==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=6-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 28-OCT-01 1K99 . COMPND 2 MOLECULE: UPSTREAM BINDING FACTOR 1; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.XU,W.YANG,J.WU,Y.SHI . 91 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8212.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 64.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 15.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 39 42.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 219 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 30.1 -15.5 14.2 18.8 2 2 A K - 0 0 141 84,-0.1 2,-0.3 2,-0.0 82,-0.0 -0.911 360.0-135.2-170.1 141.1 -12.9 14.2 16.1 3 3 A K + 0 0 174 -2,-0.3 2,-0.3 84,-0.1 82,-0.1 -0.707 28.5 159.2-101.9 153.5 -12.3 12.6 12.7 4 4 A L - 0 0 29 -2,-0.3 85,-0.9 80,-0.1 84,-0.3 -0.887 11.2-178.0-172.3 139.5 -9.0 11.0 11.4 5 5 A K - 0 0 124 -2,-0.3 85,-0.1 83,-0.2 0, 0.0 -0.363 53.3 -73.6-122.4-158.2 -7.9 8.6 8.7 6 6 A K S S+ 0 0 121 1,-0.2 6,-1.6 -2,-0.1 81,-0.0 0.067 107.8 87.7 -92.3 24.6 -4.6 7.0 7.6 7 7 A H S S+ 0 0 68 4,-0.2 -1,-0.2 5,-0.1 2,-0.2 0.935 78.4 56.2 -86.0 -56.4 -3.4 10.3 6.1 8 8 A P S S+ 0 0 21 0, 0.0 71,-0.1 0, 0.0 68,-0.1 -0.485 104.5 21.8 -80.0 148.9 -1.7 12.0 9.0 9 9 A D S S- 0 0 65 67,-0.2 67,-0.0 -2,-0.2 71,-0.0 0.955 137.8 -2.8 59.8 93.1 1.1 10.4 11.0 10 10 A F S S- 0 0 145 66,-0.2 2,-0.1 1,-0.1 62,-0.0 0.993 88.5-139.7 59.5 78.7 2.7 7.7 8.7 11 11 A P - 0 0 1 0, 0.0 2,-0.3 0, 0.0 -4,-0.2 -0.428 14.4-162.9 -70.9 140.6 0.5 7.9 5.6 12 12 A K + 0 0 119 -6,-1.6 -6,-0.1 1,-0.1 -5,-0.1 -0.586 38.5 134.7-124.6 68.9 -0.5 4.6 3.9 13 13 A K + 0 0 133 -2,-0.3 -1,-0.1 -6,-0.1 -6,-0.0 0.938 52.0 78.3 -80.0 -52.2 -1.7 5.5 0.4 14 14 A P S S- 0 0 23 0, 0.0 2,-0.2 0, 0.0 50,-0.1 0.148 85.7-103.0 -49.3 173.9 0.2 2.9 -1.7 15 15 A L - 0 0 79 48,-0.1 53,-0.1 1,-0.0 -2,-0.1 -0.583 28.2-115.0-101.4 165.4 -1.0 -0.7 -1.9 16 16 A T >> - 0 0 47 -2,-0.2 4,-2.6 1,-0.1 3,-1.0 -0.686 26.7-110.6-100.1 154.6 0.3 -3.8 -0.1 17 17 A P H 3> S+ 0 0 10 0, 0.0 4,-0.6 0, 0.0 5,-0.1 0.861 123.3 50.2 -47.9 -40.4 2.0 -6.9 -1.8 18 18 A Y H 3> S+ 0 0 58 2,-0.2 4,-2.9 1,-0.2 5,-0.3 0.830 110.3 51.5 -68.6 -31.5 -1.1 -8.9 -0.8 19 19 A F H <>>S+ 0 0 96 -3,-1.0 4,-2.2 2,-0.2 5,-0.7 0.966 109.3 46.2 -69.3 -53.9 -3.3 -6.2 -2.4 20 20 A R H <5S+ 0 0 65 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.626 120.9 43.8 -63.6 -11.7 -1.4 -6.1 -5.7 21 21 A F H X5S+ 0 0 24 -4,-0.6 