==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 19-OCT-08 2K9N . COMPND 2 MOLECULE: MYB24; . SOURCE 2 ORGANISM_SCIENTIFIC: TRICHOMONAS VAGINALIS; . AUTHOR Y.LOU,S.WEI,M.RAJASEKARAN,C.CHOU,H.HSU,J.TAI,C.CHEN . 107 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7703.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 79 73.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 20 18.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 53 49.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 1 0 0 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A K 0 0 166 0, 0.0 4,-0.1 0, 0.0 73,-0.1 0.000 360.0 360.0 360.0 162.9 -1.6 9.2 1.3 2 2 A V - 0 0 13 2,-0.2 4,-0.1 1,-0.1 32,-0.0 -0.289 360.0-100.2 -74.2 165.3 -4.9 8.0 -0.3 3 3 A K S S+ 0 0 139 30,-0.1 -1,-0.1 2,-0.1 2,-0.1 0.946 109.1 57.1 -52.6 -50.1 -8.1 10.1 0.2 4 4 A F S S- 0 0 18 1,-0.1 -2,-0.2 2,-0.0 2,-0.2 -0.410 91.2-115.6 -81.2 160.7 -9.3 7.7 2.9 5 5 A T >> - 0 0 69 -2,-0.1 3,-2.1 1,-0.1 4,-1.4 -0.539 31.4 -99.6 -93.2 161.3 -7.3 7.0 6.1 6 6 A E H 3> S+ 0 0 63 1,-0.3 4,-1.3 2,-0.2 5,-0.2 0.886 121.1 68.3 -46.5 -41.3 -5.9 3.7 7.2 7 7 A E H 3> S+ 0 0 123 1,-0.3 4,-1.2 2,-0.2 3,-0.5 0.895 100.5 49.2 -49.1 -37.4 -8.9 3.3 9.5 8 8 A E H X> S+ 0 0 23 -3,-2.1 4,-2.5 1,-0.2 3,-0.8 0.959 98.2 65.3 -67.4 -47.2 -11.0 3.0 6.3 9 9 A D H 3X S+ 0 0 1 -4,-1.4 4,-1.3 1,-0.3 -1,-0.2 0.816 101.6 53.1 -45.8 -26.8 -8.6 0.4 4.9 10 10 A L H 3X S+ 0 0 77 -4,-1.3 4,-1.3 -3,-0.5 -1,-0.3 0.915 103.8 53.3 -76.9 -40.7 -9.8 -1.7 7.8 11 11 A K H S+ 0 0 1 -4,-2.5 4,-2.2 1,-0.3 5,-0.7 0.950 97.1 58.3 -56.7 -46.3 -12.4 -2.4 3.3 13 13 A Q H X5S+ 0 0 113 -4,-1.3 4,-0.6 -5,-0.2 -1,-0.3 0.903 115.3 37.8 -52.7 -36.2 -11.4 -5.7 4.9 14 14 A Q H X5S+ 0 0 127 -4,-1.3 4,-1.6 -3,-0.5 -2,-0.2 0.963 123.1 37.7 -80.7 -56.5 -15.0 -6.0 6.2 15 15 A L H >X5S+ 0 0 41 -4,-3.2 4,-2.3 1,-0.2 3,-1.0 0.981 119.2 48.8 -60.4 -52.9 -17.0 -4.6 