==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER CHAPERONE 18-OCT-09 3KA5 . COMPND 2 MOLECULE: RIBOSOME-ASSOCIATED PROTEIN Y (PSRP-1); . SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM ACETOBUTYLICUM; . AUTHOR J.SEETHARAMAN,H.NEELY,D.WANG,H.JANJUA,K.CUNNINGHAM,L.OWENS, . 116 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7377.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 83 71.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 16 13.8 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 20.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 15 12.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 20 17.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 4 3.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A E 0 0 165 0, 0.0 108,-1.9 0, 0.0 2,-0.6 0.000 360.0 360.0 360.0 172.3 17.2 14.6 33.6 2 2 A I E -a 109 0A 29 106,-0.2 2,-0.6 108,-0.0 108,-0.2 -0.928 360.0-145.9-109.3 113.3 16.0 13.2 30.3 3 3 A V E -a 110 0A 33 106,-3.2 108,-2.7 -2,-0.6 2,-0.4 -0.705 13.1-146.0 -84.2 116.3 14.2 15.8 28.2 4 4 A K E +a 111 0A 94 -2,-0.6 2,-0.3 106,-0.2 108,-0.2 -0.674 25.4 165.3 -87.2 129.8 11.4 14.3 26.1 5 5 A T E -a 112 0A 51 106,-2.8 108,-2.5 -2,-0.4 2,-0.3 -0.949 34.4-112.8-139.2 157.3 10.7 15.7 22.6 6 6 A K E -a 113 0A 96 -2,-0.3 109,-0.1 106,-0.2 4,-0.1 -0.666 49.4 -85.0 -91.3 147.7 8.7 14.5 19.6 7 7 A R - 0 0 22 106,-2.4 -1,-0.1 -2,-0.3 25,-0.0 -0.249 35.3-144.4 -50.2 128.7 10.4 13.6 16.4 8 8 A F S S+ 0 0 183 1,-0.2 2,-1.4 23,-0.1 -1,-0.1 0.919 87.2 70.0 -66.2 -46.0 10.9 16.9 14.4 9 9 A A + 0 0 11 22,-0.5 24,-0.3 1,-0.2 -1,-0.2 -0.610 62.5 171.7 -76.8 94.4 10.3 15.3 11.0 10 10 A I + 0 0 108 -2,-1.4 -1,-0.2 22,-0.1 -3,-0.1 0.924 53.2 66.8 -71.3 -45.7 6.6 14.6 11.2 11 11 A K S S- 0 0 168 1,-0.1 22,-0.3 21,-0.0 24,-0.1 -0.525 91.0-103.4 -84.4 142.8 5.8 13.6 7.7 12 12 A P + 0 0 83 0, 0.0 2,-0.3 0, 0.0 22,-0.2 -0.241 46.9 170.1 -60.7 146.4 7.2 10.4 6.0 13 13 A X B -e 34 0B 22 20,-2.4 22,-2.2 -4,-0.1 23,-0.4 -0.953 33.3 -90.3-151.3 169.4 10.0 10.8 3.6 14 14 A S > - 0 0 32 -2,-0.3 4,-2.6 20,-0.2 5,-0.1 -0.375 35.5-112.9 -81.4 163.2 12.6 8.8 1.6 15 15 A E H > S+ 0 0 25 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.892 