4,-1.3 -5,-0.4 -2,-0.2 0.772 121.4 35.8-100.1 -38.0 -1.7 -9.9 -5.5 22 22 A F H X5S+ 0 0 41 -4,-2.9 4,-2.1 2,-0.2 -3,-0.2 0.965 121.0 43.4 -79.1 -61.1 -5.3 -10.2 -4.4 23 23 A M H <5S+ 0 0 115 -4,-2.2 4,-0.4 -5,-0.3 -3,-0.2 0.753 115.9 53.0 -56.9 -27.3 -6.9 -7.3 -6.3 24 24 A E H 4X S+ 0 0 44 -4,-1.3 3,-1.5 1,-0.2 4,-0.6 0.435 94.2 98.5 -98.1 0.0 -5.9 -11.9 -9.5 26 26 A R H >X S+ 0 0 26 -4,-2.1 4,-2.5 1,-0.3 3,-1.9 0.874 77.8 61.8 -52.7 -37.1 -9.2 -11.3 -7.7 27 27 A A H 3> S+ 0 0 68 -4,-0.4 4,-1.2 -3,-0.3 -1,-0.3 0.856 94.6 61.7 -56.3 -35.8 -10.7 -11.3 -11.2 28 28 A K H <4 S+ 0 0 111 -3,-1.5 -1,-0.3 1,-0.2 -2,-0.2 0.721 112.2 37.4 -63.8 -22.0 -9.5 -14.8 -11.5 29 29 A Y H < + 0 0 11 -4,-1.5 3,-0.9 1,-0.2 -1,-0.2 -0.460 51.1 137.7-115.3 59.6 -16.6 -18.3 -8.0 34 34 A P T 3 S+ 0 0 120 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.793 80.0 43.7 -72.1 -29.0 -20.1 -18.3 -9.6 35 35 A E T 3 S+ 0 0 195 -3,-0.2 2,-0.1 2,-0.0 -2,-0.1 0.140 117.5 53.0-101.6 18.3 -21.5 -20.5 -6.9 36 36 A M S < S- 0 0 80 -3,-0.9 -3,-0.1 1,-0.1 -6,-0.0 -0.303 73.0-134.2-126.5-150.4 -19.8 -18.4 -4.2 37 37 A S - 0 0 85 -2,-0.1 -1,-0.1 0, 0.0 -4,-0.1 0.483 57.3 -78.0-139.0 -57.9 -19.5 -14.7 -3.2 38 38 A N S > S+ 0 0 66 0, 0.0 4,-2.6 0, 0.0 5,-0.1 0.128 112.7 81.6 169.8 -24.1 -15.9 -13.6 -2.4 39 39 A L H > S+ 0 0 140 2,-0.2 4,-1.9 1,-0.2 5,-0.1 0.876 93.1 53.1 -68.7 -37.3 -15.2 -15.0 1.1 40 40 A D H > S+ 0 0 84 2,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.967 114.4 39.7 -61.3 -54.8 -14.4 -18.4 -0.3 41 41 A L H >> S+ 0 0 0 1,-0.2 4,-1.9 2,-0.2 3,-0.5 0.915 110.3 59.8 -61.4 -45.2 -11.9 -17.0 -2.8 42 42 A T H 3X S+ 0 0 52 -4,-2.6 4,-1.1 1,-0.3 -1,-0.2 0.886 103.3 52.2 -50.9 -42.5 -10.5 -14.5 -0.3 43 43 A K H 3X S+ 0 0 119 -4,-1.9 4,-0.9 1,-0.2 -1,-0.3 0.867 105.9 55.7 -62.4 -37.0 -9.6 -17.4 2.0 44 44 A I H XX S+ 0 0 46 -4,-1.2 4,-1.8 -3,-0.5 3,-0.7 0.911 107.4 47.3 -61.9 -45.4 -7.8 -19.1 -0.9 45 45 A L H 3X S+ 0 0 0 -4,-1.9 4,-1.5 1,-0.2 -1,-0.2 0.697 107.4 58.5 -71.0 -19.4 -5.6 -16.0 -1.4 46 46 A S H 3X S+ 0 0 50 -4,-1.1 4,-0.6 -5,-0.3 -1,-0.2 0.702 108.5 45.2 -82.1 -20.4 -4.9 -15.9 2.3 47 47 A K H S+ 0 0 130 -2,-0.2 4,-1.1 -4,-0.2 -2,-0.1 0.592 98.6 112.3 58.9 8.5 9.0 -14.9 0.8 55 55 A K T 4 S+ 0 0 135 2,-0.2 -1,-0.1 1,-0.1 4,-0.1 0.841 87.5 26.7 -77.8 -33.6 11.0 -15.7 -2.4 56 56 A K T >> S+ 0 0 109 2,-0.1 4,-1.2 1,-0.1 3,-1.1 0.704 114.8 64.4 -98.1 -26.7 8.4 -14.0 -4.6 57 57 A K H 3>>S+ 0 0 17 1,-0.3 4,-3.7 2,-0.2 5,-0.6 0.887 