==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 13-OCT-09 3K7Z . COMPND 2 MOLECULE: GENERAL CONTROL PROTEIN GCN4; . SOURCE 2 SYNTHETIC: YES; . AUTHOR J.HOLTON,T.ALBER,TB STRUCTURAL GENOMICS CONSORTIUM (TBSGC) . 91 3 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6312.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 81 89.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 79 86.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 2 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A R > 0 0 102 0, 0.0 4,-1.9 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 -54.1 70.2 26.9 22.1 2 2 A M H > + 0 0 19 2,-0.2 4,-2.7 1,-0.2 5,-0.2 0.968 360.0 45.6 -58.3 -52.7 70.5 28.3 18.5 3 3 A K H > S+ 0 0 74 1,-0.2 4,-2.7 2,-0.2 -1,-0.2 0.864 111.0 54.7 -62.4 -32.8 68.4 25.6 16.8 4 4 A Q H > S+ 0 0 101 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.896 109.3 47.3 -69.7 -38.1 65.7 25.9 19.6 5 5 A L H X S+ 0 0 4 -4,-1.9 4,-2.4 2,-0.2 -2,-0.2 0.982 113.3 48.2 -69.2 -51.4 65.5 29.7 18.8 6 6 A E H X S+ 0 0 52 -4,-2.7 4,-2.2 1,-0.3 -2,-0.2 0.921 111.6 50.0 -51.6 -42.8 65.3 29.0 15.1 7 7 A D H X S+ 0 0 98 -4,-2.7 4,-2.5 1,-0.2 -1,-0.3 0.903 110.4 49.9 -64.5 -47.2 62.6 26.4 15.6 8 8 A K H X S+ 0 0 58 -4,-2.0 4,-2.7 1,-0.2 -1,-0.2 0.836 108.4 53.2 -62.1 -36.0 60.5 28.8 17.8 9 9 A V H X S+ 0 0 6 -4,-2.4 4,-2.6 2,-0.2 -1,-0.2 0.941 110.0 47.1 -61.7 -49.8 60.9 31.5 15.1 10 10 A E H X S+ 0 0 109 -4,-2.2 4,-2.4 2,-0.2 5,-0.2 0.908 110.9 53.1 -58.2 -43.0 59.5 29.1 12.4 11 11 A E H X S+ 0 0 96 -4,-2.5 4,-2.2 1,-0.2 -2,-0.2 0.954 112.6 45.0 -53.0 -55.3 56.7 28.1 14.9 12 12 A L H X S+ 0 0 0 -4,-2.7 4,-3.1 2,-0.2 -2,-0.2 0.896 110.1 52.1 -57.3 -43.5 55.9 31.8 15.3 13 13 A L H X S+ 0 0 0 -4,-2.6 4,-2.5 1,-0.2 -1,-0.2 0.927 110.2 48.6 -67.3 -37.4 56.0 32.7 11.6 14 14 A S H X S+ 0 0 58 -4,-2.4 4,-2.6 1,-0.2 -1,-0.2 0.909 112.4 49.7 -67.9 -47.8 53.6 29.9 10.7 15 15 A K H X S+ 0 0 50 -4,-2.2 4,-2.6 -5,-0.2 -2,-0.2 0.923 111.1 49.6 -49.7 -56.0 51.2 31.0 13.5 16 16 A A H X S+ 0 0 0 -4,-3.1 4,-2.9 2,-0.2 -2,-0.2 0.927 110.0 49.5 -60.0 -33.8 51.4 34.6 12.3 17 17 A Y H X S+ 0 0 88 -4,-2.5 4,-2.4 2,-0.2 -2,-0.2 0.957 110.7 50.9 -68.7 -44.1 50.6 33.6 8.6 18 18 A H H X S+ 0 0 127 -4,-2.6 4,-3.0 2,-0.2 -2,-0.2 0.926 111.9 47.3 -57.9 -38.9 47.7 31.6 9.8 19 19 A L H X S+ 0 0 4 -4,-2.6 4,-3.2 2,-0.2 5,-0.3 0.972 109.3 54.1 -65.8 -39.8 46.4 34.6 11.9 20 20 A E H X S+ 