==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION 09-SEP-08 2K8G . COMPND 2 MOLECULE: POLYADENYLATE-BINDING PROTEIN 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR I.BARSUKOV,S.PARNHAM . 95 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6012.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 63.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 22.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 12 12.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 16.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 88 A G 0 0 141 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-163.6 10.2 12.5 13.9 2 89 A A - 0 0 105 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.647 360.0 -36.5-119.8 -65.3 7.7 10.2 12.5 3 90 A D > - 0 0 50 1,-0.0 3,-0.7 3,-0.0 0, 0.0 -0.748 33.7-163.5-170.1 117.4 9.4 7.4 10.5 4 91 A P T 3 S+ 0 0 94 0, 0.0 -1,-0.0 0, 0.0 6,-0.0 0.505 84.5 82.6 -78.5 -4.2 12.6 7.5 8.3 5 92 A S T 3 + 0 0 39 1,-0.2 2,-2.3 5,-0.1 5,-0.3 0.266 53.5 116.4 -84.8 13.3 11.5 4.2 6.8 6 93 A L < + 0 0 113 -3,-0.7 2,-0.2 3,-0.1 -1,-0.2 -0.307 64.0 71.6 -80.4 56.1 9.1 6.1 4.4 7 94 A R S S- 0 0 98 -2,-2.3 3,-0.3 81,-0.0 79,-0.1 -0.459 109.5 -78.5-137.4-150.5 11.2 4.8 1.4 8 95 A K S S+ 0 0 48 85,-0.3 87,-2.6 -2,-0.2 3,-0.4 0.364 122.9 69.2 -99.3 1.1 11.6 1.5 -0.3 9 96 A S + 0 0 32 85,-0.3 -1,-0.1 84,-0.3 -3,-0.1 0.111 68.0 91.4-105.8 19.7 14.0 0.6 2.5 10 97 A G S S- 0 0 13 -3,-0.3 -1,-0.2 -5,-0.3 -5,-0.1 0.363 99.9-114.0 -89.1 6.2 11.3 0.3 5.2 11 98 A V S S+ 0 0 62 -3,-0.4 47,-0.3 2,-0.1 -2,-0.1 0.792 92.8 20.7 60.3 121.1 11.0 -3.4 4.3 12 99 A G S S+ 0 0 0 1,-0.2 46,-1.5 -4,-0.2 2,-0.5 0.801 83.6 164.7 72.2 25.6 7.8 -4.6 2.8 13 100 A N E +A 57 0A 1 -5,-0.3 73,-2.0 44,-0.2 2,-0.3 -0.680 5.8 165.0 -85.6 123.9 6.9 -1.1 1.6 14 101 A I E -AB 56 85A 0 42,-2.2 42,-2.1 -2,-0.5 2,-0.4 -0.932 26.6-139.4-135.7 159.9 4.1 -1.1 -1.0 15 102 A F E -AB 55 84A 58 69,-2.4 69,-2.4 -2,-0.3 2,-0.4 -0.953 11.1-155.9-124.1 141.4 1.7 1.5 -2.4 16 103 A I E -AB 54 83A 0 38,-3.6 38,-2.4 -2,-0.4 2,-0.3 -0.937 8.3-164.6-118.0 137.6 -1.9 1.0 -3.3 17 104 A K E +AB 53 82A 105 65,-2.3 65,-2.3 -2,-0.4 36,-0.3 -0.889 60.4 25.7-120.7 151.6 -3.9 3.0 -5.8 18 105 A N S S+ 0 0 72 34,-2.9 35,-0.2 -2,-0.3 -1,-0.2 0.942 73.3 169.3 69.8 54.4 -7.7 3.5 -6.5 19 106 A L - 0 0 0 -3,-0.2 2,-0.2 62,-0.1 -1,-0.1 -0.508 34.4-107.2 -91.6 162.9 -9.1 2.8 -3.1 20 107 A D > - 0 0 20 56,-0.3 3,-1.7 59,-0.2 32,-0.1 -0.559 23.7-118.9 -87.4 155.7 -12.7 3.4 -1.9 21 108 A K T 3 S+ 0 0 133 1,-0.3 -1,-0.1 -2,-0.2 30,-0.1 0.810 113.2 63.6 -62.2 -31.4 -13.7 6.2 0.5 22 109 A S T 3 S+ 0 0 68 28,-0.1 2,-0.6 2,-0.0 -1,-0.3 0.521 80.8 104.7 -72.3 -4.6 -14.9 3.6 3.0 23 110 A I < + 0 0 6 -3,-1.7 2,-0.2 53,-0.1 -4,-0.1 -0.706 47.9 172.7 -84.6 118.4 -11.3 2.3 3.2 24 111 A D > - 0 0 96 -2,-0.6 4,-2.7 26,-0.0 5,-0.2 -0.500 52.1 -91.8-108.7-175.3 -9.6 3.3 6.5 25 112 A N H > S+ 0 0 55 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.867 131.1 50.7 -67.7 -32.5 -6.3 2.3 7.9 26 113 A K H > S+ 0 0 128 2,-0.2 4,-4.0 1,-0.2 -1,-0.2 0.920 110.0 48.1 -65.7 -48.7 -8.2 -0.4 9.7 27 114 A A H > S+ 0 0 23 2,-0.2 4,-1.7 1,-0.2 -2,-0.2 0.898 114.9 44.9 -62.4 -43.0 -9.8 -1.5 6.5 28 115 A L H X S+ 0 0 0 -4,-2.7 4,-2.8 2,-0.2 5,-0.3 0.945 117.5 45.1 -65.7 -47.8 -6.5 -1.6 4.6 29 116 A Y H X S+ 0 0 83 -4,-2.8 4,-3.0 1,-0.2 5,-0.2 0.932 108.7 57.3 -59.3 -46.3 -4.8 -3.3 7.6 30 117 A D H < S+ 0 0 109 -4,-4.0 4,-0.3 1,-0.2 -1,-0.2 0.863 115.5 36.1 -56.8 -39.8 -7.7 -5.7 8.0 31 118 A T H >< S+ 0 0 41 -4,-1.7 3,-0.9 -5,-0.2 -2,-0.2 0.959 123.1 39.3 -77.7 -53.8 -7.3 -6.9 4.4 32 119 A F H >X S+ 0 0 0 -4,-2.8 3,-2.4 1,-0.2 4,-0.8 0.779 100.4 73.7 -71.8 -28.1 -3.5 -6.8 3.9 33 120 A S T 3< S+ 0 0 33 -4,-3.0 3,-0.4 -5,-0.3 -1,-0.2 0.781 82.3 71.7 -57.7 -28.9 -2.7 -8.1 7.4 34 121 A A T <4 S+ 0 0 88 -3,-0.9 -1,-0.3 -4,-0.3 -2,-0.2 0.743 99.3 48.3 -57.3 -22.9 -3.9 -11.6 6.2 35 122 A F T <4 S- 0 0 26 -3,-2.4 2,-0.3 1,-0.4 -1,-0.2 0.734 133.1 -42.6 -89.8 -26.2 -0.7 -11.6 4.1 36 123 A G S < S- 0 0 16 -4,-0.8 -1,-0.4 -3,-0.4 2,-0.1 -0.940 74.5 -60.4 172.9 169.8 1.5 -10.5 7.0 37 124 A N - 0 0 60 -2,-0.3 22,-3.8 -3,-0.1 23,-0.5 -0.420 47.5-145.3 -71.0 143.6 1.8 -8.2 10.0 38 125 A I B -D 58 0B 12 20,-0.3 20,-0.2 1,-0.1 3,-0.2 -0.930 18.6-174.5-114.8 134.9 1.8 -4.5 9.3 39 126 A L S S+ 0 0 85 18,-2.9 2,-0.2 -2,-0.4 19,-0.1 0.803 81.8 5.0 -93.0 -36.4 3.8 -1.9 11.2 40 127 A S + 0 0 68 17,-1.0 17,-0.5 2,-0.0 2,-0.3 -0.748 66.6 170.8-156.2 97.6 2.3 1.1 9.5 41 128 A C - 0 0 25 15,-0.2 2,-0.3 -2,-0.2 15,-0.2 -0.815 12.4-171.2-103.8 153.5 -0.5 1.2 6.9 42 129 A K E -C 55 0A 95 13,-2.7 13,-2.8 -2,-0.3 2,-0.6 -0.985 21.1-164.8-150.6 132.4 -2.1 4.4 5.7 43 130 A V E -C 54 0A 3 -2,-0.3 2,-0.7 11,-0.2 11,-0.2 -0.968 25.7-140.8-114.3 110.3 -5.1 5.4 3.7 44 131 A V E -C 53 0A 35 9,-1.6 