86.3 72.0 -64.2 -38.5 7.1 -11.6 -2.0 58 58 A M H 3X5S+ 0 0 133 -4,-1.1 4,-0.8 1,-0.3 -1,-0.3 0.794 101.3 47.7 -46.6 -28.3 10.5 -9.9 -1.9 59 59 A K H <>5S+ 0 0 107 -3,-1.1 4,-0.7 2,-0.2 -1,-0.3 0.923 114.8 42.4 -78.9 -48.6 9.4 -8.6 -5.3 60 60 A Y H >X5S+ 0 0 28 -4,-1.2 4,-1.9 2,-0.2 3,-1.3 0.952 116.4 47.1 -63.2 -51.6 6.0 -7.5 -4.2 61 61 A I H 3X5S+ 0 0 47 -4,-3.7 4,-2.7 1,-0.3 5,-0.3 0.856 109.5 55.7 -59.6 -33.1 7.2 -5.9 -0.9 62 62 A Q H 3XX S+ 0 0 84 -4,-3.8 4,-2.8 2,-0.2 3,-0.6 0.990 113.2 39.8 -71.5 -64.7 6.0 8.8 -1.3 72 72 A E H 3X S+ 0 0 42 -4,-1.3 4,-1.3 -5,-0.3 -1,-0.2 0.719 101.9 80.9 -58.3 -20.8 6.2 9.1 2.5 73 73 A R H 3< S+ 0 0 162 -4,-0.8 -1,-0.2 1,-0.2 -2,-0.2 0.960 119.4 0.5 -49.7 -63.1 9.6 10.8 1.9 74 74 A N H X< S+ 0 0 121 -4,-0.9 3,-0.6 -3,-0.6 -2,-0.2 0.685 132.3 62.5-100.1 -25.6 8.2 14.2 1.1 75 75 A L H >< S+ 0 0 55 -4,-2.8 3,-1.6 -5,-0.3 -3,-0.2 0.893 96.3 58.6 -67.5 -41.0 4.5 13.3 1.5 76 76 A A G >< S+ 0 0 21 -4,-1.3 3,-3.5 -5,-0.4 -1,-0.2 0.666 79.9 91.4 -63.1 -15.8 5.0 12.5 5.2 77 77 A R G X S+ 0 0 198 -3,-0.6 3,-0.9 1,-0.3 -1,-0.3 0.769 78.3 62.4 -50.7 -26.4 6.2 16.0 5.7 78 78 A F G X S+ 0 0 77 -3,-1.6 3,-1.0 1,-0.2 -1,-0.3 0.440 76.2 91.2 -80.2 0.3 2.6 16.9 6.4 79 79 A R G < + 0 0 118 -3,-3.5 -1,-0.2 1,-0.2 -2,-0.2 0.522 51.1 104.7 -72.8 -4.3 2.8 14.6 9.5 80 80 A E G < + 0 0 161 -3,-0.9 2,-1.1 -4,-0.2 -1,-0.2 0.778 47.0 109.9 -46.8 -28.6 3.8 17.6 11.5 81 81 A D < + 0 0 97 -3,-1.0 -1,-0.1 1,-0.2 -3,-0.0 -0.313 45.7 176.9 -54.9 92.1 0.3 17.6 12.9 82 82 A H + 0 0 161 -2,-1.1 2,-0.5 1,-0.1 -1,-0.2 0.971 57.1 79.1 -64.8 -56.5 1.1 16.4 16.4 83 83 A P + 0 0 109 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.390 54.4 145.3 -59.7 109.6 -2.5 16.6 17.8 84 84 A D - 0 0 51 -2,-0.5 3,-0.3 -80,-0.0 2,-0.3 -0.650 30.5-160.9-151.8 87.8 -4.2 13.4 16.6 85 85 A L - 0 0 103 1,-0.2 3,-0.3 -2,-0.2 -83,-0.0 -0.542 69.6 -23.4 -74.4 131.8 -6.7 11.7 18.9 86 86 A I S S- 0 0 109 -2,-0.3 2,-1.3 1,-0.2 -1,-0.2 0.834 71.4-142.9 28.7 94.2 -7.4 8.0 18.1 87 87 A Q + 0 0 86 -3,-0.3 -1,-0.2 1,-0.1 -82,-0.1 -0.671 63.7 98.2 -85.5 92.1 -6.5 7.7 14.4 88 88 A N + 0 0 74 -2,-1.3 2,-0.2 -84,-0.3 -83,-0.2 -0.362 29.0 163.2-177.1 87.1 -9.1 5.3 13.0 89 89 A A + 0 0 52 -85,-0.9 -83,-0.1 1,-0.1 -84,-0.1 -0.368 39.5 118.7-107.5 51.9 -12.2 6.6 11.2 90 90 A K 0 0 150 1,-0.4 -1,-0.1 -2,-0.2 -85,-0.0 -0.172 360.0 360.0-107.6 38.1 -13.2 3.3 9.5 91 91 A K 0 0 247 -3,-0.1 -1,-0.4 0, 0.0 0, 0.0 0.149 360.0 360.0 60.4 360.0 -16.6 3.0 11.2