==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=11-MAR-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CELL ADHESION 08-OCT-09 3K6I . COMPND 2 MOLECULE: T-CADHERIN; . SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; . AUTHOR L.SHAPIRO,C.CIATTO . 99 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5863.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 57 57.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 7 7.1 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 31 31.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 5.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A S 0 0 82 0, 0.0 26,-2.9 0, 0.0 27,-0.4 0.000 360.0 360.0 360.0 166.6 20.3 20.6 1.7 2 2 A I E -A 26 0A 19 24,-0.2 2,-0.6 25,-0.1 24,-0.2 -0.985 360.0-151.5-119.0 137.0 18.8 17.5 3.3 3 3 A L E -A 25 0A 98 22,-3.1 22,-2.2 -2,-0.4 2,-0.5 -0.939 13.7-177.7-109.2 109.3 18.6 17.0 7.0 4 4 A A - 0 0 24 -2,-0.6 20,-0.1 20,-0.2 88,-0.1 -0.936 8.6-163.1-104.5 126.5 18.6 13.3 8.1 5 5 A T - 0 0 77 -2,-0.5 18,-0.1 18,-0.3 -2,-0.0 -0.934 29.4-103.2-109.0 131.9 18.3 12.8 11.9 6 6 A P - 0 0 82 0, 0.0 2,-0.4 0, 0.0 89,-0.2 -0.199 36.3-143.3 -53.9 144.9 19.2 9.5 13.4 7 7 A I E -b 95 0B 9 87,-2.9 89,-3.0 15,-0.1 2,-0.4 -0.905 8.9-158.7-115.9 137.0 16.2 7.4 14.3 8 8 A L E -b 96 0B 110 -2,-0.4 89,-0.2 13,-0.3 87,-0.0 -0.968 10.5-172.7-113.9 130.9 15.9 5.1 17.4 9 9 A I E -b 97 0B 1 87,-2.7 89,-2.3 -2,-0.4 3,-0.1 -0.986 24.7-121.3-127.0 121.9 13.3 2.3 17.3 10 10 A P E > -b 98 0B 63 0, 0.0 3,-0.6 0, 0.0 55,-0.3 -0.350 38.3-104.9 -58.9 138.6 12.5 0.1 20.3 11 11 A E T 3 S+ 0 0 41 87,-2.7 55,-0.2 1,-0.2 60,-0.0 -0.287 94.0 12.6 -58.5 141.8 13.0 -3.5 19.7 12 12 A N T 3 S- 0 0 124 53,-2.8 -1,-0.2 1,-0.1 54,-0.1 0.869 80.7-165.1 62.6 44.0 10.1 -5.9 19.2 13 13 A Q < - 0 0 41 -3,-0.6 -1,-0.1 50,-0.2 -2,-0.0 -0.276 16.8-123.7 -57.0 143.0 7.3 -3.3 18.6 14 14 A R - 0 0 213 1,-0.1 -1,-0.1 49,-0.1 49,-0.0 -0.503 46.3 -94.4 -73.0 157.1 3.7 -4.4 18.7 15 15 A P S S+ 0 0 87 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.346 