0 0 87 -4,-2.9 4,-1.6 1,-0.2 -1,-0.2 0.902 111.5 44.8 -60.8 -39.4 47.0 36.8 8.8 21 21 A N H X S+ 0 0 97 -4,-2.4 4,-1.9 2,-0.2 -2,-0.2 0.917 112.6 51.1 -78.5 -36.6 44.8 34.4 6.8 22 22 A E H X S+ 0 0 53 -4,-3.0 4,-3.2 1,-0.3 5,-0.2 0.878 107.2 53.8 -64.3 -42.9 42.1 34.1 9.6 23 23 A V H X S+ 0 0 12 -4,-3.2 4,-2.4 1,-0.2 -1,-0.3 0.889 109.5 48.0 -57.0 -53.2 41.9 37.9 9.8 24 24 A A H X S+ 0 0 61 -4,-1.6 4,-1.6 -5,-0.3 -1,-0.2 0.883 111.5 50.9 -51.5 -45.9 41.2 38.1 6.1 25 25 A R H X S+ 0 0 110 -4,-1.9 4,-2.3 1,-0.2 -2,-0.2 0.962 112.7 46.0 -61.5 -47.6 38.6 35.3 6.4 26 26 A L H X S+ 0 0 10 -4,-3.2 4,-2.3 2,-0.2 5,-0.3 0.849 105.7 58.0 -60.1 -46.7 36.8 37.2 9.3 27 27 A K H X S+ 0 0 118 -4,-2.4 4,-1.7 -5,-0.2 -1,-0.2 0.959 110.7 45.6 -49.3 -50.1 36.9 40.7 7.5 28 28 A K H < S+ 0 0 174 -4,-1.6 -2,-0.2 1,-0.2 -1,-0.2 0.923 110.0 52.9 -55.5 -58.7 34.9 39.0 4.7 29 29 A L H < S+ 0 0 88 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.798 107.4 52.1 -52.3 -35.1 32.5 37.2 7.1 30 30 A V H < 0 0 110 -4,-2.3 -1,-0.2 -3,-0.2 -2,-0.2 0.903 360.0 360.0 -71.2 -34.4 31.7 40.6 8.9 31 31 A G < 0 0 98 -4,-1.7 -3,-0.1 -5,-0.3 -2,-0.1 0.406 360.0 360.0 96.0 360.0 30.9 42.1 5.4 32 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 33 1 B R > 0 0 137 0, 0.0 4,-2.3 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -29.5 71.8 38.8 22.7 34 2 B M H > + 0 0 13 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.977 360.0 44.6 -66.5 -43.8 70.9 35.1 22.8 35 3 B K H > S+ 0 0 118 2,-0.2 4,-2.8 1,-0.2 5,-0.3 0.926 109.4 58.3 -63.0 -37.3 68.7 35.6 25.9 36 4 B Q H > S+ 0 0 114 1,-0.2 4,-2.6 2,-0.2 -2,-0.2 0.962 110.6 41.0 -60.9 -47.4 67.2 38.8 24.3 37 5 B L H X S+ 0 0 7 -4,-2.3 4,-2.7 1,-0.2 -1,-0.2 0.890 112.5 53.8 -74.4 -38.1 66.0 36.8 21.2 38 6 B E H X S+ 0 0 69 -4,-2.5 4,-2.0 2,-0.2 -1,-0.2 0.926 111.3 47.5 -56.7 -43.1 64.8 33.8 23.3 39 7 B D H X S+ 0 0 82 -4,-2.8 4,-2.2 -5,-0.2 -2,-0.2 0.963 111.4 51.7 -67.6 -37.2 62.7 36.3 25.4 40 8 B K H X S+ 0 0 77 -4,-2.6 4,-2.4 -5,-0.3 -2,-0.2 0.934 107.9 49.0 -66.1 -46.7 61.4 38.0 22.3 41 9 B V H X S+ 0 0 1 -4,-2.7 4,-2.8 1,-0.2 5,-0.2 0.938 111.7 51.3 -64.8 -36.7 60.1 34.7 20.6 42 10 B E H X S+ 0 0 96 -4,-2.0 4,-2.4 2,-0.2 -1,-0.2 0.921 110.3 49.0 -60.2 -46.5 58.4 33.7 23.9 43 11 B E H X S+ 0 0 76 -4,-2.2 4,-2.3 2,-0.2 -1,-0.2 0.936 113.7 45.7 -56.4 -50.9 56.6 37.1 24.1 44 12 B L H X S+ 0 0 0 -4,-2.4 4,-2.8 2,-0.2 -2,-0.2 0.902 110.6 