119.7 54.2 -61.1 -39.6 16.0 7.8 2.9 16 16 A E H > S+ 0 0 112 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.919 110.1 44.8 -61.0 -45.8 17.5 10.1 0.2 17 17 A E H > S+ 0 0 92 1,-0.2 4,-2.9 2,-0.2 -1,-0.2 0.892 110.1 56.9 -66.3 -38.4 15.4 13.1 1.4 18 18 A A H X S+ 0 0 0 -4,-2.6 4,-2.5 2,-0.2 -2,-0.2 0.902 106.5 48.3 -59.6 -44.7 16.3 12.2 5.0 19 19 A V H X S+ 0 0 15 -4,-2.2 4,-2.0 2,-0.2 -1,-0.2 0.942 113.5 46.6 -63.4 -45.5 20.0 12.4 4.3 20 20 A L H X S+ 0 0 97 -4,-1.9 4,-3.0 1,-0.2 5,-0.2 0.918 112.3 51.0 -62.7 -42.8 19.7 15.7 2.5 21 21 A E H X S+ 0 0 59 -4,-2.9 4,-2.4 1,-0.2 6,-0.2 0.914 107.7 52.2 -61.0 -44.4 17.5 17.1 5.3 22 22 A X H X>S+ 0 0 0 -4,-2.5 5,-2.2 1,-0.2 4,-0.7 0.918 113.6 45.2 -58.1 -42.5 20.0 16.1 8.0 23 23 A E H ><5S+ 0 0 66 -4,-2.0 3,-0.7 2,-0.2 -2,-0.2 0.927 113.0 47.7 -68.3 -46.1 22.7 17.9 6.1 24 24 A L H 3<5S+ 0 0 121 -4,-3.0 -1,-0.2 1,-0.2 -2,-0.2 0.846 114.1 48.2 -64.5 -33.4 20.8 21.1 5.3 25 25 A L H 3<5S- 0 0 86 -4,-2.4 -1,-0.2 -5,-0.2 -2,-0.2 0.576 113.4-118.9 -84.3 -10.6 19.6 21.3 8.9 26 26 A G T <<5 + 0 0 62 -4,-0.7 -3,-0.2 -3,-0.7 2,-0.2 0.701 61.6 142.2 83.5 21.9 23.2 20.8 10.3 27 27 A H < - 0 0 104 -5,-2.2 -1,-0.2 -6,-0.2 3,-0.1 -0.512 50.8-146.6 -98.3 164.4 22.6 17.6 12.2 28 28 A N S S+ 0 0 109 1,-0.2 17,-2.2 -2,-0.2 2,-0.3 0.556 89.4 18.0 -99.9 -18.6 24.7 14.4 12.8 29 29 A F E - F 0 44B 31 15,-0.2 2,-0.4 -7,-0.1 15,-0.3 -0.967 68.4-160.4-148.0 156.4 21.8 12.0 13.1 30 30 A F E - F 0 43B 18 13,-2.6 13,-2.3 -2,-0.3 2,-0.4 -0.953 7.8-149.0-149.4 122.4 18.1 12.3 11.9 31 31 A V E + F 0 42B 16 -2,-0.4 -22,-0.5 11,-0.2 2,-0.3 -0.764 31.8 158.0 -92.2 132.7 15.0 10.4 12.9 32 32 A F E - F 0 41B 0 9,-2.5 9,-3.0 -2,-0.4 2,-0.8 -0.992 47.2-109.5-153.0 160.1 12.3 10.0 10.3 33 33 A Q E - F 0 40B 50 -24,-0.3 -20,-2.4 -22,-0.3 2,-0.6 -0.828 39.6-133.2 -89.8 113.5 9.4 8.0 9.2 34 34 A N E >>> -eF 13 39B 2 5,-2.9 4,-1.9 -2,-0.8 5,-0.6 -0.574 13.0-159.7 -71.8 115.1 10.5 6.1 6.1 35 35 A G T 345S+ 0 0 34 -22,-2.2 -1,-0.2 -2,-0.6 -21,-0.2 0.666 88.3 53.7 -69.8 -16.1 7.8 6.5 3.5 36 36 A D T 345S+ 0 0 128 -23,-0.4 -1,-0.2 3,-0.1 -22,-0.1 0.681 123.4 24.3 -91.3 -19.9 8.9 3.5 1.5 37 37 A S T <45S- 0 0 54 -3,-0.6 -2,-0.2 2,-0.2 -1,-0.1 0.417 94.6-130.2-121.7 -5.3 8.8 1.0 4.5 38 38 A N T <5S+ 0 0 117 -4,-1.9 2,-0.3 1,-0.2 -3,-0.2 0.731 72.4 114.5 60.2 23.1 6.3 2.7 6.7 39 39 A E E - 0 0 86 4,-2.7 3,-2.0 -2,-0.5 -1,-0.0 -0.645 24.7-114.5 -91.5 148.9 29.7 8.0 9.7 47 47 A K T 3 S+ 0 0 214 1,-0.3 -1,-0.1 -2,-0.3 4,-0.1 0.244 113.0 63.4 -67.2 17.4 33.4 8.9 10.4 48 48 A D T 3 S- 0 0 80 2,-0.2 -1,-0.3 0, 0.0 3,-0.1 0.160 120.5-101.6-124.5 14.4 34.3 7.8 6.9 49 49 A G S < S+ 0 0 47 -3,-2.0 -2,-0.1 1,-0.3 0, 0.0 0.118 90.3 112.9 87.5 -22.7 32.2 10.3 5.1 50 50 A N - 0 0 47 -5,-0.1 -4,-2.7 1,-0.1 2,-0.4 -0.157 65.9-118.2 -76.2 174.0 29.5 7.8 4.3 51 51 A Y E -Gh 45 60B 40 8,-2.5 10,-3.3 -6,-0.2 2,-0.3 -0.903 19.1-149.0-115.6 144.4 26.0 7.8 5.7 52 52 A G E -Gh 44 61B 0 -8,-3.1 -8,-2.1 -2,-0.4 2,-0.4 -0.831 3.0-158.0-112.1 152.5 24.5 5.1 7.9 53 53 A L E -Gh 43 62B 0 8,-3.2 10,-2.8 -2,-0.3 2,-0.5 -0.973 5.3-159.2-132.6 115.9 20.8 4.0 8.0 54 54 A I E +Gh 42 63B 21 -12,-3.1 -12,-1.8 -2,-0.4 10,-0.2 -0.854 18.6 170.2 -99.3 125.2 19.5 2.2 11.1 55 55 A E E - h 0 64B 26 8,-2.2 10,-1.8 -2,-0.5 -14,-0.1 -0.906 43.4-122.5-131.0 157.6 16.3 0.2 10.6 56 56 A P 0 0 51 0, 0.0 8,-0.1 0, 0.0 -15,-0.1 0.677 360.0 360.0 -73.2 -15.9 14.4 -2.3 12.8 57 57 A E 0 0 161 6,-0.1 -2,-0.2 7,-0.0 0, 0.0 -0.299 360.0 360.0 -50.2 360.0 14.7 -4.9 10.1 58 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 59 1 B E 0 0 152 0, 0.0 -8,-2.5 0, 0.0 2,-0.6 0.000 360.0 360.0 360.0 -8.2 27.2 5.2 0.3 60 2 B I E -h 51 0B 51 -10,-0.2 2,-0.7 -17,-0.0 -8,-0.2 -0.969 360.0-154.4-115.9 109.3 24.2 4.7 2.6 61 3 B V E -h 52 0B 47 -10,-3.3 -8,-3.2 -2,-0.6 2,-0.5 -0.777 5.2-151.1 -91.2 112.8 25.1 1.7 4.8 62 4 B K E +h 53 0B 112 -2,-0.7 2,-0.3 -10,-0.2 -8,-0.2 -0.734 23.5 166.7 -87.3 123.9 22.0 -0.0 6.2 63 5 B T E -h 54 0B 55 -10,-2.8 -8,-2.2 -2,-0.5 2,-0.3 -0.917 34.5-110.5-133.0 159.3 22.3 -1.8 9.5 64 6 B K E -h 55 0B 119 -2,-0.3 4,-0.1 -10,-0.2 -10,-0.0 -0.653 47.9 -86.3 -90.8 148.4 19.9 -3.2 12.0 65 7 B R - 0 0 32 -10,-1.8 -1,-0.1 -2,-0.3 25,-0.0 -0.285 36.5-144.4 -51.6 129.8 19.3 -1.6 15.4 66 8 B F S S+ 0 0 180 1,-0.2 2,-1.3 23,-0.1 -1,-0.1 0.925 85.3 68.6 -67.1 -48.0 21.9 -3.0 17.7 67 9 B A + 0 0 11 22,-0.5 