==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 28-JUL-08 2K6X . COMPND 2 MOLECULE: RNA POLYMERASE SIGMA FACTOR RPOD; . SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; . AUTHOR E.C.SCHWARTZ,A.SHEKHTMAN,K.DUTTA,M.R.PRATT,D.COWBURN, . 72 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5760.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 42 58.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.8 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 5.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 30 41.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 25 A G 0 0 113 0, 0.0 2,-0.2 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 57.1 -15.3 11.2 -7.9 2 26 A S + 0 0 102 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.503 360.0 85.2-129.5-160.2 -14.9 11.5 -4.2 3 27 A H + 0 0 168 -2,-0.2 3,-0.1 1,-0.2 -1,-0.1 0.996 49.9 153.9 60.0 68.5 -16.5 9.9 -1.0 4 28 A M >> + 0 0 73 1,-0.1 3,-0.8 -3,-0.1 4,-0.8 -0.655 12.0 156.3-130.7 76.5 -14.4 6.8 -0.9 5 29 A P H 3> S+ 0 0 66 0, 0.0 4,-1.7 0, 0.0 5,-0.2 0.777 74.7 68.8 -67.9 -25.1 -14.1 5.5 2.7 6 30 A Q H 3> S+ 0 0 79 1,-0.2 4,-2.5 2,-0.2 32,-0.1 0.777 92.2 60.4 -66.2 -25.1 -13.4 2.1 1.3 7 31 A I H <> S+ 0 0 12 -3,-0.8 4,-2.5 2,-0.2 -1,-0.2 0.952 102.2 49.8 -65.2 -49.9 -10.1 3.5 0.1 8 32 A E H X S+ 0 0 105 -4,-0.8 4,-1.4 1,-0.2 -2,-0.2 0.918 116.4 42.1 -55.7 -46.5 -8.9 4.3 3.6 9 33 A R H X S+ 0 0 167 -4,-1.7 4,-2.4 1,-0.2 -1,-0.2 0.924 112.1 54.2 -67.6 -44.3 -9.8 0.8 4.9 10 34 A R H X S+ 0 0 0 -4,-2.5 4,-2.7 1,-0.2 -1,-0.2 0.853 103.3 56.4 -61.7 -37.9 -8.4 -0.9 1.8 11 35 A I H X S+ 0 0 1 -4,-2.5 4,-2.1 2,-0.2 -1,-0.2 0.939 110.3 44.3 -59.8 -46.3 -5.0 0.8 2.2 12 36 A K H X S+ 0 0 56 -4,-1.4 4,-2.2 1,-0.2 -2,-0.2 0.884 113.5 51.6 -67.0 -37.3 -4.7 -0.6 5.7 13 37 A K H X S+ 0 0 70 -4,-2.4 4,-2.9 2,-0.2 -1,-0.2 0.892 107.5 53.3 -62.6 -40.9 -5.9 -3.9 4.5 14 38 A L H X S+ 0 0 11 -4,-2.7 4,-1.8 2,-0.2 -2,-0.2 0.925 112.1 42.5 -64.9 -45.8 -3.3 -3.9 1.7 15 39 A I H X S+ 0 0 15 -4,-2.1 4,-2.1 1,-0.2 -1,-0.2 0.880 114.2 53.6 -66.4 -35.4 -0.4 -3.3 4.1 16 40 A S H X S+ 0 0 46 -4,-2.2 4,-2.4 -5,-0.2 -2,-0.2 0.917 105.3 53.3 -66.0 -42.1 -1.9 -5.8 6.5 17 41 A L H X S+ 0 0 42 -4,-2.9 4,-2.7 1,-0.2 -1,-0.2 0.918 110.2 46.8 -60.2 -43.1 -2.1 -8.5 3.8 18 42 A G H X S+ 0 0 0 -4,-1.8 4,-2.2 1,-0.2 5,-0.2 0.882 111.0 52.5 -66.4 -35.2 1.6 -8.0 3.0 19 43 A K H < S+ 0 0 120 -4,-2.1 -1,-0.2 2,-0.2 -2,-0.2 0.856 112.7 44.9 -66.7 -36.8 2.3 -8.1 6.7 20 44 A K H < S+ 0 0 136 -4,-2.4 -2,-0.2 1,-0.2 -1,-0.2 0.874 112.5 