==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=2-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 22-DEC-08 2KCK . COMPND 2 MOLECULE: TPR REPEAT; . SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCOCCUS MARIPALUDIS; . AUTHOR A.W.BARB,H-W.LEE,X.WANG,D.LEE,M.JIANG,C.CICCOSANTI,R.XIAO, . 112 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8685.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 85 75.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 7.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 19 17.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 55 49.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 1 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 232 0, 0.0 2,-0.7 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0-175.0 20.0 -7.0 -7.1 2 2 A V + 0 0 89 5,-0.0 2,-0.4 2,-0.0 0, 0.0 -0.828 360.0 153.9 -96.9 112.8 18.5 -6.3 -3.7 3 3 A D + 0 0 95 -2,-0.7 0, 0.0 1,-0.1 0, 0.0 -0.891 20.9 109.0-143.7 109.1 20.1 -8.6 -1.0 4 4 A Q S S- 0 0 97 -2,-0.4 -1,-0.1 32,-0.0 -2,-0.0 0.427 91.2 -56.9-138.1 -67.0 20.3 -7.6 2.7 5 5 A N S > S+ 0 0 106 31,-0.1 3,-0.7 27,-0.1 4,-0.5 0.377 118.4 71.2-159.5 -35.3 18.0 -9.5 5.0 6 6 A P T 3 S+ 0 0 12 0, 0.0 4,-0.4 0, 0.0 26,-0.1 0.114 72.3 99.0 -82.8 24.5 14.3 -9.2 3.9 7 7 A E T > S+ 0 0 92 2,-0.2 3,-0.6 1,-0.1 -5,-0.0 0.932 87.8 36.7 -75.2 -46.6 15.0 -11.4 0.8 8 8 A E G X S+ 0 0 117 -3,-0.7 3,-2.1 1,-0.2 -1,-0.1 0.827 103.4 72.3 -74.0 -33.7 13.6 -14.6 2.4 9 9 A Y G > S+ 0 0 77 -4,-0.5 3,-2.2 1,-0.3 -1,-0.2 0.748 71.1 90.9 -53.6 -22.4 10.8 -12.7 4.1 10 10 A Y G X + 0 0 153 -3,-0.6 3,-1.5 -4,-0.4 4,-0.5 0.686 55.7 98.4 -48.9 -14.7 9.3 -12.4 0.7 11 11 A L G X> + 0 0 72 -3,-2.1 4,-1.3 1,-0.3 3,-1.1 0.732 66.0 76.0 -48.0 -20.3 7.6 -15.7 1.6 12 12 A E H <> S+ 0 0 26 -3,-2.2 4,-1.2 1,-0.3 3,-0.5 0.954 75.8 69.4 -57.6 -54.3 4.7 -13.3 2.4 13 13 A G H <> S+ 0 0 34 -3,-1.5 4,-1.2 1,-0.3 -1,-0.3 0.759 103.9 48.3 -33.9 -32.6 3.8 -12.8 -1.2 14 14 A V H <> S+ 0 0 65 -3,-1.1 4,-3.5 -4,-0.5 5,-0.3 0.949 104.1 57.2 -76.7 -52.0 2.7 -16.5 -1.0 15 15 A L H < S+ 0 0 38 -4,-1.3 4,-0.4 -3,-0.5 -2,-0.2 0.934 108.8 45.1 -43.9 -65.7 0.7 -16.2 2.3 16 16 A Q H < S+ 0 0 77 -4,-1.2 -1,-0.2 1,-0.2 -2,-0.2 0.933 118.3 44.6 -46.1 -56.1 -1.6 -13.5 0.9 17 17 A Y H < S+ 0 0 189 -4,-1.2 -2,-0.2 -5,-0.3 -1,-0.2 0.973 134.1 