7,-3.2 -2,-0.6 9,-0.6 -0.622 27.0-153.9 -78.7 114.5 -4.7 9.0 2.7 45 132 A C - 0 0 77 -2,-0.7 5,-0.3 5,-0.3 2,-0.1 -0.731 13.3-154.2-105.8 135.0 -8.2 10.3 3.0 46 133 A D > - 0 0 51 -2,-0.4 3,-1.2 1,-0.1 5,-0.1 -0.413 45.1 -91.8 -87.3 174.5 -9.9 13.2 1.3 47 134 A E T 3 S+ 0 0 190 1,-0.3 -1,-0.1 -2,-0.1 4,-0.0 0.814 128.7 51.2 -55.1 -31.9 -12.9 15.1 2.8 48 135 A N T 3 S- 0 0 112 2,-0.1 -1,-0.3 0, 0.0 -27,-0.1 0.620 136.9 -76.3 -86.2 -12.3 -15.3 12.7 1.0 49 136 A G S < S+ 0 0 20 -3,-1.2 2,-0.3 -27,-0.0 -2,-0.1 -0.149 98.9 11.2 151.2 -50.2 -13.5 9.6 2.3 50 137 A S - 0 0 10 -5,-0.3 -5,-0.3 -31,-0.1 -29,-0.1 -0.987 49.6-135.4-161.0 146.0 -10.2 8.9 0.5 51 138 A K - 0 0 121 -7,-3.2 -6,-0.2 -2,-0.3 -33,-0.1 0.619 65.0-102.0 -78.2 -13.0 -7.8 10.5 -1.9 52 139 A G S S+ 0 0 13 -8,-0.5 -34,-2.9 1,-0.3 2,-0.3 0.701 89.7 75.6 101.7 22.8 -7.7 7.2 -3.7 53 140 A Y E +AC 17 44A 75 -9,-0.6 -9,-1.6 -36,-0.3 -2,-0.3 -0.985 46.7 179.8-161.2 153.9 -4.4 5.7 -2.6 54 141 A G E -AC 16 43A 0 -38,-2.4 -38,-3.6 -2,-0.3 2,-0.3 -0.903 15.5-135.7-148.3 174.1 -2.8 4.0 0.4 55 142 A F E -AC 15 42A 62 -13,-2.8 -13,-2.7 -2,-0.3 2,-0.4 -0.992 7.6-154.0-139.9 142.6 0.5 2.5 1.7 56 143 A V E -A 14 0A 1 -42,-2.1 -42,-2.2 -2,-0.3 2,-0.6 -0.971 4.0-162.6-118.3 134.0 1.5 -0.6 3.6 57 144 A H E -A 13 0A 16 -17,-0.5 -18,-2.9 -2,-0.4 -17,-1.0 -0.940 23.1-155.1-106.4 106.6 4.5 -1.2 5.8 58 145 A F B -D 38 0B 0 -46,-1.5 -20,-0.3 -2,-0.6 -21,-0.1 -0.626 19.3-139.1 -89.3 139.8 4.9 -4.9 6.1 59 146 A E S S+ 0 0 105 -22,-3.8 2,-0.4 -2,-0.3 -1,-0.1 0.916 94.5 38.5 -52.5 -48.7 6.6 -6.6 9.1 60 147 A T S > S- 0 0 52 -23,-0.5 4,-1.1 1,-0.1 -1,-0.1 -0.849 76.4-136.4-111.8 144.5 8.1 -9.0 6.7 61 148 A Q H > S+ 0 0 37 -2,-0.4 4,-1.4 1,-0.2 3,-0.3 0.882 105.9 53.8 -61.9 -40.3 9.5 -8.4 3.2 62 149 A E H > S+ 0 0 106 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.848 101.3 58.4 -67.7 -35.2 7.8 -11.5 1.8 63 150 A A H > S+ 0 0 1 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.860 103.6 54.2 -63.0 -34.8 4.4 -10.6 3.1 64 151 A A H X S+ 0 0 0 -4,-1.1 4,-2.2 -3,-0.3 -1,-0.2 0.912 105.2 51.7 -64.0 -44.7 4.6 -7.4 1.0 65 152 A E H X S+ 0 0 110 -4,-1.4 4,-2.0 1,-0.2 -1,-0.2 0.875 109.9 50.6 -62.1 -37.3 5.3 -9.3 -2.1 66 153 A R H X S+ 0 0 117 -4,-1.9 4,-3.2 2,-0.2 5,-0.3 0.926 108.1 52.1 -62.5 -47.1 2.3 -11.5 -1.4 67 154 A A H X>S+ 0 0 0 -4,-2.3 4,-2.6 1,-0.2 5,-0.5 0.881 108.0 52.7 -58.7 -39.8 0.1 -8.4 -0.9 