==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION 19-OCT-08 2K9L . COMPND 2 MOLECULE: RNA POLYMERASE SIGMA FACTOR RPON; . SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; . AUTHOR E.HONG,D.WEMMER . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5815.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 56.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 6.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 36 47.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 60 A K 0 0 247 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 112.4 2.1 -0.0 -1.2 2 61 A E + 0 0 195 2,-0.1 0, 0.0 0, 0.0 0, 0.0 0.935 360.0 46.9 -87.1 -74.7 1.1 -2.5 -3.9 3 62 A T S S- 0 0 124 1,-0.1 0, 0.0 0, 0.0 0, 0.0 -0.135 102.8 -78.7 -65.1 165.6 3.4 -2.1 -6.9 4 63 A V - 0 0 127 1,-0.1 -1,-0.1 2,-0.0 -2,-0.1 -0.228 51.1-107.9 -64.9 155.0 7.2 -1.9 -6.5 5 64 A P - 0 0 75 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 0.126 13.8-127.5 -69.8-170.0 8.8 1.4 -5.4 6 65 A Y S S+ 0 0 216 1,-0.1 4,-0.1 3,-0.1 -2,-0.0 0.544 100.0 64.8-117.4 -18.3 10.8 3.8 -7.5 7 66 A Q S S+ 0 0 90 4,-0.1 4,-0.3 2,-0.1 -1,-0.1 0.026 83.4 142.2 -95.1 26.5 13.9 4.1 -5.3 8 67 A I S S- 0 0 101 2,-0.2 2,-0.2 -3,-0.1 -4,-0.0 -0.984 71.3 -7.0-128.6 134.2 14.8 0.4 -5.8 9 68 A P S S- 0 0 84 0, 0.0 2,-0.4 0, 0.0 -2,-0.1 -0.698 133.8 -39.9 -69.7 -51.3 17.3 -0.8 -6.1 10 69 A Y - 0 0 89 -2,-0.2 -2,-0.2 -4,-0.1 33,-0.0 -1.000 52.5-147.7-140.5 139.3 19.0 2.6 -6.2 11 70 A T > - 0 0 27 -2,-0.4 4,-1.5 -4,-0.3 5,-0.1 -0.710 18.7-130.3-105.3 156.7 18.0 5.9 -7.9 12 71 A P H > S+ 0 0 85 0, 0.0 4,-3.3 0, 0.0 5,-0.4 0.894 105.2 61.3 -69.7 -41.9 20.3 8.6 -9.4 13 72 A S H > S+ 0 0 84 1,-0.2 4,-2.0 2,-0.2 5,-0.1 0.865 105.7 49.3 -53.6 -38.7 18.6 11.5 -7.5 14 73 A E H > S+ 0 0 24 2,-0.2 4,-2.2 3,-0.2 -1,-0.2 0.955 113.8 43.2 -66.6 -52.0 19.6 9.8 -4.2 15 74 A L H X S+ 0 0 19 -4,-1.5 4,-2.5 2,-0.2 5,-0.2 0.947 117.1 46.3 -59.3 -51.4 23.3 9.3 -5.3 16 75 A E H X S+ 0 0 114 -4,-3.3 4,-2.3 1,-0.2 -1,-0.2 0.883 113.4 50.1 -59.3 -40.0 23.6 12.8 -6.8 17 76 A E H X S+ 0 0 88 -4,-2.0 4,-2.2 -5,-0.4 -1,-0.2 0.845 110.1 51.4 -67.7 -34.2 21.9 14.3 -3.7 18 77 A L H X S+ 0 0 13 -4,-2.2 4,-1.9 2,-0.2 -2,-0.2 0.958 112.8 42.7 -67.6 -52.5 24.3 12.4 -1.4 19 78 A Q H X S+ 0 0 45 -4,-2.5 4,-2.3 2,-0.2 5,-0.3 0.930 116.6 48.2 -59.9 -47.8 27.4 13.6 -3.2 20 79 A Q H X S+ 0 0 89 -4,-2.3 4,-1.8 -5,-0.2 -1,-0.2 0.917 112.2 48.7 -59.5 -45.5 26.2 17.1 -3.5 21 80 A N H X S+ 0 0 24 -4,-2.2 4,-1.9 -5,-0.2 5,-0.5 0.819 109.7 55.1 -64.7 -31.2 25.1 17.2 0.1 22 81 A I H X S+ 0 0 0 -4,-1.9 4,-0.6 2,-0.2 -2,-0.2 0.970 114.2 36.0 -66.4 -55.8 28.5 