16.9 -52.6 -64.1 -2.1 -15.4 -2.3 18 18 A D S < S+ 0 0 130 -4,-3.5 2,-0.7 1,-0.2 -3,-0.2 0.992 124.7 54.8 -72.8 -71.9 -2.5 -18.9 -0.7 19 19 A A S S- 0 0 36 -4,-0.4 2,-2.6 -5,-0.3 -1,-0.2 -0.516 79.5-145.5 -68.6 110.0 -3.3 -18.0 2.9 20 20 A G + 0 0 65 -2,-0.7 -4,-0.1 1,-0.2 -1,-0.1 -0.373 66.5 109.0 -76.2 65.0 -6.3 -15.6 2.7 21 21 A N >> + 0 0 70 -2,-2.6 3,-1.6 -6,-0.2 4,-1.5 -0.440 34.7 171.5-140.8 63.3 -5.2 -13.6 5.7 22 22 A Y H 3> S+ 0 0 104 1,-0.3 4,-0.6 2,-0.2 -1,-0.1 0.811 83.8 60.5 -41.4 -34.2 -4.0 -10.2 4.5 23 23 A T H >> S+ 0 0 74 1,-0.2 3,-1.5 2,-0.2 4,-0.5 0.926 100.0 52.6 -62.4 -45.8 -3.9 -9.4 8.2 24 24 A E H X> S+ 0 0 75 -3,-1.6 3,-2.1 1,-0.3 4,-0.9 0.922 97.5 65.0 -56.4 -45.8 -1.3 -12.1 8.9 25 25 A S H 3X S+ 0 0 6 -4,-1.5 4,-3.3 1,-0.3 -1,-0.3 0.752 89.5 71.6 -50.3 -23.0 1.0 -10.8 6.1 26 26 A I H - 0 0 48 -3,-0.4 4,-0.8 1,-0.2 3,-0.4 -0.815 40.7-176.6 -96.7 108.4 12.4 -0.2 -0.2 40 40 A S H >> S+ 0 0 18 -2,-0.8 4,-2.3 1,-0.2 3,-1.5 0.930 81.1 65.2 -67.2 -46.6 9.5 1.7 -1.7 41 41 A K H 3> S+ 0 0 152 1,-0.3 4,-0.9 2,-0.2 -1,-0.2 0.789 101.7 53.5 -47.7 -28.0 8.2 -1.4 -3.6 42 42 A Y H 3> S+ 0 0 69 -3,-0.4 4,-1.0 2,-0.2 -1,-0.3 0.837 106.9 49.6 -77.1 -33.7 7.6 -2.8 -0.2 43 43 A W H S+ 0 0 13 -4,-2.8 5,-2.6 2,-0.2 -2,-0.2 0.931 116.3 49.5 -63.5 -46.4 -4.7 -1.2 4.0 51 51 A Y H ><5S+ 0 0 55 -4,-3.3 3,-1.9 -5,-0.2 -2,-0.2 0.950 112.5 46.4 -58.3 -50.7 -7.0 0.0 1.2 52 52 A N H 3<5S+ 0 0 95 -4,-2.3 -1,-0.2 1,-0.3 -2,-0.2 0.801 102.9 66.0 -62.0 -27.9 -8.4 -3.4 0.6 53 53 A L T 3<5S- 0 0 56 -4,-1.6 -1,-0.3 -5,-0.2 -2,-0.2 0.304 125.1-104.5 -77.1 11.1 -8.8 -3.7 4.4 54 54 A E T < 5S+ 0 0 103 -3,-1.9 2,-1.1 1,-0.1 3,-0.3 0.586 87.5 128.8 76.1 10.6 -11.4 -0.9 4.1 55 55 A R >< + 0 0 126 -5,-2.6 4,-3.4 -6,-0.2 5,-0.2 -0.554 17.7 154.9 -97.7 68.3 -8.8 1.5 5.5 56 56 A Y H > S+ 0 0 24 -2,-1.1 4,-1.8 2,-0.2 -1,-0.2 0.900 76.6 46.7 -60.9 -41.2 -8.9 4.2 2.8 57 57 A E H > S+ 0 0 157 -3,-0.3 4,-1.3 2,-0.2 -1,-0.2 0.952 116.2 42.7 -66.7 -50.4 -7.7 6.8 5.3 58 58 A E H > S+ 0 0 69 1,-0.2 4,-1.0 2,-0.2 3,-0.4 0.913 111.1 56.1 -62.8 -43.1 -4.8 4.6 6.6 59 59 A A H >X S+ 0 0 5 -4,-3.4 4,-1.6 1,-0.3 3,-0.8 0.894 103.4 55.2 -56.4 -40.9 -3.9 3.4 3.1 60 60 A V H 3X S+ 0 0 35 -4,-1.8 4,-2.7 1,-0.2 5,-0.3 0.880 97.3 64.0 -60.0 -38.4 -3.5 7.0 2.1 61 61 A D H 3X S+ 0 0 82 -4,-1.3 4,-1.6 -3,-0.4 -1,-0.2 