52.4 -68.4 -35.5 55.5 36.9 20.5 45 13 B L H X S+ 0 0 23 -4,-2.8 4,-2.3 2,-0.2 -2,-0.2 0.916 109.5 51.5 -66.1 -33.6 54.3 33.2 20.9 46 14 B S H X S+ 0 0 60 -4,-2.4 4,-2.2 2,-0.2 5,-0.2 0.939 110.8 47.5 -63.3 -47.3 52.3 34.4 24.0 47 15 B K H X S+ 0 0 77 -4,-2.3 4,-2.3 1,-0.3 -2,-0.2 0.941 110.5 51.1 -60.1 -45.2 50.7 37.2 21.8 48 16 B A H X S+ 0 0 0 -4,-2.8 4,-2.3 1,-0.2 -1,-0.3 0.862 107.4 56.1 -57.1 -50.9 50.0 34.7 19.1 49 17 B Y H X S+ 0 0 121 -4,-2.3 4,-1.7 2,-0.2 3,-0.3 0.970 109.7 42.9 -44.4 -56.8 48.3 32.5 21.7 50 18 B H H X S+ 0 0 109 -4,-2.2 4,-2.5 1,-0.2 -2,-0.2 0.809 112.9 53.6 -64.8 -32.8 45.9 35.3 22.9 51 19 B L H X S+ 0 0 16 -4,-2.3 4,-2.8 -5,-0.2 -1,-0.2 0.898 104.0 53.5 -68.9 -41.9 45.2 36.3 19.3 52 20 B E H X S+ 0 0 70 -4,-2.3 4,-2.3 -3,-0.3 -2,-0.2 0.916 108.9 53.0 -55.7 -43.0 44.2 32.8 18.4 53 21 B N H X S+ 0 0 72 -4,-1.7 4,-2.5 2,-0.2 -2,-0.2 0.967 109.0 47.6 -57.6 -44.5 41.8 33.1 21.4 54 22 B E H X S+ 0 0 82 -4,-2.5 4,-3.2 1,-0.2 5,-0.3 0.946 107.7 55.3 -63.7 -42.9 40.3 36.3 20.0 55 23 B V H X S+ 0 0 5 -4,-2.8 4,-2.4 1,-0.2 -1,-0.2 0.959 108.0 50.1 -54.0 -49.3 39.9 34.7 16.5 56 24 B A H X S+ 0 0 51 -4,-2.3 4,-1.8 1,-0.2 -2,-0.2 0.932 112.3 46.7 -57.3 -45.0 37.9 31.9 18.1 57 25 B R H X S+ 0 0 118 -4,-2.5 4,-2.7 2,-0.2 -2,-0.2 0.900 111.1 51.3 -65.4 -41.8 35.7 34.5 19.9 58 26 B L H X S+ 0 0 48 -4,-3.2 4,-2.5 1,-0.2 5,-0.2 0.922 107.2 53.9 -57.7 -41.7 35.2 36.5 16.8 59 27 B K H X S+ 0 0 72 -4,-2.4 4,-0.7 -5,-0.3 -1,-0.2 0.897 111.1 45.7 -59.1 -42.6 34.1 33.4 14.8 60 28 B K H >< S+ 0 0 173 -4,-1.8 3,-0.5 1,-0.2 -1,-0.2 0.900 112.8 50.5 -67.1 -50.4 31.5 32.7 17.5 61 29 B L H 3< S+ 0 0 119 -4,-2.7 -2,-0.2 1,-0.2 -1,-0.2 0.901 109.1 49.1 -58.0 -36.6 30.3 36.3 17.6 62 30 B V H 3< 0 0 60 -4,-2.5 -1,-0.2 -5,-0.2 -2,-0.2 0.648 360.0 360.0 -88.3 1.8 29.9 36.6 13.8 63 31 B G << 0 0 100 -4,-0.7 -1,-0.1 -3,-0.5 -3,-0.1 0.047 360.0 360.0 58.5 360.0 27.9 33.3 14.0 64 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 65 3 C K > 0 0 163 0, 0.0 4,-2.2 0, 0.0 5,-0.2 0.000 360.0 360.0 360.0 -40.4 39.9 46.5 13.4 66 4 C Q H > + 0 0 127 1,-0.2 4,-2.0 2,-0.2 5,-0.2 0.919 360.0 45.5 -61.7 -44.9 41.7 45.9 16.8 67 5 C L H > S+ 0 0 11 2,-0.2 4,-2.7 1,-0.2 5,-0.3 0.937 109.4 55.4 -64.8 -35.3 42.6 42.3 15.8 68 6 C E H > S+ 0 0 73 1,-0.2 4,-2.7 2,-0.2 -2,-0.2 0.909 109.2 47.1 -61.9 -50.3 43.8 43.4 12.3 69 7 C D H X S+ 0 0 72 -4,-2.2 4,-2.7 2,-0.2 -1,-0.2 0.910 