==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER NUCLEIC ACID BINDING PROTEIN 23-DEC-08 2KCM . COMPND 2 MOLECULE: COLD SHOCK DOMAIN FAMILY PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; . AUTHOR T.A.RAMELOT,M.MAGLAQUI,M.JIANG,C.CICCOSANTI,R.XIAO,J.LUI,J.K . 74 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5687.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 45 60.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 28.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 10.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 12.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 4.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 119 0, 0.0 48,-1.1 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 -78.0 11.5 -2.1 -0.3 2 2 A K E +A 48 0A 153 46,-0.1 18,-1.2 44,-0.0 2,-0.3 -0.713 360.0 133.1-103.4 154.5 10.5 1.4 -1.4 3 3 A G E -AB 47 19A 9 44,-0.8 44,-1.3 -2,-0.3 2,-0.4 -0.961 46.6 -94.5-174.2-172.2 8.1 2.5 -4.1 4 4 A K E -AB 46 18A 137 14,-1.9 14,-2.5 -2,-0.3 2,-0.6 -0.974 27.8-124.4-128.5 141.1 5.1 4.8 -4.9 5 5 A V E + B 0 17A 11 40,-1.7 39,-0.8 -2,-0.4 40,-0.3 -0.720 27.3 174.8 -86.2 119.0 1.4 4.1 -4.7 6 6 A V E + 0 0 90 10,-1.4 2,-0.3 -2,-0.6 -1,-0.2 0.759 67.9 3.8 -94.0 -28.7 -0.3 4.7 -8.0 7 7 A S E - B 0 16A 40 9,-1.7 9,-2.9 2,-0.0 -1,-0.3 -0.998 53.1-178.3-156.0 153.1 -3.8 3.5 -7.0 8 8 A Y E - B 0 15A 46 -2,-0.3 2,-0.6 7,-0.3 7,-0.2 -0.832 4.1-175.1-157.0 112.7 -5.7 2.2 -4.0 9 9 A L E > - B 0 14A 84 5,-0.7 5,-1.2 -2,-0.3 -2,-0.0 -0.932 9.6-168.9-115.2 116.1 -9.4 1.1 -4.0 10 10 A A T > 5S+ 0 0 58 -2,-0.6 3,-1.3 1,-0.2 -1,-0.1 0.864 88.6 60.0 -69.3 -36.1 -11.0 0.1 -0.7 11 11 A A T 3 5S+ 0 0 105 1,-0.3 -1,-0.2 2,-0.1 -2,-0.0 0.896 113.0 37.2 -61.4 -38.0 -14.1 -1.4 -2.4 12 12 A K T 3 5S- 0 0 139 2,-0.2 -1,-0.3 -3,-0.0 -2,-0.2 0.290 99.5-141.0 -95.9 11.1 -11.8 -3.9 -4.3 13 13 A K T < 5S+ 0 0 125 -3,-1.3 2,-0.4 1,-0.1 16,-0.2 0.752 74.0 101.4 35.0 27.4 -9.6 -4.2 -1.2 14 14 A Y E < +B 9 0A 74 -5,-1.2 -5,-0.7 14,-0.1 -2,-0.2 -0.964 46.7 170.3-141.7 123.1 -6.8 -4.3 -3.8 15 15 A G E -B 8 0A 3 -2,-0.4 12,-0.5 12,-0.3 2,-0.3 -0.357 26.0-119.0-114.4-164.1 -4.5 -1.4 -4.7 16 16 A F E -B 7 0A 66 -9,-2.9 -9,-1.7 -2,-0.1 -10,-1.4 -0.986 19.6-174.6-146.8 134.3 -1.4 -1.1 -6.9 17 17 A I E -BC 5 25A 3 8,-0.9 8,-0.9 -2,-0.3 2,-0.7 -0.991 16.3-144.5-130.8 132.4 2.2 0.0 -6.0 18 18 A Q E -BC 4 24A 86 -14,-2.5 -14,-1.9 -2,-0.4 6,-0.2 -0.845 18.2-142.4-100.5 117.0 5.0 0.5 -8.5 19 19 A G E > -B 3 0A 6 4,-1.4 3,-1.3 -2,-0.7 -16,-0.2 -0.260 23.1-113.3 -70.8 161.6 8.5 -0.4 -7.2 20 20 A D T 3 S+ 0 0 140 -18,-1.2 -1,-0.1 1,-0.3 -17,-0.1 0.875 121.1 47.4 -65.1 -35.8 11.6 1.6 -8.1 21 21 A D T 3 S- 0 0 133 2,-0.1 -1,-0.3 1,-0.0 3,-0.1 0.343 131.6 -95.6 -87.5 9.0 13.0 -1.3 -10.1 22 22 A G S < S+ 0 0 48 -3,-1.3 2,-0.7 1,-0.3 -2,-0.2 0.684 78.6 147.7 86.3 18.7 9.5 -1.8 -11.7 23 23 A E - 0 0 92 -5,-0.1 -4,-1.4 1,-0.0 -1,-0.3 -0.769 35.8-149.3 -92.0 118.1 8.5 -4.5 -9.2 24 24 A S E -C 18 0A 38 -2,-0.7 2,-0.3 -6,-0.2 -6,-0.2 -0.356 10.3-159.6 -80.6 164.0 4.7 -4.4 -8.5 25 25 A Y E -C 17 0A 9 -8,-0.9 -8,-0.9 33,-0.1 2,-0.3 -0.992 14.2-123.8-144.8 151.0 3.2 -5.4 -5.1 26 26 A F - 0 0 64 -2,-0.3 34,-1.3 -10,-0.1 2,-0.5 -0.745 18.9-144.8 -97.6 143.4 -0.3 -6.5 -3.9 27 27 A L + 0 0 16 -12,-0.5 -12,-0.3 -2,-0.3 2,-0.3 -0.913 27.7 160.6-110.8 127.3 -2.2 -4.6 -1.2 28 28 A H >> - 0 0 57 -2,-0.5 3,-1.1 -14,-0.1 4,-0.7 -0.961 49.6-118.4-140.7 159.4 -4.4 -6.6 1.3 29 29 A F G >4 S+ 0 0 47 -2,-0.3 3,-0.9 1,-0.3 -1,-0.1 0.873 114.4 63.5 -65.7 -35.2 -5.9 -6.0 4.7 30 30 A S G 34 S+ 0 0 119 1,-0.3 -1,-0.3 -3,-0.1 32,-0.2 0.724 103.4 50.5 -62.3 -17.8 -3.9 -9.0 6.0 31 31 A E G <4 S+ 0 0 26 -3,-1.1 32,-1.8 30,-0.1 31,-0.5 0.666 94.2 88.5 -93.9 -18.6 -0.8 -6.9 5.2 32 32 A L S << S- 0 0 23 -3,-0.9 3,-0.1 -4,-0.7 32,-0.1 -0.593 74.4-138.7 -83.0 141.0 -2.0 -3.8 7.0 33 33 A L S S+ 0 0 126 30,-0.5 2,-0.3 -2,-0.3 -1,-0.1 0.916 89.2 10.9 -63.3 -41.7 -1.1 -3.5 10.7 34 34 A D - 0 0 76 1,-0.1 4,-0.2 -3,-0.0 -1,-0.2 -0.970 68.9-128.1-137.8 152.8 -4.7 -2.2 11.5 35 35 A K S > S+ 0 0 119 -2,-0.3 3,-1.4 1,-0.2 4,-0.3 0.902 112.6 52.6 -66.7 -39.4 -7.9 -2.0 9.5 36 36 A K G >> S+ 0 0 157 1,-0.3 3,-2.9 2,-0.2 4,-0.7 0.903 91.2 73.8 -64.0 -39.4 -8.2 1.8 10.3 37 37 A D G 34 S+ 0 0 32 1,-0.3 -1,-0.3 2,-0.2 4,-0.2 0.671 82.3 76.2 -51.1 -9.5 -4.7 2.4 9.0 38 38 A E G X4 S+ 0 0 64 -3,-1.4 3,-0.7 1,-0.2 -1,-0.3 0.877 95.0 44.6 -70.3 -36.6 -6.4 1.9 5.6 39 39 A G T <4 S+ 0 0 68 -3,-2.9 -1,-0.2 -4,-0.3 -2,-0.2 0.584 106.5 62.3 -83.2 -8.9 -7.9 5.4 5.9 40 40 A K T 3< S+ 0 0 128 -4,-0.7 -1,-0.2 -3,-0.1 -2,-0.2 0.446 80.2 112.5 -94.3 0.3 -4.6 6.7 7.0 41 41 A L < - 0 0 48 -3,-0.7 2,-0.6 -4,-0.2 6,-0.1 -0.352 65.4-131.7 -70.9 153.2 -3.0 5.7 3.7 42 42 A V > - 0 0 31 4,-0.1 3,-0.6 -2,-0.0 2,-0.4 -0.925 13.9-152.0-113.9 120.7 -1.8 8.5 1.3 43 43 A K T 3 S+ 0 0 144 -2,-0.6 3,-0.1 1,-0.2 -37,-0.1 -0.721 78.3 22.3 -91.0 136.4 -2.8 8.3 -2.4 44 44 A G T 3 S+ 0 0 62 -39,-0.8 2,-0.2 -2,-0.4 -1,-0.2 0.767 113.1 73.0 84.1 26.4 -0.5 10.0 -4.9 45 45 A S S < S- 0 0 49 -3,-0.6 -40,-1.7 -40,-0.3 -1,-0.3 -0.760 88.9 -56.5-149.2-164.6 2.7 9.9 -2.8 46 46 A M E -A 4 0A 113 -2,-0.2 2,-0.3 -42,-0.2 -42,-0.2 -0.610 46.2-173.6 -87.5 145.7 5.4 7.7 -1.3 47 47 A V E -A 3 0A 25 -44,-1.3 -44,-0.8 -2,-0.3 2,-0.5 -0.915 18.8-130.1-134.4 161.1 4.6 4.7 0.9 48 48 A H E +AD 2 64A 63 16,-1.7 16,-3.4 -2,-0.3 2,-0.3 -0.951 37.1 148.2-118.9 124.8 6.6 2.2 3.0 49 49 A F E - 0 0 1 -48,-1.1 13,-0.1 -2,-0.5 14,-0.1 -0.985 37.4-123.2-149.4 157.0 6.2 -1.6 2.7 50 50 A D E - D 0 61A 64 11,-1.7 11,-1.4 -2,-0.3 13,-0.0 -0.773 34.3-102.5-104.3 150.6 8.4 -4.7 3.0 51 51 A P E - D 0 60A 71 0, 0.0 9,-0.2 0, 0.0 -1,-0.1 -0.277 36.4-175.3 -67.9 152.8 8.8 -7.4 0.2 52 52 A T E - D 0 59A 30 7,-1.0 7,-0.9 1,-0.1 5,-0.0 -0.963 19.1-158.0-152.5 132.2 7.0 -10.7 0.4 53 53 A P > + 0 0 104 0, 0.0 4,-1.3 0, 0.0 -1,-0.1 0.990 30.0 161.0 -73.1 -71.5 7.2 -13.9 -1.8 54 54 A T T >4 - 0 0 52 2,-0.2 3,-1.1 1,-0.2 -2,-0.1 0.452 64.5 -78.4 