75.3 114.3 -93.7 164.3 1.6 -3.7 15.7 16 16 A P S S- 0 0 97 0, 0.0 47,-0.1 0, 0.0 -2,-0.0 0.287 72.7-132.8-101.5 154.5 -0.3 -2.3 13.7 17 17 A F S S+ 0 0 49 -2,-0.2 2,-0.2 45,-0.1 45,-0.1 -0.881 74.8 61.3-120.0 160.5 2.3 -1.6 11.1 18 18 A P - 0 0 73 0, 0.0 2,-0.4 0, 0.0 44,-0.2 0.529 69.3-174.7 -70.2 157.7 3.5 0.4 9.2 19 19 A R E -E 61 0C 86 42,-2.3 42,-2.4 -2,-0.2 2,-0.2 -0.980 26.3-120.5-123.1 132.8 4.6 2.8 11.9 20 20 A S E +E 60 0C 80 -2,-0.4 40,-0.3 40,-0.2 3,-0.1 -0.552 33.9 169.7 -68.5 136.7 6.1 6.2 11.5 21 21 A V E - 0 0 31 38,-3.2 2,-0.3 1,-0.4 -13,-0.3 0.494 56.4 -27.3-126.9 -14.4 9.6 6.4 13.1 22 22 A G E -E 59 0C 23 37,-1.3 37,-2.9 -15,-0.1 -1,-0.4 -0.969 54.6-116.7 178.9-173.3 11.1 9.7 11.9 23 23 A K E -E 58 0C 121 -2,-0.3 2,-0.4 35,-0.3 -18,-0.3 -0.974 8.4-147.9-154.2 130.1 11.2 12.3 9.2 24 24 A V - 0 0 1 33,-2.3 2,-0.4 -2,-0.3 -20,-0.2 -0.808 21.6-152.3 -95.6 143.5 13.8 13.5 6.7 25 25 A I E -A 3 0A 88 -22,-2.2 -22,-3.1 -2,-0.4 2,-0.5 -0.968 9.8-154.8-125.5 130.6 13.6 17.2 5.7 26 26 A R E > -A 2 0A 39 -2,-0.4 3,-1.9 -24,-0.2 -24,-0.2 -0.850 18.6-139.5-100.3 128.4 14.7 19.0 2.5 27 27 A S T 3 S+ 0 0 77 -26,-2.9 -1,-0.1 -2,-0.5 -25,-0.1 0.837 103.1 46.2 -60.2 -33.0 15.5 22.6 3.1 28 28 A E T 3 S- 0 0 111 -27,-0.4 -1,-0.3 1,-0.3 2,-0.1 0.455 110.1-127.9 -84.5 -4.1 13.8 23.7 -0.2 29 29 A G < - 0 0 33 -3,-1.9 2,-0.4 1,-0.1 -1,-0.3 -0.433 29.2 -80.5 86.7-169.5 10.7 21.5 0.4 30 30 A T + 0 0 45 -2,-0.1 2,-0.4 -3,-0.1 -1,-0.1 -0.910 63.0 146.6-133.9 104.0 9.6 19.0 -2.2 31 31 A E S S+ 0 0 185 -2,-0.4 3,-0.1 -3,-0.1 -3,-0.0 -0.914 89.3 1.0-110.0 134.7 7.6 20.7 -4.8 32 32 A G S S+ 0 0 43 -2,-0.4 50,-0.7 1,-0.2 2,-0.3 0.747 120.5 100.2 61.1 28.1 8.5 18.8 -8.0 33 33 A A E -C 81 0B 4 48,-0.2 2,-0.4 49,-0.1 48,-0.2 -0.942 56.0-148.7-147.5 160.2 10.7 16.4 -6.1 34 34 A K E -C 80 0B 62 46,-2.6 46,-2.7 -2,-0.3 2,-0.2 -0.995 15.2-133.1-134.3 128.2 10.7 12.9 -4.5 35 35 A F E -C 79 0B 12 19,-2.2 2,-0.3 -2,-0.4 44,-0.2 -0.554 26.0-168.5 -68.4 147.1 12.4 11.4 -1.5 36 36 A R E -C 78 0B 99 42,-2.6 