A 2 0A 92 -2,-0.6 -38,-0.2 -38,-0.2 2,-0.2 -0.435 20.4-140.3 -69.9 139.8 -5.4 9.5 -1.4 41 41 A V - 0 0 5 -40,-1.7 2,-0.3 -2,-0.1 -1,-0.1 -0.594 10.8-149.1 -99.4 162.4 -1.7 8.7 -1.7 42 42 A K > - 0 0 143 -2,-0.2 3,-0.8 4,-0.2 18,-0.2 -0.844 24.0 -93.7-127.8 164.7 1.1 10.7 -3.4 43 43 A A T 3 S+ 0 0 45 -2,-0.3 18,-0.2 1,-0.2 19,-0.1 -0.371 105.3 22.5 -75.7 156.0 4.3 9.9 -5.3 44 44 A G T 3 S+ 0 0 61 16,-1.2 -1,-0.2 1,-0.2 17,-0.2 0.785 101.4 123.5 59.0 27.4 7.6 9.9 -3.5 45 45 A D < - 0 0 41 -3,-0.8 15,-2.7 15,-0.3 2,-0.3 -0.418 61.3-102.1-107.9-175.1 5.8 9.3 -0.3 46 46 A T E - D 0 59B 27 13,-0.3 -15,-0.5 -2,-0.1 2,-0.4 -0.737 19.3-155.4-110.1 159.6 5.9 6.6 2.4 47 47 A I E - D 0 58B 0 11,-3.1 11,-3.8 -2,-0.3 2,-0.2 -0.905 9.4-163.4-139.4 108.2 3.7 3.6 3.1 48 48 A S E -CD 29 57B 14 -19,-2.6 -19,-0.8 -2,-0.4 2,-0.3 -0.568 4.5-169.4 -90.0 154.2 3.4 2.1 6.6 49 49 A L E - D 0 56B 2 7,-1.1 7,-2.2 -2,-0.2 2,-0.4 -0.974 9.7-150.3-147.5 128.7 2.0 -1.3 7.3 50 50 A H + 0 0 107 -2,-0.3 2,-0.2 5,-0.2 5,-0.2 -0.845 26.3 158.2-103.0 133.8 1.0 -3.0 10.7 51 51 A Y - 0 0 68 -2,-0.4 4,-0.0 3,-0.1 -2,-0.0 -0.769 51.0-108.6-138.9-176.8 1.2 -6.7 11.2 52 52 A L S S+ 0 0 161 -2,-0.2 3,-0.1 1,-0.1 -2,-0.0 0.592 117.3 43.2 -93.2 -13.9 1.5 -9.4 13.9 53 53 A K S S- 0 0 165 1,-0.4 2,-0.3 0, 0.0 -1,-0.1 0.675 128.3 -47.2-102.2 -24.5 5.1 -10.3 13.0 54 54 A G - 0 0 33 2,-0.0 -1,-0.4 -5,-0.0 2,-0.2 -0.892 57.4 -84.0 165.8 164.9 6.4 -6.8 12.5 55 55 A I - 0 0 93 -2,-0.3 2,-0.4 -5,-0.2 -5,-0.2 -0.622 32.2-160.9 -92.3 151.3 5.9 -3.4 10.9 56 56 A E E -D 49 0B 96 -7,-2.2 -7,-1.1 -2,-0.2 2,-0.6 -0.989 5.4-166.1-136.5 126.3 6.9 -2.4 7.3 57 57 A E E +D 48 0B 81 -2,-0.4 24,-2.1 -9,-0.2 -9,-0.3 -0.907 15.7 179.3-116.0 105.9 7.4 1.0 5.9 58 58 A Y E -DE 47 80B 28 -11,-3.8 -11,-3.1 -2,-0.6 2,-0.4 -0.313 19.4-130.2 -94.1-179.9 7.6 1.2 2.1 59 59 A T E -DE 46 79B 35 20,-2.5 20,-1.6 -13,-0.3 2,-0.6 -0.994 13.0-128.0-139.0 130.3 8.0 4.2 -0.2 60 60 A I E - E 0 78B 0 -15,-2.7 -16,-1.2 -2,-0.4 -15,-0.3 -0.651 17.2-173.3 -79.6 119.5 6.0 5.3 -3.2 61 61 A L - 0 0 78 16,-2.6 2,-0.3 -2,-0.6 17,-0.2 0.760 68.3 -28.9 -81.4 -27.0 8.2 5.9 -6.3 62 62 A Q - 0 0 129 15,-1.1 -1,-0.3 -20,-0.1 3,-0.1 -0.964 