52.4 -68.8 -41.1 0.4 -11.4 6.9 21 45 A K H < S- 0 0 111 -4,-2.7 -2,-0.2 -5,-0.2 -1,-0.2 0.801 127.3 -95.8 -69.0 -31.6 2.2 -12.6 3.8 22 46 A G S < S+ 0 0 38 -4,-2.2 2,-0.4 -5,-0.2 -3,-0.1 -0.288 92.8 47.0 150.5 -58.8 5.6 -11.8 5.3 23 47 A Y S S- 0 0 168 -5,-0.2 2,-1.5 2,-0.1 -2,-0.2 -0.886 71.6-123.5-119.7 146.8 7.0 -8.5 4.3 24 48 A I + 0 0 58 -2,-0.4 36,-2.6 -5,-0.1 2,-0.3 -0.653 65.3 133.1 -85.1 86.5 5.5 -5.0 4.2 25 49 A T B > -a 60 0A 6 -2,-1.5 4,-1.7 34,-0.2 36,-0.2 -0.966 68.9-124.6-141.8 148.1 6.2 -4.4 0.5 26 50 A Y H > S+ 0 0 85 34,-2.3 4,-1.4 -2,-0.3 3,-0.2 0.911 120.2 45.0 -57.1 -42.2 4.4 -3.1 -2.6 27 51 A E H > S+ 0 0 112 1,-0.2 4,-2.0 33,-0.2 -1,-0.2 0.818 106.7 59.7 -70.1 -32.7 5.3 -6.4 -4.3 28 52 A D H > S+ 0 0 14 2,-0.2 4,-0.6 1,-0.2 -1,-0.2 0.786 102.4 53.1 -68.2 -29.4 4.3 -8.3 -1.2 29 53 A I H >X S+ 0 0 19 -4,-1.7 4,-0.6 2,-0.2 3,-0.5 0.904 107.0 51.9 -65.7 -44.0 0.8 -6.9 -1.6 30 54 A D H >< S+ 0 0 103 -4,-1.4 3,-0.9 1,-0.3 -2,-0.2 0.882 110.3 48.2 -57.3 -39.4 0.9 -8.1 -5.2 31 55 A K H 3< S+ 0 0 110 -4,-2.0 -1,-0.3 1,-0.2 -2,-0.2 0.648 101.4 65.4 -77.7 -15.4 1.8 -11.5 -3.8 32 56 A A H << S+ 0 0 4 -4,-0.6 -1,-0.2 -3,-0.5 -2,-0.2 0.651 88.6 162.0 -75.4 -18.5 -1.0 -11.2 -1.3 33 57 A F << + 0 0 138 -3,-0.9 -3,-0.0 -4,-0.6 3,-0.0 -0.183 50.5 57.4 -50.1 136.0 -3.4 -11.3 -4.3 34 58 A P S S+ 0 0 106 0, 0.0 2,-0.1 0, 0.0 -1,-0.1 0.380 86.5 171.4 -75.0 137.7 -6.2 -11.8 -4.2 35 59 A P - 0 0 31 0, 0.0 -21,-0.1 0, 0.0 -25,-0.0 -0.176 49.5 -93.1 -98.9-165.3 -6.5 -8.9 -1.8 36 60 A D S S+ 0 0 83 -26,-0.2 2,-0.2 -2,-0.1 -22,-0.1 0.217 70.1 145.1 -97.4 13.9 -9.4 -7.1 -0.3 37 61 A F - 0 0 79 1,-0.2 3,-0.1 -27,-0.1 -30,-0.1 -0.334 30.8-173.5 -63.2 120.7 -9.5 -4.5 -3.0 38 62 A E S S+ 0 0 88 1,-0.3 2,-0.3 -2,-0.2 -1,-0.2 0.701 76.4 6.8 -80.9 -22.3 -13.0 -3.4 -3.9 39 63 A G S S- 0 0 18 -33,-0.1 2,-0.6 2,-0.1 -1,-0.3 -0.986 70.4-124.2-158.0 147.0 -11.7 -1.3 -6.8 40 64 A F + 0 0 163 -2,-0.3 2,-0.4 -3,-0.1 3,-0.1 -0.922 41.1 174.9-101.0 120.6 -8.4 -0.8 -8.6 41 65 A D > - 0 0 36 -2,-0.6 4,-1.1 1,-0.1 -2,-0.1 -0.978 41.5-151.6-134.7 132.6 -7.7 2.9 -8.5 42 66 A T H > S+ 0 0 119 -2,-0.4 4,-1.4 1,-0.2 5,-0.2 0.827 107.8 58.4 -63.8 -31.9 -4.8 5.1 -9.6 43 67 A N H > S+ 0 0 84 1,-0.2 4,-2.8 2,-0.2 -1,-0.2 0.885 98.4 59.2 -62.3 -38.7 -6.0 7.4 -6.9 44 68 A L H > S+ 0 0 7 1,-0.2 4,-2.8 2,-0.2 -1,-0.2 0.877 99.5 57.0 -59.7 -39.0 -5.5 4.6 -4.4 45 69 A I H X S+ 0 0 46 -4,-1.1 4,-1.4 2,-0.2 -1,-0.2 0.928 113.8 37.3 -61.1 -46.5 -1.8 4.4 -5.3 46 70 A E H X S+ 0 0 106 -4,-1.4 4,-2.1 1,-0.2 -1,-0.2 