42,-2.4 -2,-0.2 2,-0.4 -0.995 4.4-162.6-140.2 133.5 14.1 8.1 -2.2 37 37 A L E +C 77 0B 16 -2,-0.3 2,-0.3 40,-0.2 40,-0.2 -0.903 14.4 167.7-117.0 145.3 15.5 5.7 0.4 38 38 A S E +C 76 0B 18 38,-2.2 38,-2.7 -2,-0.4 2,-0.2 -0.965 20.5 77.1-151.2 163.7 18.0 2.8 -0.2 39 39 A G S >>>S- 0 0 5 -2,-0.3 3,-2.5 36,-0.2 5,-1.8 -0.669 84.1 -27.3 131.6 179.9 20.2 0.4 1.6 40 40 A K B 345S+g 44 0D 106 34,-0.4 34,-0.3 1,-0.3 5,-0.2 -0.576 131.8 36.2 -66.0 122.4 20.1 -2.9 3.5 41 41 A G T 345S+ 0 0 0 3,-2.2 9,-2.2 5,-0.7 8,-1.5 0.187 125.8 41.5 109.4 -13.2 16.6 -2.8 5.1 42 42 A V T <45S- 0 0 25 -3,-2.5 6,-2.3 2,-0.4 -2,-0.2 0.533 133.6 -6.4-126.3 -83.1 15.1 -1.2 2.0 43 43 A D T <5S+ 0 0 88 -4,-1.0 2,-0.3 4,-0.2 -3,-0.2 0.353 125.6 60.1-107.2 2.3 16.2 -2.4 -1.5 44 44 A Q B S- 0 0 38 0, 0.0 -5,-0.7 0, 0.0 3,-0.6 0.402 97.5-165.7 -77.0 126.8 16.6 -7.6 4.3 47 47 A K T 3 + 0 0 135 1,-0.2 -4,-0.2 -4,-0.2 -5,-0.2 -0.471 55.4 18.7 -82.5 151.3 14.3 -5.8 1.9 48 48 A G T 3 S+ 0 0 40 -6,-2.3 -6,-0.2 2,-0.2 -1,-0.2 0.626 77.7 118.3 78.6 13.0 11.2 -3.8 2.7 49 49 A I S < S+ 0 0 8 -8,-1.5 13,-2.2 -3,-0.6 2,-0.3 0.879 77.5 32.7 -77.6 -40.1 11.8 -3.1 6.4 50 50 A F E -F 61 0C 3 -9,-2.2 2,-0.3 11,-0.2 11,-0.2 -0.900 64.9-179.5-120.4 147.9 11.9 0.7 6.0 51 51 A R E -F 60 0C 131 9,-2.1 9,-2.4 -2,-0.3 2,-0.4 -0.952 13.8-148.5-136.0 159.6 10.1 3.1 3.6 52 52 A I E -F 59 0C 24 -2,-0.3 2,-0.4 7,-0.2 7,-0.2 -0.989 22.3-122.5-126.8 141.1 10.0 6.8 3.0 53 53 A N > - 0 0 78 5,-2.3 4,-2.1 -2,-0.4 -18,-0.2 -0.691 20.9-139.4 -76.8 128.0 7.1 8.9 1.8 54 54 A E T 4 S+ 0 0 91 -2,-0.4 -19,-2.2 1,-0.2 -1,-0.1 0.809 96.0 32.7 -59.0 -35.6 8.2 10.7 -1.4 55 55 A I T 4 S+ 0 0 121 -21,-0.2 -1,-0.2 1,-0.1 -25,-0.0 0.886 127.2 31.9 -88.0 -50.1 6.4 13.9 -0.6 56 56 A S T 4 S- 0 0 49 2,-0.1 -2,-0.2 -21,-0.1 3,-0.1 0.634 89.3-129.6 -92.8 -16.3 6.6 14.2 3.2 57 57 A G < + 0 0 0 -4,-2.1 -33,-2.3 1,-0.3 2,-0.2 0.530 49.9 157.9 75.6 7.2 9.9 12.5 4.1 58 58 A D E -E 23 0C 49 -35,-0.2 -5,-2.3 -5,-0.1 2,-0.4 -0.492 31.2-148.2 -67.2 127.7 8.1 10.4 6.7 59 59 A V E -EF 22 