15.9 1.1 23 82 A K H < S+ 0 0 87 -4,-2.3 -2,-0.2 1,-0.2 -1,-0.2 0.738 120.6 51.4 -69.8 -22.6 30.6 18.6 -0.6 24 83 A L H < S+ 0 0 123 -4,-1.8 -1,-0.2 -5,-0.3 -2,-0.2 0.764 128.3 18.4 -84.2 -27.9 27.9 21.1 0.3 25 84 A E H < S+ 0 0 31 -4,-1.9 -3,-0.2 -5,-0.2 -2,-0.2 0.804 117.4 54.1-104.4 -74.6 27.9 20.1 4.0 26 85 A L < + 0 0 3 -4,-0.6 2,-0.3 -5,-0.5 42,-0.0 0.100 64.8 167.1 -54.4 175.8 31.1 18.2 5.0 27 86 A E > + 0 0 128 -3,-0.0 3,-1.0 0, 0.0 4,-0.4 -0.972 40.1 27.0-175.1-179.4 34.5 19.6 4.3 28 87 A G T 3 S- 0 0 56 -2,-0.3 4,-0.4 1,-0.3 -2,-0.0 -0.300 132.1 -7.5 53.2-110.9 38.2 19.3 5.0 29 88 A K T 3 S+ 0 0 128 -2,-0.3 -1,-0.3 2,-0.1 -3,-0.0 -0.244 133.9 61.2-109.9 42.9 38.8 15.6 5.9 30 89 A E S <> S+ 0 0 60 -3,-1.0 4,-1.7 3,-0.1 -2,-0.2 0.592 99.1 44.7-129.9 -49.2 35.1 14.6 5.9 31 90 A Q H > S+ 0 0 39 -4,-0.4 4,-3.0 1,-0.2 5,-0.3 0.812 107.3 63.1 -71.2 -30.7 33.6 15.3 2.5 32 91 A E H > S+ 0 0 95 -4,-0.4 4,-2.7 2,-0.2 -1,-0.2 0.953 106.5 41.9 -58.6 -52.9 36.6 13.7 0.8 33 92 A L H > S+ 0 0 16 2,-0.2 4,-2.4 1,-0.2 5,-0.3 0.955 117.3 47.2 -59.9 -52.9 36.0 10.3 2.3 34 93 A A H X S+ 0 0 11 -4,-1.7 4,-2.2 1,-0.2 -2,-0.2 0.955 118.2 40.4 -53.6 -56.8 32.2 10.4 1.8 35 94 A L H X S+ 0 0 31 -4,-3.0 4,-3.3 2,-0.2 5,-0.3 0.859 111.2 61.2 -61.8 -36.2 32.5 11.6 -1.8 36 95 A E H X S+ 0 0 81 -4,-2.7 4,-2.5 -5,-0.3 -2,-0.2 0.969 110.4 36.9 -54.7 -59.9 35.5 9.2 -2.4 37 96 A L H X S+ 0 0 11 -4,-2.4 4,-2.3 2,-0.2 7,-0.3 0.876 116.4 56.0 -61.6 -38.5 33.5 6.1 -1.6 38 97 A L H < S+ 0 0 2 -4,-2.2 -2,-0.2 -5,-0.3 -1,-0.2 0.949 115.3 35.7 -59.1 -51.9 30.4 7.6 -3.4 39 98 A N H < S+ 0 0 136 -4,-3.3 3,-0.3 1,-0.2 -1,-0.2 0.802 114.2 59.5 -72.3 -29.8 32.3 8.2 -6.6 40 99 A Y H < S+ 0 0 171 -4,-2.5 2,-0.2 -5,-0.3 -2,-0.2 0.864 129.1 2.0 -66.5 -36.7 34.3 5.0 -6.1 41 100 A L >< - 0 0 72 -4,-2.3 3,-2.1 3,-0.3 -1,-0.3 -0.731 56.6-166.1-157.2 101.2 31.1 2.9 -6.1 42 101 A N T 3 S+ 0 0 83 -3,-0.3 4,-0.4 1,-0.3 6,-0.1 0.851 94.1 63.8 -54.5 -36.3 27.6 4.4 -6.6 43 102 A E T 3 S+ 0 0 100 1,-0.2 2,-0.7 2,-0.1 -1,-0.3 0.740 99.2 61.7 -61.0 -22.2 26.2 1.1 -5.4 44 103 A K S < S+ 0 0 91 -3,-2.1 -3,-0.3 -7,-0.3 -1,-0.2 -0.854 95.6 45.9-111.2 97.6 27.9 1.9 -2.0 45 104 A G S > S+ 0 0 2 -2,-0.7 3,-0.8 -6,-0.0 -2,-0.1 -0.343 99.1 42.6 177.9 -88.2 26.5 5.1 -0.6 46 105 A F T 3 S+ 0 0 33 -4,-0.4 -3,-0.1 1,-0.3 -2,-0.1 0.957 139.3 12.3 -48.1 -64.2 22.8 6.0 -0.3 47 106 A L T 3 S+ 0 0 98 -4,-0.1 -1,-0.3 3,-0.0 3,-0.0 0.045 98.9 150.1-103.6 24.1 21.8 2.5 0.8 48 107 A S < - 0 0 20 -3,-0.8 -4,-0.1 -6,-0.1 3,-0.1 0.061 52.6 -87.4 -50.3 167.0 25.4 1.4 1.5 49 108 A K - 0 0 142 1,-0.2 5,-0.1 2,-0.1 -1,-0.1 0.161 68.2 -50.6 -65.0-169.8 26.0 -1.2 4.2 50 109 A S >> - 0 0 67 1,-0.1 4,-1.6 3,-0.1 3,-1.2 -0.163 59.1-101.1 -63.2 160.5 26.6 -0.4 7.9 51 110 A V H 3> S+ 0 0 46 1,-0.3 4,-2.6 2,-0.2 5,-0.2 0.846 124.0 61.4 -50.9 -36.8 29.1 2.3 8.9 52 111 A E H 3> S+ 0 0 136 2,-0.2 4,-2.3 1,-0.2 -1,-0.3 0.875 103.8 49.6 -59.0 -38.9 31.5 -0.6 9.8 53 112 A E H <> S+ 0 0 87 -3,-1.2 4,-2.4 2,-0.2 5,-0.2 0.983 112.7 43.3 -64.5 -60.0 31.4 -1.7 6.1 54 113 A I H X S+ 0 0 7 -4,-1.6 4,-2.3 1,-0.2 6,-0.3 0.869 115.4 51.9 -54.1 -39.2 32.1 1.7 4.5 55 114 A S H X>S+ 0 0 9 -4,-2.6 5,-1.3 -5,-0.3 4,-0.8 0.913 110.0 47.3 -65.0 -44.1 34.8 2.3 7.2 56 115 A D H <5S+ 0 0 115 -4,-2.3 -2,-0.2 -5,-0.2 -1,-0.2 0.835 114.5 47.8 -66.5 -33.1 36.5 -1.0 6.5 57 116 A V H <5S+ 0 0 81 -4,-2.4 -2,-0.2 1,-0.2 -1,-0.2 0.842 117.0 41.1 -76.1 -35.0 36.3 -0.3 2.7 58 117 A L H <5S- 0 0 28 -4,-2.3 -2,-0.2 -5,-0.2 -1,-0.2 0.489 102.9-132.6 -89.8 -4.9 37.7 3.2 3.1 59 118 A R T <5 + 0 0 220 -4,-0.8 2,-0.2 1,-0.2 -3,-0.2 0.708 68.1 123.6 60.1 19.0 40.2 2.0 5.7 60 119 A C S - 0 0 65 -2,-0.2 4,-1.6 1,-0.1 5,-0.1 -0.314 31.5-134.1 -63.4 143.5 37.6 5.2 11.3 62 121 A V H > S+ 0 0 47 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.891 102.5 63.5 -65.4 -40.7 33.9 4.4 11.7 63 122 A E H > S+ 0 0 127 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.918 104.2 47.0 -49.3 -50.5 33.3 7.4 13.8 64 123 A E H > S+ 0 0 49 1,-0.2 4,-2.5 2,-0.2 5,-0.3 0.940 111.7 49.6 -58.3 -50.3 34.2 9.7 10.9 65 124 A L H X S+ 0 0 10 -4,-1.6 4,-2.2 1,-0.2 -1,-0.2 0.843 110.2 53.0 -58.3 -34.5 32.0 7.8 8.5 66 125 A E H X S+ 0 0 76 -4,-2.6 4,-2.6 2,-0.2 -1,-0.2 0.912 109.3 47.6 -67.9 -43.9 29.2 8.0 10.9 67 126 A K H X S+ 0 0 114 -4,-2.2 4,-2.2 2,-0.2 -2,-0.2 0.956 115.2 44.1 -62.1 -52.6 29.5 11.8 11.3 68 127 A V H X S+ 0 0 4 -4,-2.5 4,-2.0 1,-0.2 5,-0.2 0.900 115.3 49.4 -59.7 -42.5 29.6 12.4 7.5 69 128 A R H X S+ 0 0 32 -4,-2.2 4,-1.6 -5,-0.3 -1,-0.2 0.910 111.9 47.7 -63.9 -43.6 26.8 10.0 6.9 70 129 A Q H X S+ 0 0 90 -4,-2.6 4,-1.8 1,-0.2 -1,-0.2 0.843 111.5 51.5 -66.4 -34.0 24.6 11.5 9.6 71 130 A K H < S+ 0 0 75 -4,-2.2 4,-0.3 1,-0.2 -1,-0.2 0.858 116.7 38.8 -71.0 -36.2 25.3 15.0 8.2 72 131 A V H < S+ 0 0 4 -4,-2.0 4,-0.2 -5,-0.2 -2,-0.2 0.636 119.4 48.4 -87.4 -16.4 24.4 13.9 4.7 73 132 A L H >< S+ 0 0 79 -4,-1.6 3,-1.2 -5,-0.2 -2,-0.2 0.700 88.7 81.3 -93.9 -24.3 21.5 11.8 6.0 74 133 A R T 3< S+ 0 0 160 -4,-1.8 -1,-0.2 1,-0.3 -2,-0.1 0.809 81.1 70.1 -50.7 -31.3 20.1 14.5 8.3 75 134 A L T 3 0 0 87 -4,-0.3 -1,-0.3 -3,-0.1 -2,-0.1 0.924 360.0 360.0 -53.2 -49.2 18.4 15.9 5.1 76 135 A E < 0 0 160 -3,-1.2 -3,-0.0 -4,-0.2 -4,-0.0 -0.307 360.0 360.0 -53.7 360.0 16.0 13.0 5.0