3.2 16 16 A V H 3X5S+ 0 0 4 -4,-2.2 4,-1.8 -5,-0.4 -1,-0.2 0.867 107.3 57.2 -56.4 -32.1 -14.7 -6.2 0.7 17 17 A M H 3<> + 0 0 46 -4,-0.3 4,-2.2 1,-0.2 3,-1.0 -0.284 50.8 139.2-104.7 48.3 -18.3 -4.9 -6.6 24 24 A W H 3> + 0 0 7 1,-0.3 4,-2.5 2,-0.2 5,-0.2 0.834 67.0 63.8 -61.6 -28.8 -16.0 -1.9 -6.1 25 25 A I H 3> S+ 0 0 125 -3,-0.3 4,-1.0 2,-0.2 -1,-0.3 0.863 106.2 45.1 -64.5 -30.3 -18.6 0.2 -7.9 26 26 A R H X> S+ 0 0 120 -3,-1.0 4,-1.5 2,-0.2 3,-0.7 0.955 112.4 48.0 -77.3 -51.6 -21.0 -0.6 -5.0 27 27 A I H 3X S+ 0 0 0 -4,-2.2 4,-1.6 1,-0.3 -2,-0.2 0.866 111.0 54.4 -57.2 -31.8 -18.5 -0.0 -2.2 28 28 A S H 3< S+ 0 0 9 -4,-2.5 6,-0.3 -5,-0.3 -1,-0.3 0.838 98.1 62.5 -73.2 -29.3 -17.7 3.3 -4.0 29 29 A Q H X< S+ 0 0 137 -4,-1.0 3,-0.8 -3,-0.7 -1,-0.2 0.941 102.9 50.4 -62.0 -40.9 -21.4 4.3 -3.9 30 30 A L H 3< S+ 0 0 86 -4,-1.5 2,-0.5 1,-0.3 -1,-0.2 0.976 129.7 20.5 -59.5 -52.3 -21.2 4.2 -0.1 31 31 A M T >< + 0 0 61 -4,-1.6 3,-1.7 1,-0.1 -1,-0.3 -0.610 69.4 171.1-116.2 71.1 -18.1 6.4 -0.2 32 32 A I T < + 0 0 116 -3,-0.8 -1,-0.1 -2,-0.5 -3,-0.1 0.571 62.8 93.8 -58.8 -0.9 -18.2 8.1 -3.6 33 33 A T T 3 S+ 0 0 102 -5,-0.1 2,-0.3 -3,-0.1 -1,-0.3 0.549 91.6 38.2 -70.5 -1.3 -15.3 10.2 -2.1 34 34 A R S < S- 0 0 7 -3,-1.7 -3,-0.1 -6,-0.3 -32,-0.0 -0.964 88.2-110.1-143.8 160.5 -13.0 7.6 -3.8 35 35 A N >> - 0 0 105 -2,-0.3 4,-1.4 1,-0.1 3,-1.2 -0.613 33.0-111.7 -91.5 154.0 -13.0 5.5 -7.1 36 36 A P H 3> S+ 0 0 38 0, 0.0 4,-1.9 0, 0.0 5,-0.2 0.858 120.7 53.9 -51.9 -35.2 -13.6 1.7 -7.1 37 37 A R H 3> S+ 0 0 177 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.812 100.0 62.1 -71.7 -27.6 -9.9 1.3 -8.1 38 38 A Q H <> S+ 0 0 37 -3,-1.2 4,-0.6 2,-0.2 -1,-0.2 0.937 111.3 35.9 -66.5 -42.7 -8.8 3.4 -5.1 39 39 A C H >X S+ 0 0 0 -4,-1.4 4,-1.3 2,-0.2 3,-0.7 0.872 117.0 54.2 -78.1 -33.4 -10.2 0.9 -2.6 40 40 A R H >X S+ 0 0 113 -4,-1.9 4,-1.3 -5,-0.3 3,-0.7 0.953 96.4 64.8 -64.4 -45.2 -9.3 -2.1 -4.8 41 41 A E H 3X S+ 0 0 28 -4,-2.8 4,-1.5 1,-0.3 -1,-0.2 0.840 103.0 51.2 -47.2 -29.5 -5.7 -0.9 -4.9 42 42 A R H S+ 0 0 12 -3,-0.7 5,-1.2 -4,-0.6 4,-0.9 0.899 97.5 66.9 -76.3 -38.8 -5.8 -1.6 -1.2 43 43 A W H XX5S+ 0 0 71 -4,-1.3 4,-0.8 -3,-0.7 3,-0.7 0.946 115.6 26.3 -45.8 -58.3 -7.2 -5.2 -1.6 44 44 A N H 3<5S+ 0 0 39 -4,-1.3 -1,-0.2 1,-0.2 -2,-0.2 0.848 127.9 47.0 -77.2 -33.2 -4.0 -6.4 -3.3 45 45 A N H 3<5S+ 0 0 0 -4,-1.5 42,-1.6 -5,-0.4 43,-0.5 0.227 133.1 14.4 -93.0 17.5 -1.7 -3.9 -1.6 46 46 A Y H <<5S+ 0 0 31 -4,-0.9 2,-0.4 -3,-0.7 5,-0.2 0.366 130.4 8.7-152.0 -55.5 -3.3 -4.5 1.9 47 47 A I S < + 0 0 16 -5,-0.2 3,-1.0 1,-0.2 35,-0.2 0.019 28.1 133.0 -91.0 30.1 1.2 -10.9 3.1 52 52 A R T 3 S+ 0 0 221 1,-0.3 -1,-0.2 33,-0.1 -2,-0.0 0.629 86.9 26.3 -57.6 -5.2 1.3 -10.3 6.9 53 53 A T T 3 S+ 0 0 118 -3,-0.3 -1,-0.3 1,-0.1 32,-0.0 -0.354 82.4 118.0-156.4 67.7 4.9 -11.5 6.5 54 54 A D < + 0 0 51 -3,-1.0 2,-0.2 32,-0.1 32,-0.1 -0.499 36.7 178.2-134.1 65.4 6.3 -10.8 2.9 55 55 A P - 0 0 69 0, 0.0 35,-0.1 0, 0.0 -3,-0.0 -0.460 22.4-132.2 -72.2 137.2 9.3 -8.5 3.4 56 56 A W - 0 0 5 -2,-0.2 26,-0.0 33,-0.1 0, 0.0 -0.080 18.8-124.2 -77.5-176.1 11.2 -7.5 0.2 57 57 A S >> - 0 0 63 0, 0.0 3,-1.9 0, 0.0 4,-1.3 -0.664 44.3 -70.9-123.1 179.5 15.0 -7.6 -0.2 58 58 A P H 3> S+ 0 0 84 0, 0.0 4,-3.0 0, 0.0 5,-0.4 0.688 121.2 77.9 -47.7 -16.6 17.7 -5.0 -1.2 59 59 A E H 3> S+ 0 0 134 2,-0.2 4,-2.6 1,-0.2 5,-0.2 0.961 99.8 37.9 -62.0 -47.0 16.3 -5.3 -4.8 60 60 A E H <> S+ 0 0 26 -3,-1.9 4,-3.0 2,-0.2 5,-0.3 0.907 112.9 59.2 -71.4 -36.6 13.4 -3.1 -3.8 61 61 A D H X S+ 0 0 8 -4,-1.3 4,-1.9 2,-0.2 -2,-0.2 0.962 114.9 34.7 -55.4 -50.9 15.8 -0.9 -1.6 62 62 A M H X S+ 0 0 110 -4,-3.0 4,-0.7 1,-0.2 -1,-0.2 0.907 123.6 44.4 -72.3 -39.9 17.9 -0.1 -4.7 63 63 A L H X S+ 0 0 89 -4,-2.6 4,-1.5 -5,-0.4 -2,-0.2 0.745 111.6 56.0 -76.9 -18.9 14.9 -0.0 -7.1 64 64 A L H X>S+ 0 0 2 -4,-3.0 