52C 0 -37,-2.9 -38,-3.2 -2,-0.2 -37,-1.3 -0.856 18.8-174.1-100.8 130.6 10.1 7.3 7.5 60 60 A S E -EF 20 51C 4 -9,-2.4 -9,-2.1 -2,-0.4 2,-0.4 -0.894 19.5-141.8-125.8 157.0 8.2 4.2 8.4 61 61 A V E -EF 19 50C 0 -42,-2.4 -42,-2.3 -2,-0.3 -11,-0.2 -0.910 6.3-157.5-116.6 147.0 9.0 0.7 9.6 62 62 A T + 0 0 45 -13,-2.2 -45,-0.1 -2,-0.4 -12,-0.1 0.465 67.0 7.6-110.2 -2.1 6.9 -2.3 8.4 63 63 A R S S- 0 0 95 -14,-0.3 -50,-0.2 -44,-0.1 -1,-0.1 -0.969 90.3 -67.1-164.2 169.3 7.5 -5.0 11.1 64 64 A P - 0 0 50 0, 0.0 2,-0.4 0, 0.0 -53,-0.1 -0.390 48.7-135.7 -65.3 150.5 9.0 -5.6 14.5 65 65 A L - 0 0 2 -55,-0.3 -53,-2.8 -2,-0.0 2,-0.7 -0.933 4.4-148.6-114.3 134.9 12.8 -5.4 14.7 66 66 A D >> - 0 0 79 -2,-0.4 4,-2.2 -55,-0.2 3,-1.8 -0.887 4.6-160.2-102.1 109.8 15.0 -7.9 16.6 67 67 A R T 34 S+ 0 0 83 -2,-0.7 -1,-0.1 1,-0.3 30,-0.1 0.803 91.5 57.7 -61.4 -26.8 18.1 -6.0 17.9 68 68 A E T 34 S+ 0 0 131 1,-0.2 -1,-0.3 2,-0.1 3,-0.1 0.437 109.6 45.1 -88.1 0.5 20.0 -9.3 18.2 69 69 A A T <4 S- 0 0 71 -3,-1.8 2,-0.3 1,-0.3 -2,-0.2 0.783 139.0 -4.9 -98.0 -54.7 19.4 -10.0 14.5 70 70 A I < - 0 0 57 -4,-2.2 -1,-0.3 1,-0.1 -2,-0.1 -0.948 62.0-178.6-140.7 119.7 20.3 -6.5 13.2 71 71 A A + 0 0 30 -2,-0.3 26,-2.9 1,-0.2 2,-0.3 0.700 68.7 22.4 -90.1 -24.8 21.0 -3.8 15.7 72 72 A N E - D 0 96B 101 24,-0.2 2,-0.3 -5,-0.1 24,-0.2 -0.997 58.0-158.7-147.6 144.2 21.7 -0.9 13.3 73 73 A Y E - D 0 95B 13 22,-3.0 22,-2.5 -2,-0.3 2,-0.5 -0.919 4.9-159.5-120.8 146.3 20.8 0.1 9.8 74 74 A E E + D 0 94B 139 -2,-0.3 -34,-0.4 -34,-0.3 20,-0.2 -0.918 23.6 179.1-129.7 103.8 22.7 2.6 7.7 75 75 A L E - D 0 93B 1 18,-3.0 18,-2.7 -2,-0.5 2,-0.5 -0.546 25.9-128.4-106.1 165.2 20.5 3.9 4.9 76 76 A E E -CD 38 92B 98 -38,-2.7 -38,-2.2 16,-0.2 2,-0.4 -0.968 22.3-171.7-110.9 130.7 20.9 6.4 2.1 77 77 A V E +CD 37 91B 0 14,-2.6 14,-2.5 -2,-0.5 2,-0.3 -0.989 14.1 158.1-123.4 135.1 18.3 9.1 1.6 78 78 A E E -C 36 0B 16 -42,-2.4 -42,-2.6 -2,-0.4 2,-0.4 -0.867 32.1-126.8-143.3 170.1 18.2 11.5 -1.4 79 79 A V E -CD 35 88B 2 9,-2.6 8,-3.0 -2,-0.3 9,-1.7 -0.994 23.8-174.0-125.0 