24,-0.4 1,-0.2 -1,-0.2 -0.629 62.4 174.7 -78.0 96.4 19.8 -3.1 20.9 68 10 B I + 0 0 110 -2,-1.3 -1,-0.2 22,-0.1 -3,-0.1 0.878 54.3 66.0 -71.2 -42.5 17.4 -5.9 20.0 69 11 B K S S- 0 0 162 1,-0.1 22,-0.3 21,-0.0 24,-0.1 -0.600 91.1-101.1 -89.3 144.6 15.5 -6.2 23.3 70 12 B P + 0 0 81 0, 0.0 2,-0.3 0, 0.0 22,-0.2 -0.234 46.7 171.7 -59.9 146.1 13.2 -3.6 24.8 71 13 B X B -b 92 0A 21 20,-2.4 22,-2.1 -4,-0.1 23,-0.4 -0.954 33.9 -91.4-151.3 167.8 14.5 -1.4 27.6 72 14 B S > - 0 0 51 -2,-0.3 4,-2.2 20,-0.2 5,-0.2 -0.417 37.9-113.1 -80.0 158.7 13.7 1.6 29.8 73 15 B E H > S+ 0 0 29 1,-0.2 4,-2.0 2,-0.2 5,-0.2 0.870 118.5 53.4 -60.4 -35.9 14.9 5.1 28.8 74 16 B E H > S+ 0 0 116 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.908 108.8 47.8 -65.0 -43.4 17.2 5.1 31.8 75 17 B E H > S+ 0 0 89 1,-0.2 4,-2.8 2,-0.2 -1,-0.2 0.871 109.5 55.1 -65.5 -34.3 18.8 1.9 30.8 76 18 B A H X S+ 0 0 0 -4,-2.2 4,-2.6 2,-0.2 -2,-0.2 0.901 107.1 48.7 -65.1 -41.4 19.2 3.3 27.3 77 19 B V H X S+ 0 0 16 -4,-2.0 4,-1.9 2,-0.2 -1,-0.2 0.916 112.9 48.3 -64.2 -41.3 21.1 6.3 28.5 78 20 B L H X S+ 0 0 99 -4,-2.1 4,-2.8 1,-0.2 5,-0.2 0.939 112.7 48.2 -62.7 -47.5 23.3 4.1 30.6 79 21 B E H X S+ 0 0 57 -4,-2.8 4,-2.4 1,-0.2 6,-0.2 0.894 107.8 55.2 -60.0 -43.0 23.9 1.8 27.6 80 22 B X H X>S+ 0 0 0 -4,-2.6 5,-2.2 1,-0.2 4,-0.7 0.926 113.2 42.2 -58.4 -43.0 24.7 4.7 25.3 81 23 B E H ><5S+ 0 0 74 -4,-1.9 3,-0.5 2,-0.2 -2,-0.2 0.911 113.0 50.8 -70.5 -43.4 27.4 5.9 27.7 82 24 B L H 3<5S+ 0 0 121 -4,-2.8 -1,-0.2 1,-0.2 -2,-0.2 0.852 115.2 44.7 -62.6 -34.8 28.9 2.5 28.4 83 25 B L H 3<5S- 0 0 81 -4,-2.4 -1,-0.2 -5,-0.2 -2,-0.2 0.578 112.7-120.8 -86.4 -12.2 29.1 1.8 24.7 84 26 B G T <<5 + 0 0 61 -4,-0.7 -3,-0.2 -3,-0.5 2,-0.2 0.734 59.5 142.1 81.6 25.7 30.5 5.2 23.9 85 27 B H < - 0 0 109 -5,-2.2 -1,-0.2 -6,-0.2 3,-0.1 -0.561 52.1-141.7-100.8 164.4 27.9 6.6 21.5 86 28 B N S S+ 0 0 120 1,-0.2 17,-1.7 -2,-0.2 2,-0.3 0.547 91.0 15.2 -95.7 -16.3 26.4 10.0 21.0 87 29 B F E - C 0 102A 30 15,-0.2 2,-0.3 -7,-0.1 15,-0.3 -0.965 68.1-157.7-152.0 158.1 22.9 8.7 20.3 88 30 B F E - C 0 101A 15 13,-2.6 13,-2.4 -2,-0.3 2,-0.4 -0.957 6.9-149.1-149.0 123.1 21.2 5.3 20.8 89 31 B V E + C 0 100A 16 -2,-0.3 -22,-0.5 11,-0.2 