4,-2.9 -5,-0.2 5,-0.7 0.908 94.3 64.2 -78.5 -41.0 13.0 2.0 -4.5 65 65 A D H X5S+ 0 0 69 -4,-1.9 4,-0.9 -5,-0.3 -1,-0.2 0.867 108.1 45.5 -50.2 -31.3 15.6 4.7 -4.3 66 66 A Q H X5S+ 0 0 129 -4,-0.7 4,-0.5 2,-0.1 -1,-0.2 0.912 121.2 35.3 -79.4 -44.0 14.7 5.3 -8.0 67 67 A K H >X>S+ 0 0 44 -4,-1.5 4,-3.0 2,-0.2 3,-1.9 0.972 118.7 49.0 -75.0 -54.5 10.9 5.2 -7.5 68 68 A Y H 3<5S+ 0 0 90 -4,-2.9 4,-0.2 1,-0.3 -3,-0.2 0.931 103.5 62.4 -50.2 -46.2 10.8 6.9 -4.0 69 69 A A H 3<> + 0 0 95 1,-0.2 3,-2.6 -6,-0.1 4,-1.7 -0.405 29.3 172.8 -81.8 67.2 3.8 6.9 -1.6 75 75 A W H 3> S+ 0 0 13 -2,-2.3 4,-2.0 1,-0.3 -1,-0.2 0.644 70.5 75.2 -53.2 -6.9 3.8 3.2 -0.9 76 76 A N H 34 S+ 0 0 24 2,-0.2 4,-0.3 1,-0.2 -1,-0.3 0.882 103.2 34.5 -74.3 -35.2 0.5 3.3 -2.8 77 77 A K H <4 S+ 0 0 87 -3,-2.6 4,-0.5 2,-0.1 3,-0.2 0.853 121.4 48.5 -85.4 -37.4 2.4 3.7 -6.1 78 78 A I H >X S+ 0 0 1 -4,-1.7 3,-3.3 1,-0.2 4,-1.0 0.977 104.3 57.4 -67.6 -53.9 5.3 1.5 -5.0 79 79 A S H 3X S+ 0 0 0 -4,-2.0 4,-2.7 1,-0.3 6,-0.3 0.784 100.8 61.2 -49.0 -24.0 3.1 -1.4 -3.8 80 80 A K H 34 S+ 0 0 81 -4,-0.3 -1,-0.3 -3,-0.2 -2,-0.2 0.743 100.9 52.0 -77.1 -19.4 1.6 -1.4 -7.3 81 81 A F H <4 S+ 0 0 115 -3,-3.3 -1,-0.2 -4,-0.5 -2,-0.2 0.649 118.0 38.7 -87.9 -15.0 5.1 -2.2 -8.7 82 82 A L H < + 0 0 10 -4,-1.0 -2,-0.2 -3,-0.2 -3,-0.1 0.871 67.6 179.2 -97.4 -58.2 5.4 -5.1 -6.2 83 83 A K S < S+ 0 0 137 -4,-2.7 -3,-0.1 2,-0.2 -4,-0.1 0.599 75.4 77.2 64.1 5.2 1.9 -6.6 -6.1 84 84 A N S S+ 0 0 88 -5,-0.2 2,-0.2 -39,-0.1 -1,-0.1 0.524 95.5 37.2-117.6 -16.3 3.5 -9.0 -3.7 85 85 A R S S- 0 0 48 -6,-0.3 2,-0.3 -33,-0.0 -2,-0.2 -0.702 74.4-123.8-128.2-179.9 3.6 -6.7 -0.6 86 86 A S >> - 0 0 3 -35,-0.2 4,-2.8 -2,-0.2 3,-1.1 -0.864 29.2-109.9-124.7 160.4 1.4 -4.1 1.0 87 87 A D H 3> S+ 0 0 13 -42,-1.6 4,-3.2 -2,-0.3 5,-0.5 0.870 121.6 59.6 -58.9 -31.7 2.0 -0.5 2.0 88 88 A N H 3> S+ 0 0 85 -43,-0.5 4,-0.6 1,-0.2 -1,-0.3 0.848 110.0 42.1 -66.2 -29.8 1.8 -1.7 5.6 89 89 A N H <> S+ 0 0 19 -3,-1.1 4,-3.2 3,-0.2 5,-0.3 0.874 121.0 41.0 -83.1 -39.2 4.8 -4.0 4.8 90 90 A I H X S+ 0 0 2 -4,-2.8 4,-3.6 2,-0.2 5,-0.4 0.974 116.1 47.4 -72.5 -54.8 6.6 -1.3 2.7 91 91 A R H X S+ 0 0 122 -4,-3.2 4,-0.6 -5,-0.2 -1,-0.2 0.858 121.4 41.4 -54.2 -32.8 5.9 1.6 5.1 92 92 A N H X S+ 0 0 100 -4,-0.6 4,-0.7 -5,-0.5 -2,-0.2 0.887 119.2 41.1 -84.4 -42.8 7.0 -0.8 7.9 93 93 A R H >X S+ 0 0 43 -4,-3.2 4,-2.9 2,-0.2 3,-0.8 0.905 108.7 60.0 -74.9 -37.1 10.0 -2.4 6.2 94 94 A W H 3X S+ 0 0 43 -4,-3.6 4,-3.3 -5,-0.3 5,-0.2 0.899 104.1 52.1 -56.8 -36.2 11.2 0.9 4.7 95 95 A M H 3< S+ 0 0 123 -4,-0.6 4,-0.5 -5,-0.4 -1,-0.3 0.804 110.3 49.0 -70.9 -24.8 11.5 2.2 8.3 96 96 A M H << S+ 0 0 140 -3,-0.8 4,-0.3 -4,-0.7 -2,-0.2 0.890 120.8 34.1 -80.5 -39.6 13.5 -0.9 9.1 97 97 A I H >X S+ 0 0 37 -4,-2.9 4,-1.1 1,-0.2 3,-0.9 0.818 116.4 55.5 -84.3 -30.7 15.9 -0.5 6.1 98 98 A A H 3X S+ 0 0 24 -4,-3.3 4,-1.1 -5,-0.4 -3,-0.2 0.728 96.6 67.3 -73.6 -17.2 15.8 3.3 6.3 99 99 A R H 3> S+ 0 0 188 -4,-0.5 4,-0.5 -5,-0.2 -1,-0.2 0.751 98.0 52.9 -73.4 -20.5 16.9 3.0 9.9 100 100 A H H <4 S+ 0 0 76 -3,-0.9 5,-0.4 -4,-0.3 6,-0.3 0.874 115.8 37.1 -81.4 -38.0 20.2 1.7 8.6 101 101 A R H < S+ 0 0 57 -4,-1.1 -2,-0.2 1,-0.2 -1,-0.2 0.588 95.4 89.8 -88.1 -10.1 20.8 4.7 6.2 102 102 A A H < S+ 0 0 74 -4,-1.1 -1,-0.2 -5,-0.2 -2,-0.1 0.948 101.0 24.4 -51.9 -50.8 19.2 7.1 8.8 103 103 A K S < S- 0 0 174 -4,-0.5 -2,-0.1 -3,-0.2 -3,-0.1 0.852 119.0 -84.0 -79.9 -96.3 22.7 7.7 10.4 104 104 A H S > S+ 0 0 154 -4,-0.3 3,-2.2 2,-0.0 -3,-0.1 0.266 88.0 119.4-158.7 1.9 25.5 7.0 7.9 105 105 A Q T 3 + 0 0 117 -5,-0.4 -4,-0.2 1,-0.3 -5,-0.1 0.683 52.8 97.0 -52.1 -11.5 26.1 3.3 8.2 106 106 A K T 3 0 0 126 -6,-0.3 -1,-0.3 1,-0.2 -5,-0.1 0.728 360.0 360.0 -53.6 -15.5 25.2 3.4 4.4 107 107 A S < 0 0 161 -3,-2.2 -1,-0.2 -6,-0.0 -2,-0.2 0.320 360.0 360.0-156.3 360.0 29.0 3.4 4.0