134.6 15.8 13.7 -3.3 80 80 A T E -CD 34 86B 5 -46,-2.7 -46,-2.6 -2,-0.4 6,-0.2 -0.768 29.2-107.6-113.9 164.1 15.2 13.5 -7.0 81 81 A D E > -C 33 0B 48 4,-2.3 3,-1.6 -2,-0.3 -48,-0.2 -0.210 55.4 -85.0 -71.3-178.1 13.2 15.6 -9.4 82 82 A L T 3 S+ 0 0 107 -50,-0.7 -49,-0.1 1,-0.3 -1,-0.1 0.776 129.9 55.3 -67.1 -22.1 10.1 13.9 -10.8 83 83 A S T 3 S- 0 0 118 2,-0.1 -1,-0.3 0, 0.0 -50,-0.1 0.421 122.4 -99.8 -89.0 -2.2 12.1 12.2 -13.5 84 84 A G S < S+ 0 0 33 -3,-1.6 2,-0.4 1,-0.3 -2,-0.1 0.495 73.2 141.1 97.6 7.2 14.5 10.5 -11.1 85 85 A K - 0 0 141 1,-0.1 -4,-2.3 2,-0.0 -1,-0.3 -0.681 56.9-116.0 -81.4 127.9 17.5 12.9 -11.4 86 86 A I E + D 0 80B 71 -2,-0.4 -6,-0.3 -6,-0.2 3,-0.1 -0.446 42.4 164.5 -65.0 128.9 19.2 13.4 -8.0 87 87 A I E + 0 0 70 -8,-3.0 2,-0.3 1,-0.3 -7,-0.2 0.420 65.8 23.5-121.2 -6.6 19.0 17.0 -6.9 88 88 A D E S- D 0 79B 29 -9,-1.7 -9,-2.6 -62,-0.0 -1,-0.3 -0.948 96.2 -47.4-159.6 137.7 19.9 16.7 -3.2 89 89 A G E - 0 0 33 -2,-0.3 -11,-0.2 1,-0.3 2,-0.2 -0.345 12.3-142.0 78.9-167.3 21.9 14.1 -1.2 90 90 A P E + 0 0 64 0, 0.0 2,-0.3 0, 0.0 -1,-0.3 0.433 45.6 171.3 -72.6 155.4 22.3 11.3 -0.7 91 91 A V E - D 0 77B 50 -14,-2.5 -14,-2.6 -2,-0.2 2,-0.4 -0.909 37.9 -95.1-126.3 161.0 22.9 11.7 3.0 92 92 A R E - D 0 76B 142 -2,-0.3 2,-0.6 -16,-0.2 -16,-0.2 -0.592 30.2-164.1 -80.9 130.0 23.3 9.0 5.7 93 93 A L E - D 0 75B 1 -18,-2.7 -18,-3.0 -2,-0.4 2,-0.4 -0.942 9.1-157.9-116.0 108.6 20.2 7.9 7.7 94 94 A D E - D 0 74B 38 -2,-0.6 -87,-2.9 -20,-0.2 2,-0.5 -0.723 9.1-174.1 -85.4 133.7 21.1 6.0 10.8 95 95 A I E -bD 7 73B 0 -22,-2.5 -22,-3.0 -2,-0.4 2,-0.5 -0.986 6.0-169.2-127.7 118.7 18.4 3.7 12.3 96 96 A S E -bD 8 72B 29 -89,-3.0 -87,-2.7 -2,-0.5 2,-0.5 -0.931 16.0-142.2-111.9 132.1 19.3 2.1 15.6 97 97 A V E -b 9 0B 1 -26,-2.9 2,-0.3 -2,-0.5 -89,-0.0 -0.810 26.9-163.9 -89.4 128.4 17.3 -0.6 17.3 98 98 A I E b 10 0B 62 -89,-2.3 -87,-2.7 -2,-0.5 -31,-0.1 -0.728 360.0 360.0-115.6 156.9 17.3 -0.1 21.0 99 99 A D 0 0 151 -2,-0.3 -1,-0.1 -89,-0.2 -87,-0.0 -0.331 360.0 360.0 -57.7 360.0 16.4 -2.3 23.9