111.8 49.7 -61.7 -38.4 46.2 45.9 13.7 70 8 C K H X S+ 0 0 105 -4,-2.0 4,-3.0 2,-0.2 -2,-0.2 0.930 112.4 46.9 -70.4 -35.3 47.6 43.5 16.3 71 9 C V H X S+ 0 0 4 -4,-2.7 4,-2.5 2,-0.2 5,-0.2 0.929 110.0 54.3 -72.0 -36.8 48.2 40.8 13.7 72 10 C E H X S+ 0 0 114 -4,-2.7 4,-2.2 -5,-0.3 -2,-0.2 0.945 112.5 44.4 -55.4 -48.5 49.8 43.5 11.5 73 11 C E H X S+ 0 0 86 -4,-2.7 4,-2.9 2,-0.2 5,-0.3 0.909 111.0 52.3 -62.6 -47.8 52.1 44.3 14.4 74 12 C L H X S+ 0 0 5 -4,-3.0 4,-3.2 2,-0.2 5,-0.2 0.921 108.9 51.1 -53.4 -46.6 52.8 40.6 15.2 75 13 C L H X S+ 0 0 13 -4,-2.5 4,-2.1 2,-0.2 -2,-0.2 0.953 112.6 45.3 -60.5 -40.7 53.8 40.0 11.5 76 14 C S H X S+ 0 0 81 -4,-2.2 4,-2.6 -5,-0.2 -2,-0.2 0.940 115.3 46.6 -72.6 -41.6 56.2 43.0 11.5 77 15 C K H X S+ 0 0 69 -4,-2.9 4,-2.6 1,-0.2 -2,-0.2 0.910 113.0 49.9 -67.1 -38.0 57.7 42.0 14.9 78 16 C A H X S+ 0 0 0 -4,-3.2 4,-2.6 -5,-0.3 -1,-0.2 0.912 111.0 48.3 -67.7 -39.7 58.1 38.4 13.8 79 17 C Y H X S+ 0 0 76 -4,-2.1 4,-1.9 -5,-0.2 -2,-0.2 0.933 112.4 49.8 -66.6 -44.1 59.8 39.3 10.5 80 18 C H H X S+ 0 0 112 -4,-2.6 4,-2.1 2,-0.2 -2,-0.2 0.882 111.6 48.2 -57.8 -48.9 62.1 41.7 12.4 81 19 C L H X S+ 0 0 4 -4,-2.6 4,-2.6 2,-0.2 5,-0.2 0.943 107.1 56.1 -55.8 -43.0 63.0 38.9 14.9 82 20 C E H X S+ 0 0 70 -4,-2.6 4,-2.1 1,-0.2 -2,-0.2 0.916 108.4 48.2 -55.7 -47.0 63.6 36.4 12.0 83 21 C N H X S+ 0 0 89 -4,-1.9 4,-1.8 2,-0.2 -1,-0.2 0.934 113.0 47.2 -62.4 -41.1 66.2 38.8 10.5 84 22 C E H X S+ 0 0 28 -4,-2.1 4,-2.6 1,-0.2 -1,-0.2 0.840 111.3 51.5 -68.0 -39.8 67.9 39.3 13.9 85 23 C V H X S+ 0 0 7 -4,-2.6 4,-2.4 2,-0.2 -1,-0.2 0.905 108.0 51.5 -60.9 -44.1 68.0 35.5 14.6 86 24 C A H X S+ 0 0 57 -4,-2.1 4,-1.2 -5,-0.2 -2,-0.2 0.863 111.5 48.5 -64.6 -33.9 69.5 34.9 11.2 87 25 C R H X S+ 0 0 156 -4,-1.8 4,-1.2 2,-0.2 3,-0.3 0.918 109.7 50.2 -71.7 -48.8 72.2 37.5 12.1 88 26 C L H >X S+ 0 0 13 -4,-2.6 4,-2.6 1,-0.2 3,-0.9 0.953 104.7 61.4 -53.2 -37.9 72.9 35.9 15.4 89 27 C K H 3X S+ 0 0 74 -4,-2.4 4,-3.5 1,-0.3 -1,-0.2 0.877 98.1 55.7 -57.2 -40.1 73.2 32.6 13.6 90 28 C K H 3< S+ 0 0 182 -4,-1.2 -1,-0.3 -3,-0.3 -2,-0.2 0.872 111.3 44.7 -62.9 -37.6 76.1 33.9 11.6 91 29 C L H << S+ 0 0 144 -4,-1.2 -2,-0.2 -3,-0.9 -1,-0.2 0.896 123.5 33.3 -71.5 -47.8 77.9 34.7 14.9 92 30 C V H < 0 0 78 -4,-2.6 -2,-0.2 1,-0.1 -3,-0.2 0.859 360.0 360.0 -82.7 -34.8 77.1 31.4 16.6 93 31 C G < 0 0 69 -4,-3.5 -1,-0.1 -5,-0.3 -2,-0.1 -0.421 360.0 360.0 74.5 360.0 77.1 28.8 13.8