55.6-110.0-177.7 166.7 5.3 7.2 -8.3 63 63 A I + 0 0 50 -2,-0.3 -20,-0.1 1,-0.1 14,-0.0 -0.812 28.6 171.7-116.7 90.5 1.5 7.1 -8.9 64 64 A P - 0 0 36 0, 0.0 -1,-0.1 0, 0.0 13,-0.0 0.610 45.3-127.9 -71.4 -11.4 0.7 5.4 -12.2 65 65 A A + 0 0 74 1,-0.2 2,-0.2 -3,-0.1 -2,-0.1 0.952 51.2 159.7 62.8 51.5 -3.0 5.4 -11.3 66 66 A L - 0 0 65 1,-0.1 -1,-0.2 -60,-0.0 3,-0.2 -0.666 39.7-148.6-104.1 160.4 -3.5 1.7 -11.9 67 67 A K S S+ 0 0 139 -2,-0.2 2,-0.5 1,-0.2 -1,-0.1 0.928 86.7 9.3 -89.6 -63.4 -6.2 -0.6 -10.6 68 68 A N - 0 0 108 -58,-0.1 -1,-0.2 -57,-0.0 -58,-0.2 -0.849 69.8-160.8-125.9 95.5 -4.6 -4.0 -10.3 69 69 A V - 0 0 8 -60,-2.1 5,-0.0 -2,-0.5 -3,-0.0 -0.648 16.4-152.0 -78.1 111.1 -0.8 -4.0 -10.7 70 70 A P - 0 0 86 0, 0.0 2,-1.0 0, 0.0 4,-0.2 0.171 39.2 -75.8 -67.2-168.0 0.3 -7.5 -11.5 71 71 A R S S+ 0 0 229 1,-0.2 -60,-0.1 2,-0.1 -61,-0.0 -0.319 119.1 65.0 -90.2 51.8 3.7 -9.1 -10.8 72 72 A K S S+ 0 0 180 -2,-1.0 3,-0.2 0, 0.0 -1,-0.2 0.547 110.7 19.7-133.2 -57.2 5.4 -7.2 -13.6 73 73 A D S > S+ 0 0 88 1,-0.2 3,-0.6 -3,-0.1 -2,-0.1 0.004 95.2 100.1-109.6 26.3 5.4 -3.5 -13.1 74 74 A T T 3 S+ 0 0 33 -4,-0.2 -1,-0.2 1,-0.2 4,-0.1 -0.017 70.4 68.0 -99.7 28.7 4.8 -3.6 -9.3 75 75 A H T 3 S+ 0 0 150 -3,-0.2 -1,-0.2 2,-0.1 -2,-0.1 0.177 94.0 52.4-129.5 13.6 8.4 -3.0 -8.5 76 76 A L S < S+ 0 0 121 -3,-0.6 -2,-0.1 -14,-0.0 3,-0.1 0.223 105.1 51.6-132.2 9.6 8.8 0.6 -9.7 77 77 A Y S S+ 0 0 45 1,-0.4 -16,-2.6 -16,-0.1 -15,-1.1 0.631 117.5 15.6-117.2 -29.0 5.9 2.2 -7.8 78 78 A I E +E 60 0B 10 -18,-0.3 -1,-0.4 -17,-0.2 -18,-0.2 -0.990 61.7 169.2-151.2 139.8 6.5 1.1 -4.2 79 79 A A E -E 59 0B 28 -20,-1.6 -20,-2.5 -2,-0.3 2,-0.4 -0.994 42.3 -91.5-150.1 152.1 9.4 -0.5 -2.3 80 80 A P E -E 58 0B 74 0, 0.0 -22,-0.3 0, 0.0 -2,-0.0 -0.494 47.4-120.0 -68.0 120.4 10.4 -1.3 1.3 81 81 A K + 0 0 103 -24,-2.1 2,-0.3 -2,-0.4 -24,-0.2 -0.238 44.6 159.4 -59.6 146.9 12.4 1.6 2.8 82 82 A T - 0 0 93 2,-0.0 2,-0.4 -24,-0.0 -1,-0.0 -0.983 34.5-139.4-164.4 161.8 15.9 0.9 4.0 83 83 A K 0 0 167 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.885 360.0 360.0-135.8 103.7 19.3 2.5 4.8 84 84 A E 0 0 223 -2,-0.4 -2,-0.0 0, 0.0 0, 0.0 -0.542 360.0 360.0 -96.7 360.0 22.5 0.7 3.7