0.851 103.7 48.6 -54.9 -34.6 -1.0 7.5 4.9 62 62 A C H S+ 0 0 83 -4,-1.6 4,-2.4 -5,-0.3 5,-0.8 0.943 105.1 48.8 -60.7 -49.9 4.6 8.4 3.3 66 66 A V H <5S+ 0 0 3 -4,-2.6 6,-0.6 1,-0.2 4,-0.4 0.811 119.4 40.5 -59.6 -30.7 6.3 7.0 0.2 67 67 A I H <5S+ 0 0 26 -4,-1.3 -1,-0.2 -5,-0.2 -2,-0.2 0.710 119.3 46.9 -89.4 -24.2 6.0 10.5 -1.4 68 68 A N H <5S+ 0 0 107 -4,-2.5 -3,-0.2 -5,-0.1 -2,-0.2 0.975 121.0 30.7 -80.6 -65.4 6.9 12.3 1.9 69 69 A V T <5S+ 0 0 75 -4,-2.4 2,-0.5 1,-0.1 -3,-0.2 0.923 129.1 41.9 -60.1 -46.4 10.0 10.4 3.1 70 70 A I S + 0 0 55 -6,-0.6 2,-2.1 1,-0.1 3,-1.3 -0.153 26.4 154.9 -76.9 46.0 10.0 9.4 -5.6 73 73 A E T 3 + 0 0 113 -2,-1.9 -1,-0.1 1,-0.2 -2,-0.1 -0.501 54.9 63.3 -77.5 77.8 6.9 11.3 -6.6 74 74 A Y T 3 + 0 0 159 -2,-2.1 -1,-0.2 1,-0.0 2,-0.2 0.292 55.5 132.4-168.1 -22.8 6.5 9.7 -10.0 75 75 A N <> - 0 0 51 -3,-1.3 4,-2.2 1,-0.2 5,-0.2 -0.225 40.5-160.5 -49.4 107.8 5.8 6.0 -9.4 76 76 A K H > S+ 0 0 60 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.912 90.2 54.3 -60.0 -43.0 2.8 5.4 -11.8 77 77 A D H > S+ 0 0 117 1,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.891 108.0 50.5 -59.4 -40.5 1.9 2.3 -9.9 78 78 A V H > S+ 0 0 8 2,-0.2 4,-2.0 1,-0.2 -2,-0.2 0.952 110.6 47.4 -63.5 -50.5 1.8 4.2 -6.6 79 79 A W H X S+ 0 0 48 -4,-2.2 4,-1.9 1,-0.2 -2,-0.2 0.910 111.7 51.7 -57.6 -43.3 -0.4 7.0 -8.0 80 80 A A H X S+ 0 0 27 -4,-2.6 4,-1.6 1,-0.2 -1,-0.2 0.900 105.9 55.2 -61.0 -40.9 -2.8 4.4 -9.5 81 81 A A H X S+ 0 0 23 -4,-2.1 4,-1.3 1,-0.2 -1,-0.2 0.921 105.3 52.0 -58.3 -45.7 -3.0 2.6 -6.1 82 82 A K H >X S+ 0 0 35 -4,-2.0 4,-2.3 1,-0.2 3,-0.6 0.919 103.0 59.1 -57.9 -45.2 -4.1 5.8 -4.4 83 83 A A H 3X S+ 0 0 2 -4,-1.9 4,-2.8 1,-0.3 -1,-0.2 0.919 102.7 52.4 -50.1 -48.8 -6.9 6.3 -7.0 84 84 A D H 3< S+ 0 0 82 -4,-1.6 -1,-0.3 1,-0.2 -2,-0.2 0.853 108.6 52.4 -56.9 -35.2 -8.4 2.9 -6.0 85 85 A A H X< S+ 0 0 4 -4,-1.3 3,-1.3 -3,-0.6 -1,-0.2 0.931 111.3 44.5 -66.9 -46.3 -8.3 4.1 -2.4 86 86 A L H >< S+ 0 0 18 -4,-2.3 3,-1.3 1,-0.3 10,-0.2 0.854 95.5 76.1 -66.1 -35.6 -10.2 7.3 -3.2 87 87 A R T 3< S+ 0 0 87 -4,-2.8 -1,-0.3 1,-0.3 -2,-0.2 0.619 107.8 35.4 -52.3 -9.4 -12.6 5.4 -5.4 88 88 A Y T < S+ 0 0 148 -3,-1.3 2,-0.4 -5,-0.2 -1,-0.3 -0.429 90.0 121.5-144.5 62.8 -14.1 4.4 -2.1 89 89 A I < - 0 0 72 -3,-1.3 2,-1.3 3,-0.1 7,-0.1 -0.977 62.4-121.1-129.7 141.2 -13.7 7.3 