2,-0.3 -0.774 31.7 157.7 -92.6 133.4 18.2 3.8 19.1 90 32 B F E - C 0 99A 0 9,-2.6 9,-3.1 -2,-0.4 2,-0.8 -0.987 47.9-106.8-153.6 161.7 16.1 1.4 21.2 91 33 B Q E - C 0 98A 51 -24,-0.4 -20,-2.4 -22,-0.3 2,-0.5 -0.831 40.7-134.0 -90.3 113.0 12.7 -0.2 21.7 92 34 B N E >> -bC 71 97A 4 5,-3.1 4,-1.8 -2,-0.8 5,-0.6 -0.589 9.6-155.9 -72.0 118.7 11.1 1.6 24.7 93 35 B G T 45S+ 0 0 40 -22,-2.1 -1,-0.2 -2,-0.5 -21,-0.2 0.624 89.3 59.6 -70.7 -12.4 9.7 -1.1 26.9 94 36 B D T 45S+ 0 0 133 -23,-0.4 -1,-0.2 3,-0.1 -22,-0.1 0.849 123.4 16.9 -82.9 -37.3 7.2 1.4 28.4 95 37 B S T 45S- 0 0 23 -3,-0.3 -2,-0.2 2,-0.2 -1,-0.1 0.401 94.9-126.3-115.6 -1.3 5.5 2.3 25.2 96 38 B N T <5S+ 0 0 122 -4,-1.8 2,-0.3 1,-0.2 -3,-0.2 0.744 73.6 117.3 60.9 23.1 6.5 -0.6 22.9 97 39 B E E - 0 0 80 4,-1.7 2,-2.5 -2,-0.5 3,-1.7 -0.878 30.8-107.5-110.1 139.9 22.9 17.4 24.2 105 47 B K T 3 S+ 0 0 216 -2,-0.4 4,-0.1 1,-0.3 -2,-0.0 -0.383 108.3 70.9 -62.4 80.3 25.4 20.1 24.8 106 48 B D T 3 S- 0 0 96 -2,-2.5 -1,-0.3 2,-0.2 3,-0.1 0.186 112.9-102.8-171.1 -9.6 23.7 21.2 28.0 107 49 B G S < S+ 0 0 57 -3,-1.7 -2,-0.1 1,-0.4 2,-0.0 -0.083 92.5 97.1 99.9 -34.0 24.6 18.3 30.3 108 50 B N S S- 0 0 43 -4,-0.1 -4,-1.7 -5,-0.1 -1,-0.4 -0.170 70.8-120.0 -80.9 178.0 21.2 16.7 30.1 109 51 B Y E -aD 2 103A 51 -108,-1.9 -106,-3.2 -6,-0.2 2,-0.3 -0.875 19.5-140.4-118.3 151.7 20.1 13.9 27.8 110 52 B G E -aD 3 102A 0 -8,-2.9 -8,-2.0 -2,-0.3 2,-0.4 -0.856 5.6-157.8-115.0 152.0 17.3 14.0 25.2 111 53 B L E -aD 4 101A 0 -108,-2.7 -106,-2.8 -2,-0.3 2,-0.5 -0.991 8.2-155.2-128.8 119.7 14.7 11.4 24.4 112 54 B I E -aD 5 100A 22 -12,-3.3 -12,-1.7 -2,-0.4 -106,-0.2 -0.860 16.2-179.3 -99.7 126.5 13.0 11.5 21.0 113 55 B E E -a 6 0A 8 -108,-2.5 -106,-2.4 -2,-0.5 -14,-0.1 -0.897 35.9-129.3-122.3 153.0 9.6 9.8 20.7 114 56 B P S S- 0 0 28 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.838 92.8 -4.0 -69.7 -29.9 7.2 9.5 17.7 115 57 B E S S- 0 0 131 -110,-0.1 2,-0.4 -109,-0.1 -110,-0.1 -0.976 77.7 -99.2-156.6 163.5 4.4 10.9 19.9 116 58 B L 0 0 122 -2,-0.3 -110,-0.0 -3,-0.1 -111,-0.0 -0.735 360.0 360.0 -90.6 133.9 3.6 12.1 23.4 117 59 B E 0 0 141 -2,-0.4 -1,-0.1 0, 0.0 -2,-0.0 -0.500 360.0 360.0 -89.4 360.0 1.8 9.7 25.7