58.4 149.3 4.0 -15.7 -1.2 55 55 A P T 34 S+ 0 0 147 0, 0.0 -1,-0.2 0, 0.0 3,-0.1 0.835 134.2 58.9 -46.4 -36.6 2.7 -18.3 -3.8 56 56 A K T 34 S- 0 0 149 1,-0.1 2,-0.4 2,-0.0 -2,-0.2 0.919 105.1-134.6 -63.4 -41.8 1.6 -15.5 -6.0 57 57 A G S << S+ 0 0 29 -4,-1.3 2,-0.5 -3,-1.1 -1,-0.1 -0.637 77.6 57.1 123.3 -75.6 5.1 -14.1 -6.2 58 58 A L + 0 0 68 -2,-0.4 2,-0.3 -3,-0.1 -33,-0.1 -0.793 65.5 140.0 -95.7 128.0 4.9 -10.3 -5.6 59 59 A A E -D 52 0A 5 -7,-0.9 -7,-1.0 -2,-0.5 2,-0.2 -0.984 40.5-127.9-162.6 151.6 3.3 -9.1 -2.4 60 60 A A E -D 51 0A 1 -34,-1.3 2,-0.3 -2,-0.3 3,-0.1 -0.648 21.2-166.1-101.4 160.0 3.7 -6.4 0.3 61 61 A K E +D 50 0A 127 -11,-1.4 -11,-1.7 -2,-0.2 -30,-0.1 -0.990 60.8 9.1-149.8 138.7 3.8 -7.0 4.1 62 62 A A E S- 0 0 40 -31,-0.5 -1,-0.2 -2,-0.3 -30,-0.2 0.995 76.8-146.9 58.0 68.6 3.6 -4.8 7.2 63 63 A I E - 0 0 8 -32,-1.8 -30,-0.5 -14,-0.1 2,-0.4 -0.399 17.2-166.7 -66.2 138.3 2.5 -1.5 5.4 64 64 A S E -D 48 0A 48 -16,-3.4 -16,-1.7 -2,-0.1 -1,-0.0 -0.982 18.7-151.7-132.4 142.0 3.9 1.6 7.1 65 65 A L + 0 0 46 -2,-0.4 -18,-0.1 -18,-0.2 -2,-0.0 -0.834 15.5 175.0-113.4 93.0 3.0 5.3 6.7 66 66 A P + 0 0 93 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 0.419 46.8 113.8 -77.7 3.1 6.1 7.4 7.6 67 67 A L S S- 0 0 50 1,-0.2 -2,-0.1 -21,-0.1 4,-0.1 -0.391 86.8 -70.1 -75.1 154.2 4.2 10.6 6.5 68 68 A E - 0 0 118 1,-0.1 3,-0.3 -2,-0.1 -1,-0.2 -0.040 41.0-132.9 -41.8 139.1 3.3 13.2 9.1 69 69 A H S S+ 0 0 165 1,-0.3 2,-0.7 -3,-0.1 -1,-0.1 0.927 98.2 36.1 -66.0 -43.5 0.6 11.9 11.5 70 70 A H + 0 0 149 1,-0.2 -1,-0.3 0, 0.0 -2,-0.1 -0.869 62.4 176.4-115.6 101.6 -1.4 15.1 11.2 71 71 A H + 0 0 115 -2,-0.7 2,-0.4 -3,-0.3 -1,-0.2 0.903 69.9 67.4 -68.7 -40.2 -1.3 16.6 7.7 72 72 A H S S- 0 0 149 1,-0.0 2,-0.3 2,-0.0 0, 0.0 -0.664 73.3-159.3 -85.5 134.0 -3.8 19.4 8.7 73 73 A H 0 0 149 -2,-0.4 -2,-0.0 0, 0.0 -1,-0.0 -0.865 360.0 360.0-114.0 147.2 -2.5 22.0 11.2 74 74 A H 0 0 238 -2,-0.3 -2,-0.0 0, 0.0 0, 0.0 -0.957 360.0 360.0-147.5 360.0 -4.6 24.3 13.5