68 155 A I H X5S+ 0 0 31 -4,-2.2 4,-1.5 2,-0.2 15,-0.3 0.961 117.0 35.9 -61.2 -53.8 1.3 -7.0 -4.3 69 156 A E H <5S+ 0 0 149 -4,-2.0 -2,-0.2 1,-0.2 -1,-0.2 0.923 123.8 43.1 -64.7 -45.0 0.4 -10.2 -6.2 70 157 A K H <5S+ 0 0 114 -4,-3.2 -3,-0.2 -5,-0.2 -2,-0.2 0.864 122.0 33.6 -75.5 -38.9 -2.7 -11.0 -4.2 71 158 A M H ><5S+ 0 0 6 -4,-2.6 3,-1.9 -5,-0.3 10,-0.3 0.752 89.8 101.8 -93.5 -26.2 -4.3 -7.5 -3.9 72 159 A N T 3< S-E 79 0C 14 3,-3.6 3,-1.5 -2,-0.6 2,-0.6 -0.894 76.5 -40.6-106.4 100.2 -11.9 -3.4 -2.3 77 164 A N T 3 S- 0 0 115 -2,-0.8 3,-0.1 1,-0.3 -2,-0.1 -0.020 133.1 -26.9 77.7 -28.8 -15.5 -2.7 -1.3 78 165 A D T 3 S+ 0 0 111 -2,-0.6 2,-0.4 1,-0.3 -1,-0.3 0.211 122.0 83.1 174.4 -23.8 -16.2 -1.5 -4.8 79 166 A R E < S-E 76 0C 104 -3,-1.5 -3,-3.6 0, 0.0 2,-0.5 -0.880 71.6-125.3-116.0 134.9 -13.0 -0.2 -6.3 80 167 A K E -E 75 0C 129 -2,-0.4 2,-0.3 -5,-0.3 -5,-0.3 -0.627 32.4-149.6 -76.9 123.8 -10.2 -2.2 -8.0 81 168 A V E -E 74 0C 2 -7,-2.9 -8,-3.1 -2,-0.5 -7,-0.7 -0.706 7.7-143.8-103.1 146.6 -6.9 -1.4 -6.2 82 169 A F E -B 17 0A 95 -65,-2.3 -65,-2.3 -2,-0.3 2,-0.5 -0.940 17.9-171.8-107.5 119.3 -3.5 -1.4 -7.6 83 170 A V E +B 16 0A 1 -2,-0.6 2,-0.3 -15,-0.3 -67,-0.2 -0.948 19.1 145.2-114.8 128.0 -0.7 -2.6 -5.3 84 171 A G E -B 15 0A 10 -69,-2.4 -69,-2.4 -2,-0.5 2,-0.2 -0.870 51.2 -57.4-148.6-177.4 2.9 -2.3 -6.2 85 172 A R E -B 14 0A 69 -2,-0.3 2,-1.4 -71,-0.2 -71,-0.2 -0.472 52.3-118.9 -73.0 133.4 6.4 -1.7 -5.0 86 173 A F - 0 0 41 -73,-2.0 2,-1.1 -2,-0.2 3,-0.1 -0.568 33.7-179.3 -78.2 91.0 6.9 1.5 -3.1 87 174 A K - 0 0 152 -2,-1.4 -1,-0.1 1,-0.2 7,-0.0 -0.808 3.2-175.5 -92.5 96.5 9.4 3.4 -5.2 88 175 A S - 0 0 46 -2,-1.1 -1,-0.2 3,-0.0 -81,-0.0 0.887 59.6 -67.4 -61.8 -42.0 9.8 6.6 -3.1 89 176 A R S S- 0 0 178 -3,-0.1 -2,-0.0 2,-0.1 -82,-0.0 -0.131 88.5 -35.5-170.8 -82.9 12.2 8.2 -5.6 90 177 A K + 0 0 171 0, 0.0 2,-0.3 0, 0.0 -3,-0.0 -0.420 69.2 158.9-169.7 72.8 15.7 7.0 -6.4 91 178 A E - 0 0 36 1,-0.1 3,-0.1 2,-0.0 -2,-0.1 -0.801 39.0-147.9-110.1 148.8 17.6 5.6 -3.4 92 179 A R S S+ 0 0 228 -2,-0.3 2,-1.0 1,-0.2 -1,-0.1 0.868 93.9 64.8 -76.3 -39.5 20.5 3.3 -3.2 93 180 A E S S+ 0 0 135 2,-0.0 -85,-0.3 -84,-0.0 2,-0.3 -0.761 77.5 118.9 -88.5 101.5 19.3 1.8 0.1 94 181 A A 0 0 44 -2,-1.0 -85,-0.3 -86,-0.1 -7,-0.0 -0.951 360.0 360.0-164.4 141.8 16.0 0.1 -0.9 95 182 A E 0 0 123 -87,-2.6 -86,-0.2 -2,-0.3 -87,-0.0 0.430 360.0 360.0-125.7 360.0 14.5 -3.4 -0.9