0.878 116.4 55.1 -70.6 -34.6 -1.2 8.0 -4.4 47 71 A R H X S+ 0 0 102 -4,-2.8 4,-2.4 1,-0.2 -2,-0.2 0.825 103.3 54.8 -70.4 -32.6 -3.6 7.7 -1.5 48 72 A I H X S+ 0 0 10 -4,-2.8 4,-1.7 2,-0.2 -1,-0.2 0.950 110.6 45.3 -61.8 -49.6 -1.7 4.7 -0.1 49 73 A H H X S+ 0 0 58 -4,-1.4 4,-1.4 2,-0.2 -2,-0.2 0.837 112.9 49.7 -67.5 -34.9 1.6 6.7 -0.0 50 74 A E H >X S+ 0 0 53 -4,-2.1 4,-3.1 2,-0.2 3,-0.7 0.970 112.6 46.7 -67.6 -48.9 -0.1 9.8 1.5 51 75 A E H 3X>S+ 0 0 8 -4,-2.4 5,-1.3 1,-0.3 6,-1.3 0.796 105.8 63.5 -58.6 -29.5 -1.7 7.7 4.2 52 76 A L H 3<5S+ 0 0 52 -4,-1.7 -1,-0.3 4,-0.2 -2,-0.2 0.928 114.9 29.1 -57.6 -44.8 1.7 6.1 4.5 53 77 A E H <<5S+ 0 0 164 -4,-1.4 -2,-0.2 -3,-0.7 -3,-0.1 0.953 130.5 34.4 -84.0 -52.7 3.0 9.5 5.6 54 78 A K H <5S+ 0 0 130 -4,-3.1 -3,-0.2 1,-0.2 -2,-0.1 0.875 132.4 30.2 -72.9 -39.8 0.1 11.2 7.3 55 79 A H T <5S- 0 0 122 -4,-1.1 -3,-0.2 -5,-0.4 -1,-0.2 0.749 104.6-127.5 -93.1 -27.0 -1.5 8.0 8.8 56 80 A G < + 0 0 39 -5,-1.3 2,-0.4 -6,-0.3 -4,-0.2 0.733 39.4 173.2 94.2 23.1 1.9 6.3 9.2 57 81 A I - 0 0 16 -6,-1.3 2,-0.6 -9,-0.2 -1,-0.2 -0.505 30.8-128.7 -74.3 123.5 1.1 3.0 7.4 58 82 A N + 0 0 120 -2,-0.4 2,-0.3 -33,-0.0 -1,-0.1 -0.615 47.9 139.7 -82.5 118.3 4.2 0.9 7.2 59 83 A I - 0 0 23 -2,-0.6 2,-0.3 -10,-0.1 -34,-0.2 -0.968 35.9-142.6-156.9 137.6 5.0 -0.3 3.7 60 84 A V B -a 25 0A 69 -36,-2.6 -34,-2.3 -2,-0.3 -33,-0.2 -0.770 9.1-149.8-108.1 152.2 8.2 -0.6 1.7 61 85 A E - 0 0 73 -2,-0.3 -34,-0.1 2,-0.2 -1,-0.1 0.715 25.3-142.8 -88.2 -25.9 8.7 0.0 -2.0 62 86 A N + 0 0 98 1,-0.3 -1,-0.0 -36,-0.1 -37,-0.0 0.203 65.8 120.1 77.6 -12.5 11.6 -2.5 -2.3 63 87 A E S S- 0 0 133 1,-0.1 2,-2.5 2,-0.0 -1,-0.3 -0.655 75.9-121.8 -82.1 130.6 13.1 0.0 -4.7 64 88 A P + 0 0 93 0, 0.0 -1,-0.1 0, 0.0 3,-0.0 -0.419 57.6 145.2 -72.2 69.1 16.5 1.4 -3.6 65 89 A E + 0 0 145 -2,-2.5 2,-0.4 1,-0.2 -2,-0.0 0.190 58.3 77.3 -90.8 15.6 15.4 5.0 -3.6 66 90 A E S S+ 0 0 181 -3,-0.1 2,-0.3 2,-0.0 -1,-0.2 -0.764 72.0 127.5-120.6 79.7 17.7 5.4 -0.7 67 91 A E + 0 0 97 -2,-0.4 -2,-0.0 1,-0.1 0, 0.0 -0.940 22.7 156.3-140.2 154.4 21.0 5.5 -2.5 68 92 A E S S+ 0 0 187 -2,-0.3 -1,-0.1 0, 0.0 4,-0.0 0.355 78.8 5.4-139.8 -80.9 24.1 7.8 -2.7 69 93 A I S S- 0 0 144 2,-0.1 -2,-0.0 0, 0.0 3,-0.0 0.212 96.0-109.0-106.7 12.9 27.5 6.6 -3.9 70 94 A S S S+ 0 0 96 1,-0.1 -3,-0.1 2,-0.0 0, 0.0 0.956 84.8 116.6 57.2 56.1 26.4 3.1 -4.9 71 95 A A 0 0 84 1,-0.1 -1,-0.1 0, 0.0 -2,-0.1 -0.410 360.0 360.0-149.9 63.2 28.2 1.4 -2.0 72 96 A G 0 0 149 -4,-0.0 -1,-0.1 -3,-0.0 -2,-0.0 0.247 360.0 360.0-177.4 360.0 25.7 -0.3 0.3