0.4 90 90 A E S S+ 0 0 161 -2,-0.4 2,-0.3 3,-0.0 3,-0.1 -0.650 85.8 41.8 -83.3 94.3 -16.4 9.2 2.3 91 91 A G S S+ 0 0 66 -2,-1.3 2,-0.1 1,-0.0 -2,-0.1 -0.861 100.1 12.4 172.3-134.9 -16.0 12.8 1.1 92 92 A K - 0 0 149 -2,-0.3 4,-0.3 1,-0.1 -3,-0.1 -0.433 46.0-162.3 -72.2 144.8 -15.4 14.6 -2.2 93 93 A E S > S+ 0 0 140 2,-0.1 4,-1.2 1,-0.1 3,-0.3 0.677 83.5 72.3 -98.5 -24.2 -15.8 12.5 -5.4 94 94 A V H > S+ 0 0 91 1,-0.2 4,-1.9 2,-0.2 5,-0.1 0.745 89.3 65.7 -63.2 -22.0 -13.9 14.9 -7.7 95 95 A E H > S+ 0 0 87 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.949 97.3 50.7 -65.4 -49.9 -10.8 13.7 -5.9 96 96 A A H > S+ 0 0 2 -4,-0.3 4,-2.3 -3,-0.3 -1,-0.2 0.853 109.5 53.4 -56.8 -34.9 -11.0 10.1 -7.2 97 97 A E H X S+ 0 0 98 -4,-1.2 4,-2.4 2,-0.2 5,-0.2 0.938 106.8 49.6 -66.5 -47.4 -11.4 11.6 -10.7 98 98 A I H X S+ 0 0 105 -4,-1.9 4,-3.0 1,-0.2 -2,-0.2 0.896 111.7 50.3 -58.7 -41.0 -8.3 13.7 -10.5 99 99 A A H X S+ 0 0 7 -4,-2.2 4,-3.2 2,-0.2 5,-0.3 0.951 109.1 49.6 -63.3 -50.2 -6.3 10.7 -9.3 100 100 A E H X S+ 0 0 59 -4,-2.3 4,-2.5 1,-0.2 -2,-0.2 0.908 116.5 42.8 -55.3 -44.9 -7.5 8.4 -12.1 101 101 A A H < S+ 0 0 61 -4,-2.4 -1,-0.2 2,-0.2 -2,-0.2 0.898 113.8 51.4 -68.7 -41.3 -6.6 11.1 -14.7 102 102 A R H >< S+ 0 0 143 -4,-3.0 3,-0.7 -5,-0.2 4,-0.2 0.899 116.3 40.5 -62.7 -41.4 -3.3 11.8 -13.0 103 103 A A H >< S+ 0 0 15 -4,-3.2 3,-0.7 1,-0.2 -2,-0.2 0.890 117.9 46.8 -74.4 -40.2 -2.3 8.2 -12.9 104 104 A K G >< S+ 0 0 137 -4,-2.5 3,-0.8 -5,-0.3 -1,-0.2 0.166 81.6 107.0 -87.1 18.1 -3.7 7.5 -16.4 105 105 A L G < + 0 0 107 -3,-0.7 -1,-0.2 1,-0.2 -2,-0.1 0.898 68.0 64.6 -62.7 -40.6 -1.9 10.6 -17.6 106 106 A E G < S+ 0 0 125 -3,-0.7 -1,-0.2 -4,-0.2 -2,-0.1 0.814 83.1 168.6 -52.2 -31.3 0.7 8.5 -19.4 107 107 A H < - 0 0 117 -3,-0.8 2,-0.3 -4,-0.1 -2,-0.1 0.107 27.5-113.3 43.0-164.5 -2.2 7.3 -21.6 108 108 A H - 0 0 154 -4,-0.1 2,-0.3 -3,-0.0 3,-0.1 -0.986 21.9-162.3-159.8 158.3 -1.3 5.3 -24.7 109 109 A H - 0 0 136 -2,-0.3 -2,-0.0 1,-0.2 0, 0.0 -0.977 67.3 -3.4-150.9 134.2 -1.4 5.5 -28.5 110 110 A H - 0 0 173 -2,-0.3 -1,-0.2 1,-0.1 0, 0.0 0.954 59.2-165.4 48.0 84.8 -1.1 3.0 -31.3 111 111 A H 0 0 180 1,-0.1 -1,-0.1 -3,-0.1 -2,-0.0 0.915 360.0 360.0 -64.9 -44.1 -0.5 -0.2 -29.3 112 112 A H 0 0 240 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.975 360.0 360.0 -54.6 360.0 0.6 -2.1 -32.4